Wall clock time and date at job start Tue Mar 31 2020 19:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86808 * 119.99740 * 2 1 4 4 H 1.48497 * 109.46659 * 239.99596 * 3 2 1 5 5 H 1.48495 * 109.47212 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46997 * 119.99978 * 3 2 1 7 7 C 1.38806 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00316 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99938 * 359.97438 * 7 2 1 10 10 C 1.47487 * 125.65683 * 359.97438 * 9 7 2 11 11 C 1.55037 * 104.90309 * 204.02959 * 10 9 7 12 12 C 1.54486 * 101.52677 * 323.65706 * 11 10 9 13 13 C 1.47175 * 125.66402 * 179.97438 * 9 7 2 14 14 C 1.52226 * 110.28848 * 276.20827 * 12 11 10 15 15 C 1.53168 * 109.65473 * 178.01749 * 14 12 11 16 16 C 1.52759 * 109.34415 * 60.05092 * 15 14 12 17 17 N 1.46942 * 109.15682 * 304.99173 * 16 15 14 18 18 C 1.34779 * 120.70623 * 234.15977 * 17 16 15 19 19 O 1.21279 * 119.99792 * 179.71749 * 18 17 16 20 20 C 1.50697 * 119.99891 * 359.71341 * 18 17 16 21 21 C 1.50704 * 109.47066 * 180.02562 * 20 18 17 22 22 C 1.29982 * 118.74097 * 95.00410 * 21 20 18 23 23 C 1.50230 * 122.86664 * 180.41357 * 22 21 20 24 24 O 1.42901 * 110.13093 * 344.39596 * 23 22 21 25 25 C 1.43297 * 113.01904 * 50.18798 * 24 23 22 26 26 C 1.50380 * 118.74368 * 275.00490 * 21 20 18 27 27 C 1.47083 * 118.58743 * 53.87871 * 17 16 15 28 28 H 0.97002 * 119.99641 * 0.02562 * 1 2 3 29 29 H 1.08994 * 110.35597 * 322.88601 * 10 9 7 30 30 H 1.09001 * 110.35455 * 85.07037 * 10 9 7 31 31 H 1.08996 * 111.01438 * 205.59863 * 11 10 9 32 32 H 1.08997 * 111.01200 * 81.71385 * 11 10 9 33 33 H 1.09001 * 109.91249 * 59.08764 * 13 9 7 34 34 H 1.09003 * 110.07177 * 297.90832 * 13 9 7 35 35 H 1.09009 * 109.44414 * 298.07340 * 14 12 11 36 36 H 1.08997 * 109.44287 * 57.99654 * 14 12 11 37 37 H 1.09000 * 109.50590 * 180.10944 * 15 14 12 38 38 H 1.08997 * 109.50340 * 300.19329 * 15 14 12 39 39 H 1.09001 * 109.48258 * 185.07028 * 16 15 14 40 40 H 1.08997 * 109.41366 * 64.87308 * 16 15 14 41 41 H 1.09002 * 109.46993 * 60.00662 * 20 18 17 42 42 H 1.08999 * 109.47325 * 300.00317 * 20 18 17 43 43 H 1.08004 * 118.56458 * 0.40872 * 22 21 20 44 44 H 1.09002 * 109.35667 * 224.18962 * 23 22 21 45 45 H 1.08999 * 109.35889 * 104.60134 * 23 22 21 46 46 H 1.08999 * 109.67974 * 172.07335 * 25 24 23 47 47 H 1.08997 * 109.71781 * 51.53682 * 25 24 23 48 48 H 1.08996 * 109.45247 * 43.33474 * 26 21 20 49 49 H 1.08999 * 109.44903 * 283.40605 * 26 21 20 50 50 H 1.09005 * 109.57388 * 67.58857 * 27 17 16 51 51 H 1.08997 * 109.57774 * 187.84715 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 -0.1420 -2.5335 0.0028 11 6 -0.4034 -3.9343 0.6137 12 6 0.7808 -4.7458 0.0430 13 6 1.9322 -3.7290 0.0017 14 6 0.4527 -5.2446 -1.3573 15 6 1.6539 -6.0044 -1.9281 16 6 1.9738 -7.1958 -1.0270 17 7 2.1746 -6.7197 0.3486 18 6 3.3029 -7.0185 1.0224 19 8 3.4575 -6.6146 2.1555 20 6 4.3723 -7.8546 0.3680 21 6 5.5199 -8.0425 1.3266 22 6 5.5537 -9.1163 2.0583 23 6 6.6480 -9.3933 3.0496 24 8 7.7641 -8.5357 2.8025 25 6 7.3954 -7.1559 2.6857 26 6 6.5820 -6.9805 1.4002 27 6 1.1208 -5.9049 0.9722 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5992 -1.7597 0.6194 30 1 -0.5287 -2.4840 -1.0151 31 1 -1.3557 -4.3387 0.2708 32 1 -0.3646 -3.8992 1.7024 33 1 2.5656 -3.8499 0.8806 34 1 2.5223 -3.8728 -0.9034 35 1 -0.4096 -5.9100 -1.3127 36 1 0.2226 -4.3952 -2.0003 37 1 1.4172 -6.3587 -2.9314 38 1 2.5175 -5.3407 -1.9709 39 1 2.8816 -7.6851 -1.3800 40 1 1.1436 -7.9016 -1.0514 41 1 4.7281 -7.3509 -0.5308 42 1 3.9600 -8.8275 0.1003 43 1 4.7604 -9.8410 1.9488 44 1 6.9637 -10.4327 2.9583 45 1 6.2743 -9.2186 4.0585 46 1 8.2927 -6.5389 2.6395 47 1 6.7921 -6.8625 3.5448 48 1 6.1125 -5.9969 1.3991 49 1 7.2429 -7.0679 0.5378 50 1 0.2331 -6.5167 1.1329 51 1 1.4755 -5.5180 1.9275 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054189428.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:46 Heat of formation + Delta-G solvation = -60.855859 kcal Electronic energy + Delta-G solvation = -30353.421904 eV Core-core repulsion = 26445.588268 eV Total energy + Delta-G solvation = -3907.833637 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.69188 -40.49244 -39.57192 -37.28664 -35.70490 -34.82665 -33.10963 -32.13051 -32.04492 -30.68660 -29.66093 -27.50491 -26.56673 -25.64834 -24.94319 -24.34508 -23.20387 -22.15035 -20.54489 -19.28785 -19.00100 -18.92151 -18.07864 -17.44583 -17.25204 -16.94069 -16.49410 -16.43395 -16.25250 -15.91117 -15.70068 -15.17406 -14.89088 -14.64088 -14.42851 -14.26213 -14.10344 -13.88335 -13.79537 -13.65195 -13.41693 -13.29080 -13.24629 -12.90463 -12.80128 -12.72830 -12.28193 -12.25461 -12.16209 -12.11686 -12.04040 -11.71820 -11.59012 -11.53779 -11.31708 -11.14791 -10.81329 -10.75311 -10.62960 -9.78033 -9.55154 -8.90752 -7.80953 -5.24960 1.08253 1.41525 1.45111 1.51619 1.66150 2.13727 2.45965 2.91249 3.27349 3.55593 3.61501 3.64829 3.74444 3.77086 3.93231 3.96085 4.02033 4.13615 4.21145 4.23054 4.31839 4.40037 4.45524 4.51690 4.55479 4.57293 4.58890 4.63103 4.67870 4.73681 4.77790 4.78983 4.82867 4.87163 4.91717 4.95344 5.00274 5.04493 5.16156 5.22499 5.39202 5.46913 5.48828 5.51762 5.56791 5.64822 5.80606 5.85666 6.13803 6.28349 6.48472 7.08245 7.22325 7.75549 8.39915 9.20417 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012794 B = 0.003227 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.992087 B = 8674.935473 C =10162.276307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.064 4.064 3 Si 0.979 3.021 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.280 1.280 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.626 5.626 10 C 0.159 3.841 11 C -0.123 4.123 12 C -0.070 4.070 13 C 0.157 3.843 14 C -0.096 4.096 15 C -0.134 4.134 16 C 0.107 3.893 17 N -0.609 5.609 18 C 0.509 3.491 19 O -0.585 6.585 20 C -0.097 4.097 21 C -0.109 4.109 22 C -0.192 4.192 23 C 0.085 3.915 24 O -0.394 6.394 25 C 0.059 3.941 26 C -0.118 4.118 27 C 0.138 3.862 28 H 0.248 0.752 29 H 0.066 0.934 30 H -0.007 1.007 31 H 0.094 0.906 32 H 0.054 0.946 33 H -0.008 1.008 34 H 0.020 0.980 35 H 0.090 0.910 36 H 0.044 0.956 37 H 0.105 0.895 38 H 0.047 0.953 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.125 0.875 45 H 0.061 0.939 46 H 0.111 0.889 47 H 0.043 0.957 48 H 0.064 0.936 49 H 0.093 0.907 50 H 0.092 0.908 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.454 -23.904 -2.548 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.807 3.193 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.352 5.352 10 C 0.035 3.965 11 C -0.162 4.162 12 C -0.072 4.072 13 C 0.032 3.968 14 C -0.134 4.134 15 C -0.172 4.172 16 C -0.015 4.015 17 N -0.341 5.341 18 C 0.299 3.701 19 O -0.466 6.466 20 C -0.137 4.137 21 C -0.109 4.109 22 C -0.210 4.210 23 C 0.009 3.991 24 O -0.313 6.313 25 C -0.018 4.018 26 C -0.155 4.155 27 C 0.014 3.986 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.011 0.989 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.010 0.990 34 H 0.038 0.962 35 H 0.109 0.891 36 H 0.063 0.937 37 H 0.123 0.877 38 H 0.065 0.935 39 H 0.130 0.870 40 H 0.116 0.884 41 H 0.134 0.866 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.143 0.857 45 H 0.079 0.921 46 H 0.129 0.871 47 H 0.062 0.938 48 H 0.083 0.917 49 H 0.112 0.888 50 H 0.110 0.890 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.691 -23.560 -1.987 24.572 hybrid contribution -0.064 1.918 0.203 1.930 sum 6.627 -21.642 -1.784 22.704 Atomic orbital electron populations 1.70053 1.06055 1.25136 1.58325 1.25603 0.96693 1.00810 1.02509 0.85153 0.77240 0.78830 0.78125 1.20278 1.21403 1.20663 1.19350 0.90690 0.84185 1.43102 0.91161 1.44868 1.02954 1.00725 1.86654 1.21681 0.83676 0.94652 0.96534 1.22859 0.97905 0.95931 0.99463 1.21279 0.94835 0.93749 0.97313 1.21296 0.94522 0.84912 0.96084 1.21318 0.99252 0.99654 0.93145 1.21913 0.97755 0.97210 1.00328 1.21972 1.04577 0.96169 0.78732 1.48302 1.17834 1.51797 1.16207 1.21206 0.82690 0.80376 0.85849 1.90689 1.79361 1.55536 1.20976 1.20865 0.91833 1.02174 0.98784 1.20595 0.95902 0.95730 0.98691 1.22896 1.00788 0.99096 0.98192 1.21602 0.85372 0.95719 0.96422 1.88064 1.32558 1.17711 1.93006 1.22663 1.00030 0.82948 0.96117 1.21019 0.96694 0.97832 0.99939 1.21319 0.90782 0.91250 0.95209 0.94215 0.91554 0.98921 0.88765 0.92702 0.98979 0.96185 0.89127 0.93747 0.87671 0.93457 0.87025 0.88388 0.86580 0.85000 0.84989 0.85743 0.92077 0.87101 0.93848 0.91695 0.88832 0.89007 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.71 10.09 21.65 0.22 -57.49 16 2 C -0.06 -3.73 5.49 84.86 0.47 -3.27 16 3 Si 0.98 47.23 29.55 68.60 2.03 49.26 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 7 C -0.24 -14.50 10.28 84.03 0.86 -13.64 16 8 H 0.07 4.09 7.83 -2.91 -0.02 4.06 16 9 N -0.63 -34.04 3.40 -692.48 -2.36 -36.39 16 10 C 0.16 8.04 5.57 86.89 0.48 8.52 16 11 C -0.12 -4.58 5.99 31.80 0.19 -4.39 16 12 C -0.07 -2.34 0.53 -51.91 -0.03 -2.37 16 13 C 0.16 6.97 6.14 86.47 0.53 7.50 16 14 C -0.10 -2.52 4.59 30.39 0.14 -2.38 16 15 C -0.13 -2.64 5.89 30.57 0.18 -2.46 16 16 C 0.11 1.59 6.30 86.22 0.54 2.13 16 17 N -0.61 -14.56 2.86 -820.83 -2.35 -16.91 16 18 C 0.51 13.60 7.69 87.66 0.67 14.28 16 19 O -0.59 -21.58 15.46 -3.03 -0.05 -21.62 16 20 C -0.10 -1.70 4.12 29.10 0.12 -1.58 16 21 C -0.11 -2.28 4.40 -15.54 -0.07 -2.35 16 22 C -0.19 -3.59 9.54 26.55 0.25 -3.33 16 23 C 0.08 1.53 7.05 71.09 0.50 2.03 16 24 O -0.39 -8.89 10.84 -148.98 -1.62 -10.50 16 25 C 0.06 1.30 6.89 72.03 0.50 1.80 16 26 C -0.12 -2.62 6.09 29.79 0.18 -2.44 16 27 C 0.14 4.00 5.01 86.07 0.43 4.43 16 28 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 29 H 0.07 3.85 5.88 -2.39 -0.01 3.84 16 30 H -0.01 -0.38 7.78 -2.39 -0.02 -0.40 16 31 H 0.09 2.88 8.01 -2.39 -0.02 2.86 16 32 H 0.05 2.11 8.01 -2.39 -0.02 2.09 16 33 H -0.01 -0.39 7.67 -2.39 -0.02 -0.40 16 34 H 0.02 0.90 6.01 -2.39 -0.01 0.88 16 35 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.04 1.43 7.52 -2.39 -0.02 1.42 16 37 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 1.19 6.34 -2.39 -0.02 1.17 16 39 H 0.11 1.02 5.94 -2.39 -0.01 1.01 16 40 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.12 1.67 7.68 -2.39 -0.02 1.65 16 42 H 0.13 1.38 7.67 -2.39 -0.02 1.36 16 43 H 0.13 1.92 7.83 -2.91 -0.02 1.90 16 44 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.04 1.06 8.10 -2.39 -0.02 1.04 16 48 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 51 H 0.06 2.09 6.83 -2.39 -0.02 2.07 16 Total: -1.00 -78.75 385.78 2.74 -76.01 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.91 Total: 15.18 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 5.96 Total: 2.48 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -4.48 Total: -110.79 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -1.66 Total: -32.12 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -78.75 2.74 -76.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054189428.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.150 kcal (2) G-P(sol) polarization free energy of solvation -78.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds