Wall clock time and date at job start Tue Mar 31 2020 19:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86808 * 119.99740 * 2 1 4 4 H 1.48497 * 109.46659 * 239.99596 * 3 2 1 5 5 H 1.48495 * 109.47212 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46997 * 119.99978 * 3 2 1 7 7 C 1.38806 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00316 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99938 * 359.97438 * 7 2 1 10 10 C 1.47487 * 125.65683 * 359.97438 * 9 7 2 11 11 C 1.55037 * 104.90309 * 204.02959 * 10 9 7 12 12 C 1.54486 * 101.52677 * 323.65706 * 11 10 9 13 13 C 1.47175 * 125.66402 * 179.97438 * 9 7 2 14 14 C 1.52226 * 110.28848 * 276.20827 * 12 11 10 15 15 C 1.53168 * 109.65473 * 178.01749 * 14 12 11 16 16 C 1.52759 * 109.34415 * 60.05092 * 15 14 12 17 17 N 1.46942 * 109.15682 * 304.99173 * 16 15 14 18 18 C 1.34779 * 120.70623 * 234.15977 * 17 16 15 19 19 O 1.21279 * 119.99792 * 179.71749 * 18 17 16 20 20 C 1.50697 * 119.99891 * 359.71341 * 18 17 16 21 21 C 1.50704 * 109.47066 * 180.02562 * 20 18 17 22 22 C 1.29982 * 118.74097 * 95.00410 * 21 20 18 23 23 C 1.50230 * 122.86664 * 180.41357 * 22 21 20 24 24 O 1.42901 * 110.13093 * 344.39596 * 23 22 21 25 25 C 1.43297 * 113.01904 * 50.18798 * 24 23 22 26 26 C 1.50380 * 118.74368 * 275.00490 * 21 20 18 27 27 C 1.47083 * 118.58743 * 53.87871 * 17 16 15 28 28 H 0.97002 * 119.99641 * 0.02562 * 1 2 3 29 29 H 1.08994 * 110.35597 * 322.88601 * 10 9 7 30 30 H 1.09001 * 110.35455 * 85.07037 * 10 9 7 31 31 H 1.08996 * 111.01438 * 205.59863 * 11 10 9 32 32 H 1.08997 * 111.01200 * 81.71385 * 11 10 9 33 33 H 1.09001 * 109.91249 * 59.08764 * 13 9 7 34 34 H 1.09003 * 110.07177 * 297.90832 * 13 9 7 35 35 H 1.09009 * 109.44414 * 298.07340 * 14 12 11 36 36 H 1.08997 * 109.44287 * 57.99654 * 14 12 11 37 37 H 1.09000 * 109.50590 * 180.10944 * 15 14 12 38 38 H 1.08997 * 109.50340 * 300.19329 * 15 14 12 39 39 H 1.09001 * 109.48258 * 185.07028 * 16 15 14 40 40 H 1.08997 * 109.41366 * 64.87308 * 16 15 14 41 41 H 1.09002 * 109.46993 * 60.00662 * 20 18 17 42 42 H 1.08999 * 109.47325 * 300.00317 * 20 18 17 43 43 H 1.08004 * 118.56458 * 0.40872 * 22 21 20 44 44 H 1.09002 * 109.35667 * 224.18962 * 23 22 21 45 45 H 1.08999 * 109.35889 * 104.60134 * 23 22 21 46 46 H 1.08999 * 109.67974 * 172.07335 * 25 24 23 47 47 H 1.08997 * 109.71781 * 51.53682 * 25 24 23 48 48 H 1.08996 * 109.45247 * 43.33474 * 26 21 20 49 49 H 1.08999 * 109.44903 * 283.40605 * 26 21 20 50 50 H 1.09005 * 109.57388 * 67.58857 * 27 17 16 51 51 H 1.08997 * 109.57774 * 187.84715 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 -0.1420 -2.5335 0.0028 11 6 -0.4034 -3.9343 0.6137 12 6 0.7808 -4.7458 0.0430 13 6 1.9322 -3.7290 0.0017 14 6 0.4527 -5.2446 -1.3573 15 6 1.6539 -6.0044 -1.9281 16 6 1.9738 -7.1958 -1.0270 17 7 2.1746 -6.7197 0.3486 18 6 3.3029 -7.0185 1.0224 19 8 3.4575 -6.6146 2.1555 20 6 4.3723 -7.8546 0.3680 21 6 5.5199 -8.0425 1.3266 22 6 5.5537 -9.1163 2.0583 23 6 6.6480 -9.3933 3.0496 24 8 7.7641 -8.5357 2.8025 25 6 7.3954 -7.1559 2.6857 26 6 6.5820 -6.9805 1.4002 27 6 1.1208 -5.9049 0.9722 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5992 -1.7597 0.6194 30 1 -0.5287 -2.4840 -1.0151 31 1 -1.3557 -4.3387 0.2708 32 1 -0.3646 -3.8992 1.7024 33 1 2.5656 -3.8499 0.8806 34 1 2.5223 -3.8728 -0.9034 35 1 -0.4096 -5.9100 -1.3127 36 1 0.2226 -4.3952 -2.0003 37 1 1.4172 -6.3587 -2.9314 38 1 2.5175 -5.3407 -1.9709 39 1 2.8816 -7.6851 -1.3800 40 1 1.1436 -7.9016 -1.0514 41 1 4.7281 -7.3509 -0.5308 42 1 3.9600 -8.8275 0.1003 43 1 4.7604 -9.8410 1.9488 44 1 6.9637 -10.4327 2.9583 45 1 6.2743 -9.2186 4.0585 46 1 8.2927 -6.5389 2.6395 47 1 6.7921 -6.8625 3.5448 48 1 6.1125 -5.9969 1.3991 49 1 7.2429 -7.0679 0.5378 50 1 0.2331 -6.5167 1.1329 51 1 1.4755 -5.5180 1.9275 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054189428.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:47 Heat of formation + Delta-G solvation = -40.062117 kcal Electronic energy + Delta-G solvation = -30352.520220 eV Core-core repulsion = 26445.588268 eV Total energy + Delta-G solvation = -3906.931952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.57249 -39.51989 -38.31978 -35.87160 -34.83411 -33.08734 -31.89761 -31.24124 -30.48110 -29.38162 -28.25157 -25.68185 -25.55471 -24.43855 -23.88857 -23.22137 -22.04532 -20.31227 -19.34531 -18.19573 -18.01766 -17.17032 -16.82901 -16.53615 -16.36732 -15.53472 -15.37517 -15.08474 -14.98918 -14.64811 -14.19910 -13.93701 -13.66112 -13.52811 -13.27047 -13.22735 -13.03930 -12.73223 -12.52088 -12.48483 -12.11082 -12.03815 -11.90235 -11.54331 -11.42820 -11.09097 -10.92762 -10.89416 -10.83929 -10.71976 -10.63351 -10.14405 -10.12046 -9.91196 -9.83005 -9.76733 -9.67736 -9.44497 -8.96328 -8.61801 -8.45506 -6.78559 -5.62456 -3.03156 1.89558 2.68929 3.10729 3.42040 3.46131 3.47449 3.71354 4.42975 4.50677 4.52035 4.56817 4.77073 4.81876 4.99919 5.05312 5.08774 5.15432 5.18120 5.20478 5.24166 5.29386 5.32550 5.37450 5.44573 5.52198 5.56082 5.64765 5.68049 5.72021 5.80430 5.86395 5.88327 5.93565 6.00334 6.13609 6.28532 6.30826 6.36031 6.46337 6.52231 6.63856 6.66006 6.72061 6.86181 6.95249 6.98425 7.47167 7.53620 7.65372 7.88426 8.25097 8.39449 9.25638 9.86633 10.52346 11.41518 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012794 B = 0.003227 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.992087 B = 8674.935473 C =10162.276307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.913 3.087 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.220 4.220 8 H 0.074 0.926 9 N -0.604 5.604 10 C 0.156 3.844 11 C -0.135 4.135 12 C -0.084 4.084 13 C 0.153 3.847 14 C -0.099 4.099 15 C -0.139 4.139 16 C 0.109 3.891 17 N -0.609 5.609 18 C 0.517 3.483 19 O -0.534 6.534 20 C -0.108 4.108 21 C -0.083 4.083 22 C -0.195 4.195 23 C 0.094 3.906 24 O -0.382 6.382 25 C 0.060 3.940 26 C -0.118 4.118 27 C 0.130 3.870 28 H 0.252 0.748 29 H 0.104 0.896 30 H 0.011 0.989 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.099 0.901 45 H 0.062 0.938 46 H 0.097 0.903 47 H 0.058 0.942 48 H 0.087 0.913 49 H 0.081 0.919 50 H 0.062 0.938 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.352 -20.804 -1.036 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.744 3.256 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.348 4.348 8 H 0.092 0.908 9 N -0.329 5.329 10 C 0.031 3.969 11 C -0.174 4.174 12 C -0.086 4.086 13 C 0.027 3.973 14 C -0.136 4.136 15 C -0.177 4.177 16 C -0.014 4.014 17 N -0.342 5.342 18 C 0.304 3.696 19 O -0.410 6.410 20 C -0.147 4.147 21 C -0.084 4.084 22 C -0.214 4.214 23 C 0.017 3.983 24 O -0.301 6.301 25 C -0.016 4.016 26 C -0.155 4.155 27 C 0.008 3.992 28 H 0.062 0.938 29 H 0.122 0.878 30 H 0.029 0.971 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.131 0.869 44 H 0.117 0.883 45 H 0.080 0.920 46 H 0.115 0.885 47 H 0.077 0.923 48 H 0.106 0.894 49 H 0.099 0.901 50 H 0.080 0.920 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.587 -20.422 -0.441 21.463 hybrid contribution -0.045 0.935 -0.296 0.982 sum 6.542 -19.487 -0.738 20.569 Atomic orbital electron populations 1.69793 1.04841 1.24768 1.57850 1.24761 0.95711 0.97610 1.02605 0.86172 0.78423 0.83158 0.77888 1.21287 1.21575 1.21176 1.19024 0.90415 0.82578 1.42808 0.90767 1.44546 1.01906 0.99724 1.86771 1.21904 0.84710 0.92299 0.97994 1.22992 0.95371 0.98934 1.00110 1.21355 0.98009 0.94412 0.94788 1.21225 0.93074 0.85361 0.97602 1.21323 0.96569 0.99750 0.95970 1.21929 1.00263 0.97233 0.98239 1.21656 1.01697 0.96624 0.81466 1.48179 1.18611 1.52602 1.14833 1.20441 0.82144 0.80663 0.86310 1.90708 1.78401 1.53455 1.18477 1.20843 0.93590 1.01178 0.99119 1.20420 0.95267 0.95422 0.97289 1.22635 1.00538 0.99029 0.99169 1.21356 0.85661 0.94755 0.96493 1.88085 1.31521 1.17523 1.92964 1.22642 0.99598 0.82709 0.96690 1.21049 0.96293 0.98725 0.99411 1.21581 0.89100 0.91266 0.97249 0.93763 0.87810 0.97094 0.92204 0.92020 0.96189 0.96225 0.92397 0.90816 0.90936 0.90825 0.90186 0.91477 0.88145 0.88492 0.86884 0.88278 0.92016 0.88481 0.92326 0.89440 0.90060 0.91969 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.13 10.09 55.49 0.56 -26.57 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.22 -6.26 10.28 -15.06 -0.15 -6.41 16 8 H 0.07 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -15.67 3.40 -170.23 -0.58 -16.25 16 10 C 0.16 3.77 5.57 -2.43 -0.01 3.75 16 11 C -0.13 -2.52 5.99 -24.88 -0.15 -2.67 16 12 C -0.08 -1.43 0.53 -154.09 -0.08 -1.51 16 13 C 0.15 3.28 6.14 -3.33 -0.02 3.26 16 14 C -0.10 -1.41 4.59 -27.04 -0.12 -1.53 16 15 C -0.14 -1.60 5.89 -26.77 -0.16 -1.76 16 16 C 0.11 1.07 6.30 -3.93 -0.02 1.04 16 17 N -0.61 -8.01 2.86 -173.38 -0.50 -8.51 16 18 C 0.52 7.25 7.69 -10.99 -0.08 7.17 16 19 O -0.53 -9.64 15.46 5.56 0.09 -9.56 16 20 C -0.11 -1.10 4.12 -29.03 -0.12 -1.22 16 21 C -0.08 -0.94 4.40 -100.93 -0.44 -1.39 16 22 C -0.20 -2.04 9.54 -35.97 -0.34 -2.38 16 23 C 0.09 0.92 7.05 35.78 0.25 1.17 16 24 O -0.38 -4.47 10.84 -35.23 -0.38 -4.86 16 25 C 0.06 0.66 6.89 37.23 0.26 0.91 16 26 C -0.12 -1.32 6.09 -27.97 -0.17 -1.49 16 27 C 0.13 1.98 5.01 -4.03 -0.02 1.96 16 28 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.10 2.86 5.88 -51.93 -0.31 2.55 16 30 H 0.01 0.28 7.78 -51.93 -0.40 -0.12 16 31 H 0.06 0.97 8.01 -51.93 -0.42 0.56 16 32 H 0.06 1.17 8.01 -51.93 -0.42 0.75 16 33 H 0.02 0.47 7.67 -51.93 -0.40 0.07 16 34 H 0.02 0.43 6.01 -51.93 -0.31 0.11 16 35 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 36 H 0.07 1.23 7.52 -51.93 -0.39 0.84 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.99 6.34 -51.93 -0.33 0.66 16 39 H 0.08 0.60 5.94 -51.93 -0.31 0.29 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.89 7.68 -51.93 -0.40 0.49 16 42 H 0.10 0.76 7.67 -51.93 -0.40 0.36 16 43 H 0.11 1.01 7.83 -52.48 -0.41 0.60 16 44 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 48 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.09 1.65 6.83 -51.93 -0.35 1.29 16 LS Contribution 385.78 15.07 5.81 5.81 Total: -1.00 -33.39 385.78 -10.13 -43.52 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -8.61 Total: 0.53 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -1.50 Total: -1.52 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.51 Total: -51.33 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.30 Total: -14.41 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.39 -10.13 -43.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054189428.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.455 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds