Wall clock time and date at job start Tue Mar 31 2020 19:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00136 * 2 1 4 4 H 1.48500 * 109.47043 * 269.99818 * 3 2 1 5 5 H 1.48502 * 109.47121 * 29.99422 * 3 2 1 6 6 H 1.48500 * 109.47407 * 149.99831 * 3 2 1 7 7 C 1.38813 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00124 * 194.39839 * 7 2 1 9 9 N 1.36938 * 120.00273 * 14.40229 * 7 2 1 10 10 C 1.47358 * 121.30276 * 26.98637 * 9 7 2 11 11 C 1.53186 * 108.79601 * 129.74579 * 10 9 7 12 12 O 1.43144 * 109.74849 * 51.21144 * 11 10 9 13 13 C 1.42602 * 113.62830 * 298.31507 * 12 11 10 14 14 H 1.09000 * 109.34666 * 303.91433 * 13 12 11 15 15 C 1.52786 * 110.73176 * 183.37027 * 13 12 11 16 16 C 1.54776 * 108.23514 * 177.14501 * 15 13 12 17 17 N 1.46845 * 108.92381 * 54.42009 * 16 15 13 18 18 C 1.34778 * 120.40904 * 127.49059 * 17 16 15 19 19 O 1.21285 * 119.99816 * 179.72184 * 18 17 16 20 20 C 1.50701 * 120.00195 * 359.44193 * 18 17 16 21 21 C 1.53955 * 113.57896 * 279.52243 * 20 18 17 22 22 C 1.53075 * 86.72404 * 220.69128 * 21 20 18 23 23 C 1.52904 * 121.17489 * 150.58623 * 22 21 20 24 24 C 1.53954 * 86.78136 * 100.74770 * 23 22 21 25 25 C 1.52912 * 121.06466 * 259.12308 * 22 21 20 26 26 C 1.52912 * 88.06909 * 24.83102 * 22 21 20 27 27 C 1.47129 * 119.17553 * 307.20804 * 17 16 15 28 28 C 1.46871 * 121.30698 * 206.97439 * 9 7 2 29 29 H 1.09000 * 110.20852 * 112.04379 * 28 9 7 30 30 H 0.96998 * 119.99961 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.58082 * 9.94948 * 10 9 7 32 32 H 1.08995 * 109.58177 * 249.54341 * 10 9 7 33 33 H 1.08998 * 109.42824 * 291.12369 * 11 10 9 34 34 H 1.09003 * 109.38026 * 171.26805 * 11 10 9 35 35 H 1.08999 * 109.58528 * 297.50281 * 15 13 12 36 36 H 1.09001 * 109.58105 * 57.77071 * 15 13 12 37 37 H 1.09002 * 109.90189 * 294.44606 * 16 15 13 38 38 H 1.08996 * 109.43879 * 174.10929 * 16 15 13 39 39 H 1.09001 * 112.82117 * 50.60966 * 20 18 17 40 40 H 1.09001 * 113.65940 * 335.13250 * 21 20 18 41 41 H 1.08992 * 113.66318 * 106.19010 * 21 20 18 42 42 H 1.08995 * 113.66342 * 215.21876 * 23 22 21 43 43 H 1.09003 * 113.66355 * 346.28120 * 23 22 21 44 44 H 1.08995 * 113.58002 * 270.12815 * 24 23 22 45 45 H 1.09003 * 113.64924 * 139.34542 * 24 23 22 46 46 H 1.08996 * 113.66004 * 13.62988 * 25 22 21 47 47 H 1.09000 * 113.66237 * 144.59514 * 25 22 21 48 48 H 1.08998 * 113.66166 * 220.69505 * 26 22 21 49 49 H 1.09004 * 113.65782 * 89.63886 * 26 22 21 50 50 H 1.09008 * 109.72387 * 173.15155 * 27 17 16 51 51 H 1.08994 * 109.73058 * 293.78056 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0649 -1.2167 0.2331 9 7 1.3579 -2.3696 -0.2939 10 6 0.1598 -2.3818 -1.1517 11 6 0.3453 -3.4402 -2.2436 12 8 0.7240 -4.6864 -1.6498 13 6 1.9627 -4.6311 -0.9457 14 1 2.7443 -4.2760 -1.6173 15 6 2.3432 -6.0109 -0.4112 16 6 3.7252 -5.8997 0.2768 17 7 3.6688 -4.8379 1.2897 18 6 4.0546 -5.0834 2.5575 19 8 4.0097 -4.1996 3.3869 20 6 4.5358 -6.4576 2.9461 21 6 3.3954 -7.4571 3.2121 22 6 4.2279 -7.9573 4.3953 23 6 3.5617 -8.5493 5.6378 24 6 3.9167 -9.9325 5.0627 25 6 5.0551 -9.2392 4.2922 26 6 4.8995 -6.5841 4.4366 27 6 3.1918 -3.5012 0.9018 28 6 1.8251 -3.6586 0.2327 29 1 1.1079 -4.0536 0.9522 30 1 -0.4850 0.8400 -0.0004 31 1 0.0294 -1.4019 -1.6111 32 1 -0.7167 -2.6257 -0.5516 33 1 1.1240 -3.1162 -2.9340 34 1 -0.5910 -3.5672 -2.7870 35 1 1.5908 -6.3465 0.3025 36 1 2.4039 -6.7188 -1.2378 37 1 4.4891 -5.6577 -0.4621 38 1 3.9689 -6.8476 0.7564 39 1 5.3046 -6.8416 2.2756 40 1 2.4585 -6.9837 3.5056 41 1 3.2686 -8.1966 2.4216 42 1 4.0818 -8.3151 6.5666 43 1 2.4896 -8.3600 5.6916 44 1 3.1431 -10.3479 4.4170 45 1 4.2668 -10.6414 5.8131 46 1 5.1759 -9.6008 3.2711 47 1 5.9956 -9.1983 4.8416 48 1 5.9726 -6.6274 4.6230 49 1 4.3859 -5.8650 5.0748 50 1 3.0976 -2.8729 1.7876 51 1 3.8946 -3.0484 0.2026 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074316652.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:22 Heat of formation + Delta-G solvation = -7.519951 kcal Electronic energy + Delta-G solvation = -30708.605865 eV Core-core repulsion = 26803.085047 eV Total energy + Delta-G solvation = -3905.520818 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.06241 -39.62774 -38.35850 -36.00912 -34.86038 -34.59282 -31.74210 -31.34517 -29.85426 -27.37753 -26.17620 -25.96991 -25.83019 -24.48545 -23.92315 -22.29621 -21.74254 -20.90489 -19.67866 -18.53695 -18.14217 -17.28162 -16.80615 -15.85706 -15.77144 -15.50408 -15.31649 -15.14932 -14.94314 -14.41862 -14.29772 -13.83184 -13.71637 -13.14144 -13.03549 -12.97624 -12.92545 -12.79334 -12.52229 -12.39145 -12.24064 -12.05015 -11.81035 -11.36110 -11.19250 -11.09860 -10.98863 -10.92995 -10.82126 -10.60847 -10.44162 -10.28397 -10.25653 -10.20228 -10.13269 -9.98108 -9.61971 -9.36112 -8.98305 -8.54296 -8.31816 -6.74047 -5.83582 -3.29420 2.82792 3.19126 3.35709 3.42952 3.44403 4.16732 4.21824 4.26675 4.39708 4.43532 4.54316 4.55730 4.60197 4.83106 4.95512 5.17115 5.21355 5.23013 5.30412 5.38165 5.39602 5.43187 5.50381 5.51913 5.57972 5.65392 5.68829 5.70349 5.74511 5.76737 5.78244 5.86325 5.91690 5.95235 6.10560 6.12542 6.15108 6.22285 6.26155 6.33018 6.34730 6.47067 6.66412 6.73763 6.88419 7.14068 7.51399 7.66283 7.71708 7.89242 8.32387 8.44076 9.10220 9.73266 10.30624 11.24343 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015989 B = 0.003285 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.837520 B = 8522.248813 C = 9600.251547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.006 3.994 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.257 4.257 8 H 0.073 0.927 9 N -0.588 5.588 10 C 0.142 3.858 11 C 0.039 3.961 12 O -0.390 6.390 13 C 0.076 3.924 14 H 0.052 0.948 15 C -0.123 4.123 16 C 0.112 3.888 17 N -0.610 5.610 18 C 0.521 3.479 19 O -0.538 6.538 20 C -0.134 4.134 21 C -0.096 4.096 22 C -0.107 4.107 23 C -0.128 4.128 24 C -0.140 4.140 25 C -0.116 4.116 26 C -0.103 4.103 27 C 0.123 3.877 28 C 0.138 3.862 29 H 0.036 0.964 30 H 0.255 0.745 31 H 0.097 0.903 32 H 0.027 0.973 33 H 0.040 0.960 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.070 0.930 49 H 0.097 0.903 50 H 0.101 0.899 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.530 -19.482 3.033 21.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.193 4.193 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.386 4.386 8 H 0.090 0.910 9 N -0.313 5.313 10 C 0.016 3.984 11 C -0.039 4.039 12 O -0.309 6.309 13 C 0.017 3.983 14 H 0.070 0.930 15 C -0.162 4.162 16 C -0.011 4.011 17 N -0.344 5.344 18 C 0.309 3.691 19 O -0.414 6.414 20 C -0.155 4.155 21 C -0.133 4.133 22 C -0.107 4.107 23 C -0.165 4.165 24 C -0.177 4.177 25 C -0.154 4.154 26 C -0.140 4.140 27 C 0.001 3.999 28 C 0.030 3.970 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.127 0.873 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.101 0.899 48 H 0.089 0.911 49 H 0.115 0.885 50 H 0.119 0.881 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.288 -18.981 3.479 21.002 hybrid contribution 0.399 1.217 -0.215 1.299 sum 8.688 -17.764 3.264 20.042 Atomic orbital electron populations 1.70003 1.05265 1.25649 1.53748 1.25074 0.95373 0.98444 1.00451 0.86246 0.79202 0.83447 0.77663 1.21387 1.21623 1.20248 1.19164 0.92015 0.83906 1.43496 0.90988 1.44038 1.31588 1.01058 1.54570 1.21464 0.88573 0.97952 0.90371 1.23334 0.98781 0.85387 0.96389 1.87745 1.39145 1.33224 1.70809 1.22456 0.86601 0.95004 0.94266 0.93014 1.22098 0.96532 0.97041 1.00504 1.21954 0.97054 0.90977 0.91136 1.48278 1.64493 1.12518 1.09085 1.20465 0.77301 0.89813 0.81562 1.90698 1.54416 1.46859 1.49463 1.22718 1.00203 0.93259 0.99295 1.22644 0.96782 0.96851 0.97054 1.22456 0.97833 0.94033 0.96394 1.22742 1.00806 0.95779 0.97159 1.22821 0.98655 0.96502 0.99753 1.22657 0.97322 0.94624 1.00747 1.22694 1.00875 0.96137 0.94315 1.21754 0.94908 0.81944 1.01307 1.21272 0.94041 0.88570 0.93068 0.94686 0.93486 0.88467 0.95476 0.94148 0.90108 0.90761 0.90424 0.91280 0.89549 0.87259 0.89192 0.90552 0.89957 0.91321 0.90246 0.91669 0.91353 0.89858 0.91126 0.88479 0.88090 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.01 11.06 55.49 0.61 -25.40 16 2 C 0.01 0.15 5.01 -17.43 -0.09 0.07 16 3 Si 0.90 21.73 29.58 -169.99 -5.03 16.70 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.26 -6.91 8.89 -15.06 -0.13 -7.05 16 8 H 0.07 1.90 6.26 -52.48 -0.33 1.57 16 9 N -0.59 -14.70 3.04 -164.36 -0.50 -15.20 16 10 C 0.14 3.41 5.42 -3.48 -0.02 3.39 16 11 C 0.04 0.77 6.96 37.25 0.26 1.03 16 12 O -0.39 -7.67 10.47 -35.23 -0.37 -8.04 16 13 C 0.08 1.38 2.47 -26.63 -0.07 1.31 16 14 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 15 C -0.12 -1.66 5.89 -25.91 -0.15 -1.81 16 16 C 0.11 1.32 6.34 -2.92 -0.02 1.31 16 17 N -0.61 -9.60 2.97 -171.81 -0.51 -10.11 16 18 C 0.52 8.31 7.22 -10.98 -0.08 8.24 16 19 O -0.54 -10.95 15.30 5.55 0.08 -10.86 16 20 C -0.13 -1.49 2.72 -90.79 -0.25 -1.74 16 21 C -0.10 -0.94 6.89 -26.19 -0.18 -1.12 16 22 C -0.11 -0.95 1.11 -154.63 -0.17 -1.12 16 23 C -0.13 -1.07 7.84 -26.28 -0.21 -1.27 16 24 C -0.14 -0.99 8.08 -25.75 -0.21 -1.20 16 25 C -0.12 -0.84 7.84 -26.28 -0.21 -1.04 16 26 C -0.10 -1.12 7.16 -26.28 -0.19 -1.31 16 27 C 0.12 2.43 4.48 -3.71 -0.02 2.41 16 28 C 0.14 2.96 3.02 -67.53 -0.20 2.75 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.10 2.54 6.16 -51.93 -0.32 2.22 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.77 5.31 -51.93 -0.28 0.49 16 39 H 0.11 0.99 7.56 -51.93 -0.39 0.60 16 40 H 0.09 1.04 8.09 -51.93 -0.42 0.62 16 41 H 0.08 0.62 7.88 -51.93 -0.41 0.21 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.10 1.28 7.44 -51.93 -0.39 0.89 16 50 H 0.10 2.34 6.80 -51.92 -0.35 1.98 16 51 H 0.07 1.40 7.38 -51.93 -0.38 1.02 16 LS Contribution 384.40 15.07 5.79 5.79 Total: -1.00 -31.66 384.40 -10.59 -42.24 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -8.74 Total: 2.04 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -1.93 Total: 2.84 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.40 Total: -50.72 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.28 Total: -18.90 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.66 -10.59 -42.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074316652.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.721 kcal (2) G-P(sol) polarization free energy of solvation -31.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds