Wall clock time and date at job start Tue Mar 31 2020 19:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86792 * 120.00205 * 2 1 4 4 H 1.48505 * 109.46800 * 274.98784 * 3 2 1 5 5 H 1.48498 * 109.47161 * 34.98550 * 3 2 1 6 6 H 1.48496 * 109.47237 * 154.98696 * 3 2 1 7 7 C 1.38810 * 119.99453 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99761 * 202.29458 * 7 2 1 9 9 N 1.36937 * 120.00744 * 22.30912 * 7 2 1 10 10 C 1.47175 * 121.21988 * 27.46608 * 9 7 2 11 11 C 1.53239 * 108.69220 * 129.03577 * 10 9 7 12 12 O 1.43067 * 109.44528 * 51.58381 * 11 10 9 13 13 C 1.42685 * 113.88078 * 298.35349 * 12 11 10 14 14 H 1.09002 * 108.38955 * 304.72348 * 13 12 11 15 15 C 1.52502 * 110.62657 * 185.34583 * 13 12 11 16 16 C 1.53153 * 109.79995 * 298.70474 * 15 13 12 17 17 N 1.46994 * 108.61545 * 305.36252 * 16 15 13 18 18 C 1.34771 * 120.72386 * 234.63597 * 17 16 15 19 19 O 1.21279 * 119.99923 * 174.15762 * 18 17 16 20 20 C 1.50704 * 120.00012 * 354.15724 * 18 17 16 21 21 C 1.52996 * 112.84933 * 294.34578 * 20 18 17 22 22 C 1.53004 * 117.50144 * 4.99367 * 21 20 18 23 23 C 1.53000 * 117.50217 * 296.33383 * 21 20 18 24 24 C 1.53779 * 113.61050 * 163.04403 * 20 18 17 25 25 C 1.53781 * 87.07992 * 220.01613 * 24 20 18 26 26 C 1.53770 * 113.61572 * 65.54562 * 20 18 17 27 27 C 1.47208 * 118.27714 * 54.44497 * 17 16 15 28 28 C 1.47593 * 121.23036 * 207.45414 * 9 7 2 29 29 H 1.09005 * 111.15941 * 352.81909 * 28 9 7 30 30 H 0.96995 * 119.99852 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.60475 * 248.79527 * 10 9 7 32 32 H 1.08999 * 109.60239 * 9.27201 * 10 9 7 33 33 H 1.08997 * 109.47161 * 171.58225 * 11 10 9 34 34 H 1.09004 * 109.47152 * 291.59098 * 11 10 9 35 35 H 1.09006 * 109.41975 * 178.60246 * 15 13 12 36 36 H 1.09002 * 109.36165 * 58.77490 * 15 13 12 37 37 H 1.08999 * 109.64288 * 65.15302 * 16 15 13 38 38 H 1.09002 * 109.64352 * 185.57279 * 16 15 13 39 39 H 1.08996 * 115.55382 * 150.66206 * 21 20 18 40 40 H 1.09001 * 117.49416 * 359.97438 * 22 21 20 41 41 H 1.08993 * 117.50175 * 145.02150 * 22 21 20 42 42 H 1.09004 * 117.50244 * 214.98118 * 23 21 20 43 43 H 1.09007 * 117.49756 * 359.97438 * 23 21 20 44 44 H 1.09004 * 113.61688 * 334.56028 * 24 20 18 45 45 H 1.08997 * 113.61913 * 105.47382 * 24 20 18 46 46 H 1.09002 * 113.61710 * 270.88464 * 25 24 20 47 47 H 1.09003 * 113.61760 * 139.97591 * 25 24 20 48 48 H 1.09000 * 113.61720 * 254.52866 * 26 20 18 49 49 H 1.09006 * 113.61945 * 25.42683 * 26 20 18 50 50 H 1.09002 * 109.43972 * 185.90117 * 27 17 16 51 51 H 1.08999 * 109.53310 * 65.82070 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3923 2.1071 -1.3948 5 1 1.5044 2.6199 0.8027 6 1 3.5965 1.4119 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0296 -1.2371 0.3554 9 7 1.4024 -2.3440 -0.4491 10 6 0.3238 -2.2909 -1.4489 11 6 0.6579 -3.2648 -2.5839 12 8 0.9606 -4.5506 -2.0346 13 6 2.0935 -4.5560 -1.1672 14 1 2.9440 -4.1431 -1.7098 15 6 2.4286 -5.9781 -0.7300 16 6 1.2487 -6.5749 0.0426 17 7 0.9083 -5.6714 1.1510 18 6 0.8582 -6.1254 2.4189 19 8 0.6809 -5.3497 3.3342 20 6 1.0225 -7.5970 2.6994 21 6 -0.1208 -8.4410 2.1327 22 6 -1.1749 -7.7252 1.2856 23 6 -1.5224 -8.2026 2.6978 24 6 1.3531 -7.9109 4.1681 25 6 2.3298 -8.9743 3.6389 26 6 2.4191 -8.1382 2.3513 27 6 0.6288 -4.2600 0.8395 28 6 1.8051 -3.6730 0.0509 29 1 2.6887 -3.6035 0.6854 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6194 -2.5798 -0.9851 32 1 0.2434 -1.2794 -1.8469 33 1 -0.1972 -3.3482 -3.2546 34 1 1.5201 -2.8943 -3.1386 35 1 3.3104 -5.9620 -0.0893 36 1 2.6315 -6.5884 -1.6101 37 1 0.3908 -6.6792 -0.6217 38 1 1.5264 -7.5519 0.4384 39 1 0.1420 -9.4611 1.8525 40 1 -1.0540 -6.6528 1.1325 41 1 -1.6057 -8.2744 0.4485 42 1 -2.1819 -9.0658 2.7892 43 1 -1.6300 -7.4446 3.4738 44 1 1.8432 -7.0894 4.6906 45 1 0.5140 -8.3275 4.7251 46 1 1.8727 -9.9531 3.4931 47 1 3.2665 -9.0219 4.1943 48 1 2.4405 -8.7384 1.4416 49 1 3.2007 -7.3789 2.3770 50 1 0.4979 -3.7028 1.7671 51 1 -0.2804 -4.1918 0.2422 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074304420.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:51 Heat of formation + Delta-G solvation = -10.668015 kcal Electronic energy + Delta-G solvation = -31884.003698 eV Core-core repulsion = 27978.346370 eV Total energy + Delta-G solvation = -3905.657328 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.30291 -40.70034 -38.79166 -37.28568 -36.62872 -36.44695 -33.52605 -33.04601 -31.18111 -29.46986 -27.96035 -26.71256 -25.87803 -25.58760 -24.41492 -23.30684 -23.10647 -22.78526 -21.38698 -20.10405 -19.18364 -18.84718 -17.98094 -17.25363 -17.13714 -17.08118 -16.83517 -16.27173 -16.23004 -15.93458 -15.56219 -15.28861 -14.95558 -14.76543 -14.49008 -14.36272 -13.97829 -13.91630 -13.61496 -13.30571 -13.19543 -13.18681 -12.95808 -12.82763 -12.68046 -12.44903 -12.36887 -12.25774 -12.14192 -12.09860 -11.88847 -11.73505 -11.49815 -11.41854 -11.20423 -11.10821 -10.84139 -10.79988 -10.54013 -10.40886 -9.65679 -8.74709 -7.98548 -5.43640 1.41005 1.41906 1.51992 1.61799 1.98550 2.43643 2.74053 2.87697 3.14759 3.37864 3.42521 3.59109 3.70282 3.74386 3.89096 3.95007 4.01251 4.13052 4.13385 4.18516 4.21560 4.25268 4.29703 4.42522 4.50551 4.53932 4.62194 4.69564 4.79134 4.79986 4.82903 4.84033 4.88327 4.91881 4.97202 5.02272 5.03355 5.07728 5.15167 5.17507 5.22216 5.25801 5.28701 5.32605 5.45679 5.49656 5.55192 5.60004 6.22317 6.32676 6.53032 6.99257 7.20745 7.66833 8.22859 9.06669 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016424 B = 0.003856 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.380944 B = 7259.303791 C = 7732.217739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.040 4.040 3 Si 0.967 3.033 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.273 4.273 8 H 0.063 0.937 9 N -0.600 5.600 10 C 0.147 3.853 11 C 0.054 3.946 12 O -0.380 6.380 13 C 0.087 3.913 14 H 0.050 0.950 15 C -0.117 4.117 16 C 0.109 3.891 17 N -0.597 5.597 18 C 0.519 3.481 19 O -0.603 6.603 20 C -0.077 4.077 21 C -0.108 4.108 22 C -0.192 4.192 23 C -0.181 4.181 24 C -0.123 4.123 25 C -0.118 4.118 26 C -0.119 4.119 27 C 0.126 3.874 28 C 0.133 3.867 29 H 0.057 0.943 30 H 0.252 0.748 31 H 0.001 0.999 32 H 0.058 0.942 33 H 0.110 0.890 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.075 0.925 38 H 0.123 0.877 39 H 0.157 0.843 40 H 0.068 0.932 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.111 0.889 47 H 0.078 0.922 48 H 0.113 0.887 49 H 0.074 0.926 50 H 0.032 0.968 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.726 -24.196 -2.001 24.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.237 4.237 3 Si 0.794 3.206 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.195 1.195 7 C -0.403 4.403 8 H 0.081 0.919 9 N -0.323 5.323 10 C 0.022 3.978 11 C -0.024 4.024 12 O -0.299 6.299 13 C 0.028 3.972 14 H 0.068 0.932 15 C -0.156 4.156 16 C -0.012 4.012 17 N -0.328 5.328 18 C 0.309 3.691 19 O -0.484 6.484 20 C -0.080 4.080 21 C -0.126 4.126 22 C -0.229 4.229 23 C -0.218 4.218 24 C -0.161 4.161 25 C -0.155 4.155 26 C -0.157 4.157 27 C 0.001 3.999 28 C 0.025 3.975 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.019 0.981 32 H 0.076 0.924 33 H 0.128 0.872 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.133 0.867 37 H 0.093 0.907 38 H 0.141 0.859 39 H 0.175 0.825 40 H 0.086 0.914 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.129 0.871 47 H 0.097 0.903 48 H 0.131 0.869 49 H 0.092 0.908 50 H 0.051 0.949 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.432 -23.783 -1.576 24.081 hybrid contribution -0.187 2.706 0.601 2.778 sum 3.246 -21.078 -0.975 21.348 Atomic orbital electron populations 1.70247 1.06801 1.26236 1.53862 1.25790 0.95861 1.01636 1.00433 0.85275 0.78224 0.79389 0.77703 1.20474 1.22270 1.19452 1.19416 0.94654 0.86584 1.39634 0.91882 1.44522 1.42065 1.00957 1.44786 1.21232 0.89175 0.98317 0.89123 1.23131 1.00754 0.83514 0.95008 1.87730 1.49114 1.29819 1.63256 1.22261 0.88207 0.96838 0.89920 0.93180 1.21888 0.98660 0.93180 1.01834 1.22095 0.97971 0.93574 0.87542 1.48387 1.67742 1.09406 1.07307 1.21337 0.74587 0.91721 0.81471 1.90659 1.52139 1.59922 1.45715 1.21792 0.98366 0.87965 0.99854 1.22020 0.87275 1.00157 1.03119 1.23291 1.03795 1.00417 0.95408 1.22976 0.98852 1.03573 0.96393 1.22857 1.00432 0.99274 0.93518 1.22802 0.99367 0.97788 0.95545 1.23099 0.92237 0.99548 1.00780 1.21744 0.98976 0.81270 0.97933 1.21708 0.95137 0.86162 0.94469 0.92442 0.93873 0.98132 0.92359 0.87193 0.93342 0.89299 0.86674 0.90701 0.85914 0.82550 0.91373 0.86090 0.85957 0.92039 0.92291 0.90715 0.87057 0.90290 0.86887 0.90770 0.94934 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.11 11.61 21.65 0.25 -55.86 16 2 C -0.04 -2.30 4.79 84.86 0.41 -1.90 16 3 Si 0.97 45.79 29.61 68.60 2.03 47.82 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.27 -15.51 9.65 84.03 0.81 -14.70 16 8 H 0.06 3.56 7.92 -2.91 -0.02 3.53 16 9 N -0.60 -30.82 2.70 -672.35 -1.82 -32.63 16 10 C 0.15 7.10 4.96 86.33 0.43 7.53 16 11 C 0.05 1.98 6.97 72.06 0.50 2.48 16 12 O -0.38 -13.21 9.59 -148.98 -1.43 -14.64 16 13 C 0.09 2.91 2.73 30.49 0.08 3.00 16 14 H 0.05 1.72 8.11 -2.39 -0.02 1.70 16 15 C -0.12 -2.68 5.82 30.48 0.18 -2.50 16 16 C 0.11 2.52 4.18 86.34 0.36 2.88 16 17 N -0.60 -19.88 1.81 -817.87 -1.48 -21.35 16 18 C 0.52 17.95 5.44 87.66 0.48 18.43 16 19 O -0.60 -27.97 15.61 -3.03 -0.05 -28.02 16 20 C -0.08 -1.71 0.47 -52.41 -0.02 -1.73 16 21 C -0.11 -1.83 4.31 -10.79 -0.05 -1.88 16 22 C -0.19 -4.08 8.09 30.62 0.25 -3.84 16 23 C -0.18 -3.69 10.03 30.62 0.31 -3.38 16 24 C -0.12 -2.69 6.86 31.12 0.21 -2.48 16 25 C -0.12 -1.53 7.81 31.12 0.24 -1.29 16 26 C -0.12 -1.81 5.69 31.12 0.18 -1.63 16 27 C 0.13 5.57 5.64 86.35 0.49 6.06 16 28 C 0.13 5.77 3.00 44.95 0.14 5.90 16 29 H 0.06 2.63 8.03 -2.38 -0.02 2.61 16 30 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 31 H 0.00 0.03 7.17 -2.39 -0.02 0.02 16 32 H 0.06 3.11 6.41 -2.39 -0.02 3.10 16 33 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 34 H 0.05 1.74 8.13 -2.38 -0.02 1.72 16 35 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 36 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.07 1.79 7.43 -2.39 -0.02 1.77 16 38 H 0.12 1.96 3.63 -2.39 -0.01 1.95 16 39 H 0.16 1.44 8.11 -2.39 -0.02 1.42 16 40 H 0.07 2.03 5.35 -2.39 -0.01 2.02 16 41 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 44 H 0.06 1.65 7.72 -2.39 -0.02 1.64 16 45 H 0.07 1.56 8.02 -2.39 -0.02 1.54 16 46 H 0.11 0.88 8.14 -2.39 -0.02 0.87 16 47 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.11 0.98 7.01 -2.39 -0.02 0.96 16 49 H 0.07 1.36 8.09 -2.38 -0.02 1.34 16 50 H 0.03 1.76 7.02 -2.39 -0.02 1.74 16 51 H 0.05 2.29 6.56 -2.39 -0.02 2.27 16 Total: -1.00 -76.66 376.89 3.42 -73.24 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.92 Total: 20.49 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 4.99 Total: 10.96 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -3.04 Total: -109.84 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -1.48 Total: -42.66 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -76.66 3.42 -73.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074304420.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.574 kcal (2) G-P(sol) polarization free energy of solvation -76.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds