Wall clock time and date at job start Tue Mar 31 2020 19:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99968 * 2 1 4 4 H 1.48507 * 109.47037 * 239.99994 * 3 2 1 5 5 H 1.48501 * 109.46921 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47520 * 119.99944 * 3 2 1 7 7 C 1.38816 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99525 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00404 * 0.02562 * 7 2 1 10 10 C 1.47782 * 134.40485 * 179.97438 * 9 7 2 11 11 C 1.52891 * 85.78300 * 156.16359 * 10 9 7 12 12 C 1.47786 * 134.39720 * 0.04798 * 9 7 2 13 13 C 1.53465 * 115.57453 * 140.26630 * 11 10 9 14 14 C 1.54737 * 103.72177 * 107.30541 * 13 11 10 15 15 H 1.09004 * 110.50868 * 117.88187 * 14 13 11 16 16 N 1.46501 * 110.50755 * 240.44748 * 14 13 11 17 17 C 1.34771 * 120.00156 * 204.99804 * 16 14 13 18 18 O 1.21285 * 120.00050 * 0.02562 * 17 16 14 19 19 C 1.50699 * 120.00188 * 180.02562 * 17 16 14 20 20 C 1.52993 * 109.47181 * 300.00247 * 19 17 16 21 21 C 1.53004 * 109.46939 * 179.97438 * 20 19 17 22 22 C 1.52995 * 109.47405 * 0.02562 * 21 20 19 23 23 C 1.53000 * 109.47177 * 59.99348 * 22 21 20 24 24 C 1.52996 * 109.47305 * 300.00472 * 23 22 21 25 25 C 1.53001 * 109.46901 * 299.99950 * 22 21 20 26 26 C 1.52996 * 109.47247 * 59.99732 * 25 22 21 27 27 C 1.54541 * 104.07255 * 359.23702 * 14 13 11 28 28 O 1.43247 * 115.84298 * 265.48817 * 11 10 9 29 29 H 0.97000 * 120.00237 * 0.02562 * 1 2 3 30 30 H 1.09006 * 113.81943 * 41.95426 * 10 9 7 31 31 H 1.08994 * 113.93759 * 270.39231 * 10 9 7 32 32 H 1.09006 * 113.82136 * 89.62488 * 12 9 7 33 33 H 1.09002 * 113.82320 * 318.05491 * 12 9 7 34 34 H 1.08997 * 110.57405 * 348.74493 * 13 11 10 35 35 H 1.09002 * 110.57204 * 225.86474 * 13 11 10 36 36 H 0.96999 * 119.99653 * 25.00434 * 16 14 13 37 37 H 1.09000 * 109.47230 * 299.99682 * 20 19 17 38 38 H 1.09006 * 109.47126 * 60.00137 * 20 19 17 39 39 H 1.08998 * 109.47491 * 239.99706 * 21 20 19 40 40 H 1.09002 * 109.46452 * 120.00254 * 21 20 19 41 41 H 1.09002 * 109.47604 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.47248 * 180.02562 * 23 22 21 43 43 H 1.09004 * 109.47412 * 60.00375 * 23 22 21 44 44 H 1.09004 * 109.47090 * 239.99529 * 24 23 22 45 45 H 1.09002 * 109.47797 * 120.00232 * 24 23 22 46 46 H 1.09002 * 109.47168 * 180.02562 * 25 22 21 47 47 H 1.08998 * 109.46996 * 299.99826 * 25 22 21 48 48 H 1.09006 * 109.46876 * 240.00030 * 26 25 22 49 49 H 1.09003 * 109.47104 * 120.00806 * 26 25 22 50 50 H 1.09002 * 110.33136 * 142.52449 * 27 14 13 51 51 H 1.09008 * 110.32594 * 264.63913 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7230 -3.8115 0.0005 11 6 0.3494 -4.0783 0.6167 12 6 -0.1058 -2.7557 -0.0008 13 6 -0.3736 -5.3318 0.1060 14 6 -0.2749 -6.3212 1.2916 15 1 -1.2687 -6.5766 1.6596 16 7 0.4495 -7.5303 0.8922 17 6 0.2344 -8.6907 1.5429 18 8 -0.5594 -8.7341 2.4590 19 6 0.9800 -9.9343 1.1325 20 6 0.6583 -10.2636 -0.3266 21 6 1.4159 -11.5258 -0.7435 22 6 2.2421 -12.0384 0.4378 23 6 1.3115 -12.3649 1.6075 24 6 0.5540 -11.1027 2.0244 25 6 3.2414 -10.9620 0.8664 26 6 2.4839 -9.6998 1.2833 27 6 0.5166 -5.5421 2.3662 28 8 0.3093 -4.1468 2.0470 29 1 -0.4850 0.8400 -0.0004 30 1 2.5557 -4.0361 0.6672 31 1 1.8485 -4.2356 -0.9956 32 1 -0.5327 -2.8595 -0.9984 33 1 -0.7174 -2.1464 0.6646 34 1 0.1315 -5.7344 -0.7720 35 1 -1.4161 -5.1074 -0.1199 36 1 1.0841 -7.4955 0.1594 37 1 -0.4135 -10.4307 -0.4336 38 1 0.9617 -9.4316 -0.9622 39 1 2.0786 -11.2933 -1.5771 40 1 0.7039 -12.2927 -1.0484 41 1 2.7815 -12.9379 0.1410 42 1 1.9001 -12.7297 2.4493 43 1 0.5995 -13.1318 1.3023 44 1 0.7828 -10.8683 3.0641 45 1 -0.5178 -11.2699 1.9172 46 1 3.8304 -11.3273 1.7077 47 1 3.9044 -10.7293 0.0331 48 1 2.7872 -8.8676 0.6479 49 1 2.7129 -9.4653 2.3229 50 1 0.1271 -5.7652 3.3595 51 1 1.5763 -5.7915 2.3110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054013055.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:04 Heat of formation + Delta-G solvation = -60.331813 kcal Electronic energy + Delta-G solvation = -30176.987004 eV Core-core repulsion = 26269.176091 eV Total energy + Delta-G solvation = -3907.810912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.23527 -41.37480 -39.57406 -37.72609 -35.69973 -34.12941 -33.04989 -31.81107 -31.78413 -31.19840 -29.71301 -27.49730 -26.68801 -24.64320 -23.83385 -23.58129 -23.51559 -22.17637 -21.41498 -20.63472 -18.86071 -18.64371 -17.64135 -17.41162 -17.13513 -16.79331 -16.67510 -16.42384 -16.26380 -16.02361 -15.81602 -15.37187 -14.84845 -14.69104 -14.28909 -13.98434 -13.90620 -13.64054 -13.24671 -13.07167 -13.03463 -13.01446 -12.96362 -12.92601 -12.90849 -12.83903 -12.76171 -12.74008 -12.63083 -12.25213 -11.78346 -11.60586 -11.43776 -11.39290 -11.32673 -10.93131 -10.75650 -10.71102 -10.56008 -10.52559 -10.09936 -8.92905 -7.90313 -5.23071 1.43818 1.48189 1.54097 1.58892 2.07306 2.47121 2.91606 3.27895 3.39330 3.42368 3.49904 3.59940 3.60629 3.70934 3.79397 4.07849 4.13049 4.21328 4.24258 4.35963 4.37753 4.45091 4.45971 4.47317 4.49330 4.50430 4.55457 4.64511 4.72539 4.75347 4.83812 4.87979 4.92705 5.00225 5.07984 5.13901 5.14804 5.17919 5.22487 5.29224 5.35262 5.37680 5.38202 5.46109 5.47880 5.50215 5.50288 5.50485 5.91996 6.13555 6.51726 6.90817 7.21811 7.60445 8.54457 9.26858 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.025988 B = 0.002429 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.162688 B =11522.610128 C =11904.900298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.980 3.020 4 H -0.273 1.273 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.235 4.235 8 H 0.083 0.917 9 N -0.639 5.639 10 C 0.109 3.891 11 C 0.073 3.927 12 C 0.169 3.831 13 C -0.131 4.131 14 C 0.126 3.874 15 H 0.092 0.908 16 N -0.703 5.703 17 C 0.521 3.479 18 O -0.581 6.581 19 C -0.064 4.064 20 C -0.106 4.106 21 C -0.108 4.108 22 C -0.087 4.087 23 C -0.110 4.110 24 C -0.094 4.094 25 C -0.109 4.109 26 C -0.108 4.108 27 C 0.035 3.965 28 O -0.369 6.369 29 H 0.248 0.752 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.415 0.585 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.066 0.934 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.055 0.945 50 H 0.088 0.912 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.637 -29.206 -2.760 29.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.808 3.192 4 H -0.199 1.199 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.363 4.363 8 H 0.101 0.899 9 N -0.366 5.366 10 C -0.016 4.016 11 C 0.033 3.967 12 C 0.043 3.957 13 C -0.169 4.169 14 C 0.020 3.980 15 H 0.110 0.890 16 N -0.356 5.356 17 C 0.309 3.691 18 O -0.461 6.461 19 C -0.067 4.067 20 C -0.144 4.144 21 C -0.146 4.146 22 C -0.106 4.106 23 C -0.148 4.148 24 C -0.132 4.132 25 C -0.146 4.146 26 C -0.145 4.145 27 C -0.043 4.043 28 O -0.287 6.287 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.133 0.867 35 H 0.112 0.888 36 H 0.253 0.747 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.098 0.902 48 H 0.098 0.902 49 H 0.074 0.926 50 H 0.107 0.893 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.090 -28.702 -1.959 29.058 hybrid contribution 0.252 1.460 0.038 1.482 sum 4.342 -27.242 -1.921 27.653 Atomic orbital electron populations 1.70000 1.06494 1.25677 1.58206 1.25657 0.96608 1.00993 1.03032 0.85130 0.77141 0.78657 0.78271 1.19861 1.22009 1.20548 1.19363 0.90792 0.83415 1.42767 0.89894 1.46212 1.03308 1.00659 1.86425 1.23157 0.95763 0.84124 0.98552 1.23412 0.96341 0.95580 0.81412 1.22140 0.87520 0.89574 0.96418 1.22930 1.02998 0.92738 0.98266 1.22119 0.96500 0.84772 0.94596 0.88980 1.45955 1.44704 1.07703 1.37236 1.21213 0.81533 0.85289 0.81066 1.90685 1.37824 1.86278 1.31287 1.20697 0.96339 0.91301 0.98372 1.21593 1.00724 0.99951 0.92106 1.21537 0.98946 0.96312 0.97803 1.21090 0.95912 0.98739 0.94832 1.21573 0.98471 0.96166 0.98572 1.21329 0.99816 0.93991 0.98057 1.21535 0.97325 0.93960 1.01811 1.21589 0.91185 0.99848 1.01918 1.23932 1.00065 0.80778 0.99546 1.89082 1.92810 1.25804 1.21054 0.94285 0.93271 0.90711 0.93556 0.94544 0.86733 0.88766 0.74675 0.92213 0.90036 0.90221 0.91299 0.89500 0.91450 0.91218 0.93126 0.92841 0.91524 0.90247 0.90216 0.92603 0.89342 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.55 11.40 21.65 0.25 -59.30 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 3 Si 0.98 46.97 29.55 68.60 2.03 49.00 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 7 C -0.24 -13.62 10.70 84.03 0.90 -12.72 16 8 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 9 N -0.64 -33.63 3.71 -740.95 -2.75 -36.38 16 10 C 0.11 4.23 8.44 86.10 0.73 4.96 16 11 C 0.07 2.75 1.28 -10.65 -0.01 2.74 16 12 C 0.17 8.21 7.02 86.10 0.60 8.81 16 13 C -0.13 -3.36 6.25 31.34 0.20 -3.16 16 14 C 0.13 3.17 3.49 46.11 0.16 3.33 16 15 H 0.09 2.57 7.55 -2.38 -0.02 2.55 16 16 N -0.70 -13.52 4.88 -437.25 -2.13 -15.65 16 17 C 0.52 11.58 6.48 87.66 0.57 12.15 16 18 O -0.58 -18.12 15.63 -3.05 -0.05 -18.16 16 19 C -0.06 -1.00 0.61 -52.93 -0.03 -1.03 16 20 C -0.11 -1.23 4.89 30.59 0.15 -1.08 16 21 C -0.11 -0.92 5.71 30.59 0.17 -0.75 16 22 C -0.09 -0.77 3.20 -10.79 -0.03 -0.81 16 23 C -0.11 -1.28 5.71 30.59 0.17 -1.10 16 24 C -0.09 -1.62 4.28 30.61 0.13 -1.49 16 25 C -0.11 -1.02 5.71 30.59 0.17 -0.84 16 26 C -0.11 -1.37 4.88 30.58 0.15 -1.22 16 27 C 0.03 1.05 7.37 72.51 0.53 1.59 16 28 O -0.37 -15.16 11.44 -148.98 -1.70 -16.86 16 29 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 30 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.08 2.44 7.95 -2.39 -0.02 2.42 16 32 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 33 H 0.04 2.08 7.19 -2.39 -0.02 2.06 16 34 H 0.11 2.22 7.39 -2.39 -0.02 2.20 16 35 H 0.09 2.38 8.12 -2.39 -0.02 2.36 16 36 H 0.42 5.63 7.21 -92.71 -0.67 4.96 16 37 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.08 0.73 7.56 -2.38 -0.02 0.72 16 39 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 45 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 46 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.08 0.57 8.14 -2.39 -0.02 0.56 16 48 H 0.08 0.84 7.56 -2.38 -0.02 0.82 16 49 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 51 H 0.07 1.91 8.06 -2.38 -0.02 1.89 16 Total: -1.00 -76.64 388.10 0.91 -75.73 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.24 Total: 15.93 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 5.03 Total: 5.71 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -4.63 Total: -111.33 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -1.75 Total: -35.03 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -76.64 0.91 -75.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054013055.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.394 kcal (2) G-P(sol) polarization free energy of solvation -76.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds