Wall clock time and date at job start Tue Mar 31 2020 19:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00136 * 2 1 4 4 H 1.48500 * 109.47043 * 269.99818 * 3 2 1 5 5 H 1.48502 * 109.47121 * 29.99422 * 3 2 1 6 6 H 1.48500 * 109.47407 * 149.99831 * 3 2 1 7 7 C 1.38813 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00124 * 194.39839 * 7 2 1 9 9 N 1.36938 * 120.00273 * 14.40229 * 7 2 1 10 10 C 1.47358 * 121.30276 * 26.98637 * 9 7 2 11 11 C 1.53186 * 108.79601 * 129.74579 * 10 9 7 12 12 O 1.43144 * 109.74849 * 51.21144 * 11 10 9 13 13 C 1.42602 * 113.62830 * 298.31507 * 12 11 10 14 14 H 1.09000 * 109.34666 * 303.91433 * 13 12 11 15 15 C 1.52786 * 110.73176 * 183.37027 * 13 12 11 16 16 C 1.54776 * 108.23514 * 177.14501 * 15 13 12 17 17 N 1.46845 * 108.92381 * 54.42009 * 16 15 13 18 18 C 1.34778 * 120.40904 * 127.49059 * 17 16 15 19 19 O 1.21285 * 119.99816 * 179.72184 * 18 17 16 20 20 C 1.50701 * 120.00195 * 359.44193 * 18 17 16 21 21 C 1.53955 * 113.57896 * 279.52243 * 20 18 17 22 22 C 1.53075 * 86.72404 * 220.69128 * 21 20 18 23 23 C 1.52904 * 121.17489 * 150.58623 * 22 21 20 24 24 C 1.53954 * 86.78136 * 100.74770 * 23 22 21 25 25 C 1.52912 * 121.06466 * 259.12308 * 22 21 20 26 26 C 1.52912 * 88.06909 * 24.83102 * 22 21 20 27 27 C 1.47129 * 119.17553 * 307.20804 * 17 16 15 28 28 C 1.46871 * 121.30698 * 206.97439 * 9 7 2 29 29 H 1.09000 * 110.20852 * 112.04379 * 28 9 7 30 30 H 0.96998 * 119.99961 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.58082 * 9.94948 * 10 9 7 32 32 H 1.08995 * 109.58177 * 249.54341 * 10 9 7 33 33 H 1.08998 * 109.42824 * 291.12369 * 11 10 9 34 34 H 1.09003 * 109.38026 * 171.26805 * 11 10 9 35 35 H 1.08999 * 109.58528 * 297.50281 * 15 13 12 36 36 H 1.09001 * 109.58105 * 57.77071 * 15 13 12 37 37 H 1.09002 * 109.90189 * 294.44606 * 16 15 13 38 38 H 1.08996 * 109.43879 * 174.10929 * 16 15 13 39 39 H 1.09001 * 112.82117 * 50.60966 * 20 18 17 40 40 H 1.09001 * 113.65940 * 335.13250 * 21 20 18 41 41 H 1.08992 * 113.66318 * 106.19010 * 21 20 18 42 42 H 1.08995 * 113.66342 * 215.21876 * 23 22 21 43 43 H 1.09003 * 113.66355 * 346.28120 * 23 22 21 44 44 H 1.08995 * 113.58002 * 270.12815 * 24 23 22 45 45 H 1.09003 * 113.64924 * 139.34542 * 24 23 22 46 46 H 1.08996 * 113.66004 * 13.62988 * 25 22 21 47 47 H 1.09000 * 113.66237 * 144.59514 * 25 22 21 48 48 H 1.08998 * 113.66166 * 220.69505 * 26 22 21 49 49 H 1.09004 * 113.65782 * 89.63886 * 26 22 21 50 50 H 1.09008 * 109.72387 * 173.15155 * 27 17 16 51 51 H 1.08994 * 109.73058 * 293.78056 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0649 -1.2167 0.2331 9 7 1.3579 -2.3696 -0.2939 10 6 0.1598 -2.3818 -1.1517 11 6 0.3453 -3.4402 -2.2436 12 8 0.7240 -4.6864 -1.6498 13 6 1.9627 -4.6311 -0.9457 14 1 2.7443 -4.2760 -1.6173 15 6 2.3432 -6.0109 -0.4112 16 6 3.7252 -5.8997 0.2768 17 7 3.6688 -4.8379 1.2897 18 6 4.0546 -5.0834 2.5575 19 8 4.0097 -4.1996 3.3869 20 6 4.5358 -6.4576 2.9461 21 6 3.3954 -7.4571 3.2121 22 6 4.2279 -7.9573 4.3953 23 6 3.5617 -8.5493 5.6378 24 6 3.9167 -9.9325 5.0627 25 6 5.0551 -9.2392 4.2922 26 6 4.8995 -6.5841 4.4366 27 6 3.1918 -3.5012 0.9018 28 6 1.8251 -3.6586 0.2327 29 1 1.1079 -4.0536 0.9522 30 1 -0.4850 0.8400 -0.0004 31 1 0.0294 -1.4019 -1.6111 32 1 -0.7167 -2.6257 -0.5516 33 1 1.1240 -3.1162 -2.9340 34 1 -0.5910 -3.5672 -2.7870 35 1 1.5908 -6.3465 0.3025 36 1 2.4039 -6.7188 -1.2378 37 1 4.4891 -5.6577 -0.4621 38 1 3.9689 -6.8476 0.7564 39 1 5.3046 -6.8416 2.2756 40 1 2.4585 -6.9837 3.5056 41 1 3.2686 -8.1966 2.4216 42 1 4.0818 -8.3151 6.5666 43 1 2.4896 -8.3600 5.6916 44 1 3.1431 -10.3479 4.4170 45 1 4.2668 -10.6414 5.8131 46 1 5.1759 -9.6008 3.2711 47 1 5.9956 -9.1983 4.8416 48 1 5.9726 -6.6274 4.6230 49 1 4.3859 -5.8650 5.0748 50 1 3.0976 -2.8729 1.7876 51 1 3.8946 -3.0484 0.2026 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074316652.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:21 Heat of formation + Delta-G solvation = -26.809448 kcal Electronic energy + Delta-G solvation = -30709.442321 eV Core-core repulsion = 26803.085047 eV Total energy + Delta-G solvation = -3906.357273 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.04546 -40.90370 -39.71568 -37.40877 -36.56839 -35.57117 -33.47300 -32.94343 -31.40923 -29.12149 -27.48721 -26.74589 -26.56405 -25.75834 -25.44046 -23.70528 -23.00276 -22.13053 -21.38196 -19.70905 -18.88435 -18.70634 -18.44050 -17.27163 -17.09296 -16.76041 -16.63465 -16.36212 -16.05306 -16.00947 -15.65483 -15.36043 -15.23857 -14.72029 -14.67384 -14.05867 -13.99846 -13.94490 -13.67902 -13.37809 -13.28378 -13.03592 -12.95275 -12.87882 -12.83648 -12.68764 -12.41657 -12.32381 -12.08047 -11.93851 -11.87924 -11.75840 -11.74357 -11.28435 -11.17817 -10.95949 -10.93048 -10.77463 -10.55985 -10.49529 -9.69536 -8.78012 -7.94396 -5.43653 1.41792 1.43005 1.51838 1.58497 1.92299 2.43862 2.82344 3.20348 3.40398 3.41433 3.46812 3.59048 3.70651 3.74577 3.87146 3.94216 4.01790 4.04768 4.13643 4.16582 4.27282 4.39454 4.41938 4.48248 4.52804 4.57298 4.62776 4.67356 4.75825 4.81599 4.82867 4.85033 4.91728 4.97110 4.98817 5.03571 5.07220 5.10914 5.11908 5.14746 5.18925 5.30143 5.37085 5.44085 5.52437 5.57396 5.60125 5.66651 6.22888 6.32255 6.43673 7.01575 7.17533 7.69073 8.23867 9.11523 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015989 B = 0.003285 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.837520 B = 8522.248813 C = 9600.251547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.049 4.049 3 Si 0.968 3.032 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.273 1.273 7 C -0.261 4.261 8 H 0.073 0.927 9 N -0.606 5.606 10 C 0.146 3.854 11 C 0.052 3.948 12 O -0.392 6.392 13 C 0.080 3.920 14 H 0.057 0.943 15 C -0.115 4.115 16 C 0.110 3.890 17 N -0.609 5.609 18 C 0.512 3.488 19 O -0.595 6.595 20 C -0.123 4.123 21 C -0.092 4.092 22 C -0.101 4.101 23 C -0.138 4.138 24 C -0.134 4.134 25 C -0.106 4.106 26 C -0.111 4.111 27 C 0.138 3.862 28 C 0.135 3.865 29 H 0.001 0.999 30 H 0.251 0.749 31 H 0.072 0.928 32 H -0.006 1.006 33 H 0.050 0.950 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.129 0.871 39 H 0.148 0.852 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.083 0.917 49 H 0.061 0.939 50 H 0.054 0.946 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.911 -23.151 1.373 25.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.796 3.204 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.197 1.197 7 C -0.391 4.391 8 H 0.091 0.909 9 N -0.331 5.331 10 C 0.020 3.980 11 C -0.026 4.026 12 O -0.311 6.311 13 C 0.021 3.979 14 H 0.075 0.925 15 C -0.153 4.153 16 C -0.011 4.011 17 N -0.342 5.342 18 C 0.303 3.697 19 O -0.475 6.475 20 C -0.144 4.144 21 C -0.130 4.130 22 C -0.102 4.102 23 C -0.176 4.176 24 C -0.171 4.171 25 C -0.143 4.143 26 C -0.149 4.149 27 C 0.014 3.986 28 C 0.028 3.972 29 H 0.019 0.981 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.012 0.988 33 H 0.068 0.932 34 H 0.127 0.873 35 H 0.086 0.914 36 H 0.133 0.867 37 H 0.111 0.889 38 H 0.147 0.853 39 H 0.166 0.834 40 H 0.081 0.919 41 H 0.126 0.874 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.103 0.897 45 H 0.093 0.907 46 H 0.105 0.895 47 H 0.109 0.891 48 H 0.101 0.899 49 H 0.080 0.920 50 H 0.073 0.927 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.688 -22.712 1.792 25.165 hybrid contribution -0.385 2.370 0.407 2.435 sum 10.303 -20.342 2.199 22.908 Atomic orbital electron populations 1.70164 1.06627 1.25980 1.55410 1.25845 0.96157 1.01547 1.00910 0.85254 0.77893 0.79382 0.77879 1.20321 1.22197 1.19750 1.19454 0.92298 0.84923 1.42379 0.90896 1.44343 1.31661 1.01978 1.55158 1.21329 0.87286 0.98350 0.91010 1.23167 1.00616 0.84096 0.94681 1.87756 1.40013 1.32596 1.70727 1.22554 0.86142 0.96843 0.92364 0.92491 1.22143 0.97133 0.94519 1.01538 1.22346 0.96669 0.91304 0.90797 1.48379 1.63799 1.11746 1.10234 1.21495 0.76185 0.91259 0.80789 1.90675 1.56696 1.49117 1.51046 1.22873 1.01586 0.90058 0.99871 1.22625 0.95208 0.96727 0.98425 1.22451 0.97820 0.93642 0.96237 1.22824 1.00142 0.97348 0.97240 1.22810 0.98793 0.95591 0.99912 1.22662 0.97196 0.92479 1.01930 1.22685 1.01490 0.96912 0.93769 1.21239 0.94277 0.84158 0.98918 1.21421 0.93693 0.87839 0.94234 0.98106 0.93941 0.90958 0.98755 0.93163 0.87309 0.91431 0.86688 0.88939 0.85348 0.83413 0.91872 0.87389 0.89999 0.92470 0.89703 0.90738 0.89546 0.89112 0.89854 0.91998 0.92716 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.52 11.06 21.65 0.24 -56.28 16 2 C -0.05 -2.81 5.01 84.86 0.43 -2.38 16 3 Si 0.97 46.07 29.58 68.60 2.03 48.10 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.26 -14.62 8.89 84.03 0.75 -13.87 16 8 H 0.07 3.99 6.26 -2.91 -0.02 3.97 16 9 N -0.61 -31.59 3.04 -673.91 -2.05 -33.64 16 10 C 0.15 7.28 5.42 86.28 0.47 7.75 16 11 C 0.05 2.01 6.96 72.04 0.50 2.51 16 12 O -0.39 -14.74 10.47 -148.98 -1.56 -16.30 16 13 C 0.08 2.77 2.47 30.66 0.08 2.84 16 14 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 15 C -0.11 -2.68 5.89 31.13 0.18 -2.50 16 16 C 0.11 2.14 6.34 86.92 0.55 2.69 16 17 N -0.61 -18.66 2.97 -815.86 -2.43 -21.08 16 18 C 0.51 16.34 7.22 87.66 0.63 16.97 16 19 O -0.59 -25.70 15.30 -3.04 -0.05 -25.75 16 20 C -0.12 -2.45 2.72 -10.90 -0.03 -2.48 16 21 C -0.09 -1.57 6.89 30.94 0.21 -1.36 16 22 C -0.10 -1.56 1.11 -52.26 -0.06 -1.62 16 23 C -0.14 -2.13 7.84 30.88 0.24 -1.89 16 24 C -0.13 -1.46 8.08 31.23 0.25 -1.21 16 25 C -0.11 -1.07 7.84 30.89 0.24 -0.83 16 26 C -0.11 -2.31 7.16 30.88 0.22 -2.09 16 27 C 0.14 5.64 4.48 86.25 0.39 6.03 16 28 C 0.14 5.97 3.02 45.05 0.14 6.10 16 29 H 0.00 0.06 8.14 -2.39 -0.02 0.05 16 30 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 31 H 0.07 3.95 6.16 -2.39 -0.01 3.94 16 32 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.13 1.49 5.31 -2.39 -0.01 1.47 16 39 H 0.15 1.86 7.56 -2.39 -0.02 1.85 16 40 H 0.06 1.43 8.09 -2.39 -0.02 1.42 16 41 H 0.11 1.18 7.88 -2.39 -0.02 1.16 16 42 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.06 1.73 7.44 -2.39 -0.02 1.72 16 50 H 0.05 2.73 6.80 -2.38 -0.02 2.72 16 51 H 0.07 2.84 7.38 -2.39 -0.02 2.83 16 Total: -1.00 -76.19 384.40 2.28 -73.91 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.91 Total: 16.36 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 5.19 Total: 14.69 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -4.24 Total: -111.01 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -1.61 Total: -42.06 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -76.19 2.28 -73.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074316652.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.102 kcal (2) G-P(sol) polarization free energy of solvation -76.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds