Wall clock time and date at job start Tue Mar 31 2020 19:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86792 * 120.00205 * 2 1 4 4 H 1.48505 * 109.46800 * 274.98784 * 3 2 1 5 5 H 1.48498 * 109.47161 * 34.98550 * 3 2 1 6 6 H 1.48496 * 109.47237 * 154.98696 * 3 2 1 7 7 C 1.38810 * 119.99453 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99761 * 202.29458 * 7 2 1 9 9 N 1.36937 * 120.00744 * 22.30912 * 7 2 1 10 10 C 1.47175 * 121.21988 * 27.46608 * 9 7 2 11 11 C 1.53239 * 108.69220 * 129.03577 * 10 9 7 12 12 O 1.43067 * 109.44528 * 51.58381 * 11 10 9 13 13 C 1.42685 * 113.88078 * 298.35349 * 12 11 10 14 14 H 1.09002 * 108.38955 * 304.72348 * 13 12 11 15 15 C 1.52502 * 110.62657 * 185.34583 * 13 12 11 16 16 C 1.53153 * 109.79995 * 298.70474 * 15 13 12 17 17 N 1.46994 * 108.61545 * 305.36252 * 16 15 13 18 18 C 1.34771 * 120.72386 * 234.63597 * 17 16 15 19 19 O 1.21279 * 119.99923 * 174.15762 * 18 17 16 20 20 C 1.50704 * 120.00012 * 354.15724 * 18 17 16 21 21 C 1.52996 * 112.84933 * 294.34578 * 20 18 17 22 22 C 1.53004 * 117.50144 * 4.99367 * 21 20 18 23 23 C 1.53000 * 117.50217 * 296.33383 * 21 20 18 24 24 C 1.53779 * 113.61050 * 163.04403 * 20 18 17 25 25 C 1.53781 * 87.07992 * 220.01613 * 24 20 18 26 26 C 1.53770 * 113.61572 * 65.54562 * 20 18 17 27 27 C 1.47208 * 118.27714 * 54.44497 * 17 16 15 28 28 C 1.47593 * 121.23036 * 207.45414 * 9 7 2 29 29 H 1.09005 * 111.15941 * 352.81909 * 28 9 7 30 30 H 0.96995 * 119.99852 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.60475 * 248.79527 * 10 9 7 32 32 H 1.08999 * 109.60239 * 9.27201 * 10 9 7 33 33 H 1.08997 * 109.47161 * 171.58225 * 11 10 9 34 34 H 1.09004 * 109.47152 * 291.59098 * 11 10 9 35 35 H 1.09006 * 109.41975 * 178.60246 * 15 13 12 36 36 H 1.09002 * 109.36165 * 58.77490 * 15 13 12 37 37 H 1.08999 * 109.64288 * 65.15302 * 16 15 13 38 38 H 1.09002 * 109.64352 * 185.57279 * 16 15 13 39 39 H 1.08996 * 115.55382 * 150.66206 * 21 20 18 40 40 H 1.09001 * 117.49416 * 359.97438 * 22 21 20 41 41 H 1.08993 * 117.50175 * 145.02150 * 22 21 20 42 42 H 1.09004 * 117.50244 * 214.98118 * 23 21 20 43 43 H 1.09007 * 117.49756 * 359.97438 * 23 21 20 44 44 H 1.09004 * 113.61688 * 334.56028 * 24 20 18 45 45 H 1.08997 * 113.61913 * 105.47382 * 24 20 18 46 46 H 1.09002 * 113.61710 * 270.88464 * 25 24 20 47 47 H 1.09003 * 113.61760 * 139.97591 * 25 24 20 48 48 H 1.09000 * 113.61720 * 254.52866 * 26 20 18 49 49 H 1.09006 * 113.61945 * 25.42683 * 26 20 18 50 50 H 1.09002 * 109.43972 * 185.90117 * 27 17 16 51 51 H 1.08999 * 109.53310 * 65.82070 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3923 2.1071 -1.3948 5 1 1.5044 2.6199 0.8027 6 1 3.5965 1.4119 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0296 -1.2371 0.3554 9 7 1.4024 -2.3440 -0.4491 10 6 0.3238 -2.2909 -1.4489 11 6 0.6579 -3.2648 -2.5839 12 8 0.9606 -4.5506 -2.0346 13 6 2.0935 -4.5560 -1.1672 14 1 2.9440 -4.1431 -1.7098 15 6 2.4286 -5.9781 -0.7300 16 6 1.2487 -6.5749 0.0426 17 7 0.9083 -5.6714 1.1510 18 6 0.8582 -6.1254 2.4189 19 8 0.6809 -5.3497 3.3342 20 6 1.0225 -7.5970 2.6994 21 6 -0.1208 -8.4410 2.1327 22 6 -1.1749 -7.7252 1.2856 23 6 -1.5224 -8.2026 2.6978 24 6 1.3531 -7.9109 4.1681 25 6 2.3298 -8.9743 3.6389 26 6 2.4191 -8.1382 2.3513 27 6 0.6288 -4.2600 0.8395 28 6 1.8051 -3.6730 0.0509 29 1 2.6887 -3.6035 0.6854 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6194 -2.5798 -0.9851 32 1 0.2434 -1.2794 -1.8469 33 1 -0.1972 -3.3482 -3.2546 34 1 1.5201 -2.8943 -3.1386 35 1 3.3104 -5.9620 -0.0893 36 1 2.6315 -6.5884 -1.6101 37 1 0.3908 -6.6792 -0.6217 38 1 1.5264 -7.5519 0.4384 39 1 0.1420 -9.4611 1.8525 40 1 -1.0540 -6.6528 1.1325 41 1 -1.6057 -8.2744 0.4485 42 1 -2.1819 -9.0658 2.7892 43 1 -1.6300 -7.4446 3.4738 44 1 1.8432 -7.0894 4.6906 45 1 0.5140 -8.3275 4.7251 46 1 1.8727 -9.9531 3.4931 47 1 3.2665 -9.0219 4.1943 48 1 2.4405 -8.7384 1.4416 49 1 3.2007 -7.3789 2.3770 50 1 0.4979 -3.7028 1.7671 51 1 -0.2804 -4.1918 0.2422 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074304420.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:52 Heat of formation + Delta-G solvation = 7.448008 kcal Electronic energy + Delta-G solvation = -31883.218128 eV Core-core repulsion = 27978.346370 eV Total energy + Delta-G solvation = -3904.871759 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.15365 -39.25530 -37.50848 -36.08384 -35.53070 -34.62188 -31.71580 -31.49621 -29.61069 -27.79018 -26.69813 -25.83120 -24.59157 -23.80738 -22.80499 -22.32900 -22.13580 -21.43473 -20.15437 -18.68724 -17.90701 -16.98839 -16.74601 -16.21424 -15.78004 -15.45636 -15.15351 -15.03950 -14.89086 -14.46687 -14.07978 -13.93596 -13.54921 -13.38230 -13.16025 -12.82238 -12.68158 -12.54281 -12.35278 -12.14238 -11.98200 -11.91104 -11.51566 -11.35503 -11.20140 -11.09658 -10.94358 -10.79192 -10.74067 -10.65428 -10.55326 -10.27039 -10.22455 -10.15988 -9.99378 -9.92943 -9.60947 -9.19610 -9.00009 -8.55121 -8.16486 -6.76536 -5.88559 -3.29731 2.92803 3.30549 3.35410 3.42359 3.43902 3.62972 4.26614 4.33027 4.41763 4.51226 4.57686 4.69241 4.82692 4.93184 5.00054 5.06748 5.12240 5.23053 5.27147 5.33045 5.44670 5.50943 5.57557 5.64700 5.66913 5.70359 5.74667 5.79255 5.82541 5.86738 5.94847 6.02905 6.03891 6.06813 6.08154 6.12256 6.17159 6.19569 6.30311 6.31919 6.35017 6.42912 6.71664 6.78111 6.98834 7.03299 7.39046 7.73365 7.84128 7.87028 8.28804 8.55221 9.06739 9.69725 10.28514 11.19290 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016424 B = 0.003856 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.380944 B = 7259.303791 C = 7732.217739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.010 3.990 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.261 4.261 8 H 0.068 0.932 9 N -0.582 5.582 10 C 0.140 3.860 11 C 0.040 3.960 12 O -0.387 6.387 13 C 0.081 3.919 14 H 0.050 0.950 15 C -0.124 4.124 16 C 0.109 3.891 17 N -0.602 5.602 18 C 0.527 3.473 19 O -0.542 6.542 20 C -0.074 4.074 21 C -0.128 4.128 22 C -0.183 4.183 23 C -0.175 4.175 24 C -0.110 4.110 25 C -0.139 4.139 26 C -0.124 4.124 27 C 0.105 3.895 28 C 0.136 3.864 29 H 0.073 0.927 30 H 0.255 0.745 31 H 0.030 0.970 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.069 0.931 48 H 0.077 0.923 49 H 0.086 0.914 50 H 0.087 0.913 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.008 -19.770 -0.124 19.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.190 4.190 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.390 4.390 8 H 0.086 0.914 9 N -0.305 5.305 10 C 0.014 3.986 11 C -0.037 4.037 12 O -0.306 6.306 13 C 0.022 3.978 14 H 0.068 0.932 15 C -0.162 4.162 16 C -0.013 4.013 17 N -0.335 5.335 18 C 0.314 3.686 19 O -0.419 6.419 20 C -0.077 4.077 21 C -0.146 4.146 22 C -0.220 4.220 23 C -0.212 4.212 24 C -0.148 4.148 25 C -0.177 4.177 26 C -0.161 4.161 27 C -0.018 4.018 28 C 0.028 3.972 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.108 0.892 45 H 0.091 0.909 46 H 0.100 0.900 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.105 0.895 50 H 0.105 0.895 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.688 -19.301 0.332 19.378 hybrid contribution 0.403 1.286 -0.097 1.351 sum 2.091 -18.015 0.235 18.137 Atomic orbital electron populations 1.70106 1.05351 1.25844 1.52233 1.25034 0.95146 0.98608 1.00233 0.86294 0.79415 0.83630 0.77602 1.21376 1.21713 1.20260 1.19140 0.94621 0.85151 1.40079 0.91405 1.44284 1.41994 1.00207 1.43986 1.21375 0.90518 0.98504 0.88179 1.23292 0.99304 0.84408 0.96735 1.87711 1.48730 1.30671 1.63486 1.22237 0.88658 0.94733 0.92200 0.93171 1.21812 0.98379 0.95929 1.00107 1.21802 0.97857 0.92999 0.88688 1.48386 1.68140 1.10995 1.05965 1.20267 0.76298 0.89632 0.82408 1.90691 1.49549 1.57805 1.43883 1.21592 0.95621 0.91672 0.98857 1.21842 0.88795 0.99085 1.04874 1.23361 1.02133 1.02233 0.94246 1.22967 0.97119 1.03445 0.97688 1.22816 0.99316 0.98743 0.93944 1.22831 0.99906 0.97886 0.97064 1.23044 0.95063 0.99548 0.98482 1.22383 0.99708 0.78593 1.01133 1.21562 0.96155 0.86796 0.92719 0.90867 0.93480 0.95212 0.89582 0.90131 0.94070 0.90632 0.90559 0.90835 0.89585 0.86970 0.87430 0.88598 0.88768 0.88646 0.89165 0.90944 0.90010 0.91214 0.90419 0.89504 0.89485 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.57 11.61 55.49 0.64 -24.93 16 2 C 0.01 0.27 4.79 -17.43 -0.08 0.19 16 3 Si 0.90 21.52 29.61 -169.99 -5.03 16.49 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.26 -7.06 9.65 -15.06 -0.15 -7.21 16 8 H 0.07 1.83 7.92 -52.49 -0.42 1.42 16 9 N -0.58 -14.20 2.70 -163.87 -0.44 -14.64 16 10 C 0.14 3.22 4.96 -3.55 -0.02 3.20 16 11 C 0.04 0.76 6.97 37.28 0.26 1.02 16 12 O -0.39 -7.04 9.59 -35.23 -0.34 -7.38 16 13 C 0.08 1.41 2.73 -26.89 -0.07 1.34 16 14 H 0.05 0.91 8.11 -51.93 -0.42 0.49 16 15 C -0.12 -1.64 5.82 -26.91 -0.16 -1.79 16 16 C 0.11 1.42 4.18 -3.69 -0.02 1.40 16 17 N -0.60 -9.80 1.81 -172.44 -0.31 -10.11 16 18 C 0.53 8.77 5.44 -10.99 -0.06 8.71 16 19 O -0.54 -11.48 15.61 5.56 0.09 -11.39 16 20 C -0.07 -0.89 0.47 -154.85 -0.07 -0.96 16 21 C -0.13 -1.32 4.31 -90.62 -0.39 -1.71 16 22 C -0.18 -2.12 8.09 -26.69 -0.22 -2.34 16 23 C -0.18 -1.92 10.03 -26.69 -0.27 -2.19 16 24 C -0.11 -1.26 6.86 -25.92 -0.18 -1.44 16 25 C -0.14 -1.20 7.81 -25.92 -0.20 -1.41 16 26 C -0.12 -1.20 5.69 -25.92 -0.15 -1.35 16 27 C 0.11 2.15 5.64 -3.50 -0.02 2.13 16 28 C 0.14 2.83 3.00 -67.08 -0.20 2.63 16 29 H 0.07 1.59 8.03 -51.93 -0.42 1.17 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.03 0.73 7.17 -51.93 -0.37 0.36 16 32 H 0.09 2.18 6.41 -51.93 -0.33 1.85 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.04 0.77 8.13 -51.93 -0.42 0.35 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.99 7.43 -51.93 -0.39 0.61 16 38 H 0.09 0.91 3.63 -51.93 -0.19 0.72 16 39 H 0.11 0.93 8.11 -51.93 -0.42 0.50 16 40 H 0.11 1.58 5.35 -51.93 -0.28 1.31 16 41 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.10 1.24 8.14 -51.92 -0.42 0.82 16 44 H 0.09 1.20 7.72 -51.93 -0.40 0.80 16 45 H 0.07 0.79 8.02 -51.93 -0.42 0.37 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.08 0.62 7.01 -51.93 -0.36 0.25 16 49 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 50 H 0.09 2.11 7.02 -51.93 -0.36 1.75 16 51 H 0.07 1.46 6.56 -51.93 -0.34 1.12 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -30.82 376.89 -10.18 -41.00 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -8.48 Total: 5.05 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -1.99 Total: 0.23 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.11 Total: -49.68 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.25 Total: -18.77 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.82 -10.18 -41.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074304420.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.452 kcal (2) G-P(sol) polarization free energy of solvation -30.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds