Wall clock time and date at job start Tue Mar 31 2020 19:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00169 * 2 1 4 4 H 1.48498 * 109.47021 * 240.00114 * 3 2 1 5 5 H 1.48498 * 109.47028 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47018 * 120.00217 * 3 2 1 7 7 C 1.38817 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99799 * 196.89678 * 7 2 1 9 9 N 1.36938 * 119.99967 * 16.89443 * 7 2 1 10 10 C 1.47168 * 121.22405 * 26.10601 * 9 7 2 11 11 C 1.53229 * 108.70370 * 129.08236 * 10 9 7 12 12 O 1.43077 * 109.44833 * 51.57131 * 11 10 9 13 13 C 1.42694 * 113.86901 * 298.35839 * 12 11 10 14 14 H 1.08998 * 108.92740 * 305.06299 * 13 12 11 15 15 C 1.52513 * 110.62356 * 185.35173 * 13 12 11 16 16 C 1.53159 * 109.79636 * 298.71842 * 15 13 12 17 17 N 1.46986 * 108.61773 * 305.37006 * 16 15 13 18 18 C 1.34771 * 120.71914 * 234.65241 * 17 16 15 19 19 O 1.21282 * 120.00165 * 180.02562 * 18 17 16 20 20 C 1.50706 * 120.00196 * 359.97438 * 18 17 16 21 21 C 1.53949 * 113.58200 * 279.24805 * 20 18 17 22 22 C 1.53068 * 86.72437 * 220.68675 * 21 20 18 23 23 C 1.52908 * 121.17600 * 150.58973 * 22 21 20 24 24 C 1.53947 * 86.78357 * 100.74960 * 23 22 21 25 25 C 1.52912 * 121.06942 * 259.12562 * 22 21 20 26 26 C 1.52912 * 88.07128 * 24.83501 * 22 21 20 27 27 C 1.47205 * 118.28774 * 54.43558 * 17 16 15 28 28 C 1.47593 * 121.22526 * 206.12708 * 9 7 2 29 29 H 1.09001 * 110.31575 * 352.28349 * 28 9 7 30 30 H 0.97002 * 119.99576 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.60214 * 9.31776 * 10 9 7 32 32 H 1.08998 * 109.72940 * 248.92423 * 10 9 7 33 33 H 1.09002 * 109.47592 * 291.58260 * 11 10 9 34 34 H 1.08999 * 109.48110 * 171.56636 * 11 10 9 35 35 H 1.09001 * 109.41647 * 178.61864 * 15 13 12 36 36 H 1.09002 * 109.41441 * 58.81859 * 15 13 12 37 37 H 1.09009 * 109.63714 * 65.15874 * 16 15 13 38 38 H 1.08991 * 109.64144 * 185.57400 * 16 15 13 39 39 H 1.09004 * 112.81574 * 50.33773 * 20 18 17 40 40 H 1.09001 * 113.66200 * 335.13593 * 21 20 18 41 41 H 1.08998 * 113.66118 * 106.18768 * 21 20 18 42 42 H 1.08997 * 113.66556 * 215.22652 * 23 22 21 43 43 H 1.09006 * 113.65822 * 346.27807 * 23 22 21 44 44 H 1.09003 * 113.58268 * 270.13409 * 24 23 22 45 45 H 1.09000 * 113.65281 * 139.35049 * 24 23 22 46 46 H 1.08999 * 113.66057 * 13.62707 * 25 22 21 47 47 H 1.08989 * 113.66745 * 144.68666 * 25 22 21 48 48 H 1.08995 * 113.66130 * 220.69714 * 26 22 21 49 49 H 1.08999 * 113.74853 * 89.64541 * 26 22 21 50 50 H 1.08995 * 109.44489 * 185.90459 * 27 17 16 51 51 H 1.09001 * 109.53468 * 65.81900 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0553 -1.2225 0.2713 9 7 1.3699 -2.3624 -0.3457 10 6 0.1949 -2.3507 -1.2318 11 6 0.4198 -3.3635 -2.3594 12 8 0.7875 -4.6272 -1.7983 13 6 2.0030 -4.5956 -1.0514 14 1 2.7955 -4.1940 -1.6827 15 6 2.3929 -5.9994 -0.6003 16 6 1.3026 -6.5735 0.3093 17 7 1.0687 -5.6320 1.4135 18 6 1.1518 -6.0399 2.6953 19 8 0.9559 -5.2521 3.5964 20 6 1.4869 -7.4754 3.0091 21 6 0.2815 -8.4269 2.9017 22 6 0.8152 -9.1041 4.1664 23 6 -0.1285 -9.7881 5.1563 24 6 0.2955 -11.1184 4.5079 25 6 1.5991 -10.4147 4.0890 26 6 1.5091 -7.7873 4.5165 27 6 0.7471 -4.2342 1.0822 28 6 1.8324 -3.6705 0.1576 29 1 2.7795 -3.5595 0.6855 30 1 -0.4849 0.8401 0.0004 31 1 0.0662 -1.3546 -1.6554 32 1 -0.6954 -2.6251 -0.6660 33 1 1.2179 -3.0096 -3.0120 34 1 -0.4984 -3.4753 -2.9360 35 1 3.3349 -5.9557 -0.0536 36 1 2.5112 -6.6408 -1.4736 37 1 0.3826 -6.7060 -0.2603 38 1 1.6273 -7.5340 0.7092 39 1 2.3705 -7.8290 2.4776 40 1 -0.6798 -7.9328 3.0423 41 1 0.3058 -9.0658 2.0189 42 1 0.1823 -9.6898 6.1964 43 1 -1.1788 -9.5411 5.0014 44 1 -0.3312 -11.4124 3.6659 45 1 0.4466 -11.9257 5.2245 46 1 1.9289 -10.6683 3.0815 47 1 2.3955 -10.4925 4.8290 48 1 2.5126 -7.9159 4.9219 49 1 0.8946 -7.1121 5.1120 50 1 0.7063 -3.6445 1.9979 51 1 -0.2186 -4.1920 0.5784 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074316653.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:27 Heat of formation + Delta-G solvation = -7.483931 kcal Electronic energy + Delta-G solvation = -30691.114577 eV Core-core repulsion = 26785.595321 eV Total energy + Delta-G solvation = -3905.519256 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.00299 -39.66331 -38.30817 -35.69515 -34.78147 -34.56976 -31.70674 -31.48168 -29.53834 -27.62144 -26.17670 -25.95393 -25.78425 -24.31925 -23.75028 -22.78082 -21.75402 -21.24280 -19.03190 -18.25114 -18.06734 -17.18379 -16.86667 -15.79813 -15.76666 -15.44209 -15.37394 -15.12653 -14.89525 -14.51035 -14.26820 -13.90217 -13.66206 -13.21329 -13.14121 -12.94678 -12.79054 -12.52506 -12.38195 -12.33817 -12.17441 -12.02901 -11.89437 -11.34508 -11.18537 -11.07687 -11.04454 -10.92194 -10.74335 -10.59135 -10.42715 -10.27919 -10.26386 -10.16538 -10.10131 -9.97399 -9.62590 -9.27228 -8.99310 -8.58571 -8.18890 -6.76262 -5.86226 -3.29864 2.93280 3.31919 3.36459 3.41067 3.42762 4.18553 4.25927 4.32707 4.41256 4.42221 4.57247 4.59273 4.62222 4.91082 5.05067 5.16033 5.22462 5.24901 5.29835 5.37717 5.44130 5.47065 5.51253 5.56786 5.65785 5.66710 5.70632 5.75820 5.77550 5.78909 5.82685 5.89913 6.02458 6.05477 6.09522 6.13498 6.16723 6.24944 6.30004 6.34320 6.38904 6.43988 6.70800 6.77190 6.99123 7.08701 7.48008 7.70342 7.83656 7.88685 8.30086 8.55875 9.08589 9.70252 10.27626 11.21380 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019424 B = 0.003001 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.200827 B = 9327.127532 C =10118.091694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.006 3.994 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.256 4.256 8 H 0.068 0.932 9 N -0.584 5.584 10 C 0.137 3.863 11 C 0.040 3.960 12 O -0.387 6.387 13 C 0.081 3.919 14 H 0.051 0.949 15 C -0.123 4.123 16 C 0.114 3.886 17 N -0.605 5.605 18 C 0.518 3.482 19 O -0.544 6.544 20 C -0.133 4.133 21 C -0.095 4.095 22 C -0.107 4.107 23 C -0.127 4.127 24 C -0.140 4.140 25 C -0.116 4.116 26 C -0.103 4.103 27 C 0.106 3.894 28 C 0.134 3.866 29 H 0.074 0.926 30 H 0.256 0.744 31 H 0.096 0.904 32 H 0.028 0.972 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.070 0.930 49 H 0.096 0.904 50 H 0.087 0.913 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.065 -21.203 2.124 21.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.194 4.194 3 Si 0.736 3.264 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.385 4.385 8 H 0.086 0.914 9 N -0.307 5.307 10 C 0.012 3.988 11 C -0.038 4.038 12 O -0.306 6.306 13 C 0.021 3.979 14 H 0.069 0.931 15 C -0.162 4.162 16 C -0.009 4.009 17 N -0.338 5.338 18 C 0.306 3.694 19 O -0.421 6.421 20 C -0.154 4.154 21 C -0.133 4.133 22 C -0.107 4.107 23 C -0.165 4.165 24 C -0.177 4.177 25 C -0.153 4.153 26 C -0.141 4.141 27 C -0.017 4.017 28 C 0.026 3.974 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.127 0.873 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.102 0.898 48 H 0.088 0.912 49 H 0.115 0.885 50 H 0.105 0.895 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.727 -20.725 2.575 20.956 hybrid contribution 0.539 1.269 -0.129 1.384 sum 2.266 -19.457 2.446 19.740 Atomic orbital electron populations 1.70014 1.05253 1.25874 1.53258 1.25057 0.95348 0.98496 1.00467 0.86308 0.78893 0.83035 0.78177 1.20968 1.21533 1.20765 1.19130 0.92567 0.84241 1.42578 0.91385 1.44302 1.33588 1.00676 1.52105 1.21459 0.89027 0.98622 0.89707 1.23328 0.98841 0.84920 0.96737 1.87713 1.41354 1.31950 1.69633 1.22213 0.87145 0.94657 0.93864 0.93099 1.21804 0.98629 0.96251 0.99513 1.21611 0.99256 0.91813 0.88214 1.48391 1.68989 1.11370 1.05082 1.20427 0.77023 0.89636 0.82317 1.90685 1.50512 1.55518 1.45418 1.22704 1.00455 0.92623 0.99599 1.22619 0.97294 0.96371 0.97000 1.22459 0.97842 0.93572 0.96871 1.22740 0.99340 0.95780 0.98609 1.22821 0.97612 0.96718 1.00595 1.22655 0.96636 0.94305 1.01754 1.22688 1.01246 0.95775 0.94344 1.22358 0.99638 0.79109 1.00596 1.21606 0.96556 0.87062 0.92202 0.90823 0.93381 0.88634 0.95357 0.94121 0.90148 0.90538 0.90484 0.90780 0.90405 0.87289 0.89376 0.90658 0.89963 0.91403 0.90288 0.91674 0.91332 0.89845 0.91158 0.88543 0.89467 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.75 11.14 55.49 0.62 -25.14 16 2 C 0.01 0.15 4.96 -17.43 -0.09 0.07 16 3 Si 0.91 21.60 29.59 -169.99 -5.03 16.57 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.26 -6.94 9.69 -15.06 -0.15 -7.09 16 8 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 9 N -0.58 -14.36 2.71 -163.87 -0.44 -14.81 16 10 C 0.14 3.20 4.93 -3.56 -0.02 3.19 16 11 C 0.04 0.75 6.97 37.28 0.26 1.01 16 12 O -0.39 -7.14 9.59 -35.23 -0.34 -7.48 16 13 C 0.08 1.42 2.72 -26.88 -0.07 1.34 16 14 H 0.05 0.93 8.12 -51.93 -0.42 0.50 16 15 C -0.12 -1.62 5.82 -26.90 -0.16 -1.78 16 16 C 0.11 1.47 6.12 -3.70 -0.02 1.45 16 17 N -0.61 -10.01 2.98 -172.44 -0.51 -10.53 16 18 C 0.52 8.63 7.23 -10.98 -0.08 8.55 16 19 O -0.54 -11.47 15.34 5.56 0.09 -11.39 16 20 C -0.13 -1.55 2.74 -90.79 -0.25 -1.80 16 21 C -0.10 -0.95 7.12 -26.20 -0.19 -1.14 16 22 C -0.11 -0.98 1.11 -154.63 -0.17 -1.15 16 23 C -0.13 -1.06 7.84 -26.28 -0.21 -1.27 16 24 C -0.14 -0.99 8.08 -25.75 -0.21 -1.20 16 25 C -0.12 -0.86 7.84 -26.28 -0.21 -1.07 16 26 C -0.10 -1.16 7.17 -26.28 -0.19 -1.35 16 27 C 0.11 2.20 5.64 -3.49 -0.02 2.18 16 28 C 0.13 2.81 3.03 -67.07 -0.20 2.60 16 29 H 0.07 1.59 7.99 -51.93 -0.42 1.18 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.10 2.46 6.12 -51.93 -0.32 2.14 16 32 H 0.03 0.71 7.18 -51.93 -0.37 0.33 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.99 7.94 -51.92 -0.41 0.58 16 38 H 0.08 0.76 5.66 -51.93 -0.29 0.47 16 39 H 0.11 1.08 7.31 -51.93 -0.38 0.70 16 40 H 0.09 1.00 8.09 -51.93 -0.42 0.58 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.58 8.14 -51.94 -0.42 0.16 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.10 1.30 7.44 -51.93 -0.39 0.92 16 50 H 0.09 2.12 7.03 -51.93 -0.36 1.75 16 51 H 0.07 1.49 6.56 -51.93 -0.34 1.15 16 LS Contribution 385.04 15.07 5.80 5.80 Total: -1.00 -31.05 385.04 -10.53 -41.58 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -8.75 Total: 2.83 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -1.96 Total: 2.55 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.34 Total: -50.47 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.25 Total: -18.87 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.05 -10.53 -41.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074316653.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.096 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds