Wall clock time and date at job start Tue Mar 31 2020 19:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00169 * 2 1 4 4 H 1.48498 * 109.47021 * 240.00114 * 3 2 1 5 5 H 1.48498 * 109.47028 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47018 * 120.00217 * 3 2 1 7 7 C 1.38817 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99799 * 196.89678 * 7 2 1 9 9 N 1.36938 * 119.99967 * 16.89443 * 7 2 1 10 10 C 1.47168 * 121.22405 * 26.10601 * 9 7 2 11 11 C 1.53229 * 108.70370 * 129.08236 * 10 9 7 12 12 O 1.43077 * 109.44833 * 51.57131 * 11 10 9 13 13 C 1.42694 * 113.86901 * 298.35839 * 12 11 10 14 14 H 1.08998 * 108.92740 * 305.06299 * 13 12 11 15 15 C 1.52513 * 110.62356 * 185.35173 * 13 12 11 16 16 C 1.53159 * 109.79636 * 298.71842 * 15 13 12 17 17 N 1.46986 * 108.61773 * 305.37006 * 16 15 13 18 18 C 1.34771 * 120.71914 * 234.65241 * 17 16 15 19 19 O 1.21282 * 120.00165 * 180.02562 * 18 17 16 20 20 C 1.50706 * 120.00196 * 359.97438 * 18 17 16 21 21 C 1.53949 * 113.58200 * 279.24805 * 20 18 17 22 22 C 1.53068 * 86.72437 * 220.68675 * 21 20 18 23 23 C 1.52908 * 121.17600 * 150.58973 * 22 21 20 24 24 C 1.53947 * 86.78357 * 100.74960 * 23 22 21 25 25 C 1.52912 * 121.06942 * 259.12562 * 22 21 20 26 26 C 1.52912 * 88.07128 * 24.83501 * 22 21 20 27 27 C 1.47205 * 118.28774 * 54.43558 * 17 16 15 28 28 C 1.47593 * 121.22526 * 206.12708 * 9 7 2 29 29 H 1.09001 * 110.31575 * 352.28349 * 28 9 7 30 30 H 0.97002 * 119.99576 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.60214 * 9.31776 * 10 9 7 32 32 H 1.08998 * 109.72940 * 248.92423 * 10 9 7 33 33 H 1.09002 * 109.47592 * 291.58260 * 11 10 9 34 34 H 1.08999 * 109.48110 * 171.56636 * 11 10 9 35 35 H 1.09001 * 109.41647 * 178.61864 * 15 13 12 36 36 H 1.09002 * 109.41441 * 58.81859 * 15 13 12 37 37 H 1.09009 * 109.63714 * 65.15874 * 16 15 13 38 38 H 1.08991 * 109.64144 * 185.57400 * 16 15 13 39 39 H 1.09004 * 112.81574 * 50.33773 * 20 18 17 40 40 H 1.09001 * 113.66200 * 335.13593 * 21 20 18 41 41 H 1.08998 * 113.66118 * 106.18768 * 21 20 18 42 42 H 1.08997 * 113.66556 * 215.22652 * 23 22 21 43 43 H 1.09006 * 113.65822 * 346.27807 * 23 22 21 44 44 H 1.09003 * 113.58268 * 270.13409 * 24 23 22 45 45 H 1.09000 * 113.65281 * 139.35049 * 24 23 22 46 46 H 1.08999 * 113.66057 * 13.62707 * 25 22 21 47 47 H 1.08989 * 113.66745 * 144.68666 * 25 22 21 48 48 H 1.08995 * 113.66130 * 220.69714 * 26 22 21 49 49 H 1.08999 * 113.74853 * 89.64541 * 26 22 21 50 50 H 1.08995 * 109.44489 * 185.90459 * 27 17 16 51 51 H 1.09001 * 109.53468 * 65.81900 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0553 -1.2225 0.2713 9 7 1.3699 -2.3624 -0.3457 10 6 0.1949 -2.3507 -1.2318 11 6 0.4198 -3.3635 -2.3594 12 8 0.7875 -4.6272 -1.7983 13 6 2.0030 -4.5956 -1.0514 14 1 2.7955 -4.1940 -1.6827 15 6 2.3929 -5.9994 -0.6003 16 6 1.3026 -6.5735 0.3093 17 7 1.0687 -5.6320 1.4135 18 6 1.1518 -6.0399 2.6953 19 8 0.9559 -5.2521 3.5964 20 6 1.4869 -7.4754 3.0091 21 6 0.2815 -8.4269 2.9017 22 6 0.8152 -9.1041 4.1664 23 6 -0.1285 -9.7881 5.1563 24 6 0.2955 -11.1184 4.5079 25 6 1.5991 -10.4147 4.0890 26 6 1.5091 -7.7873 4.5165 27 6 0.7471 -4.2342 1.0822 28 6 1.8324 -3.6705 0.1576 29 1 2.7795 -3.5595 0.6855 30 1 -0.4849 0.8401 0.0004 31 1 0.0662 -1.3546 -1.6554 32 1 -0.6954 -2.6251 -0.6660 33 1 1.2179 -3.0096 -3.0120 34 1 -0.4984 -3.4753 -2.9360 35 1 3.3349 -5.9557 -0.0536 36 1 2.5112 -6.6408 -1.4736 37 1 0.3826 -6.7060 -0.2603 38 1 1.6273 -7.5340 0.7092 39 1 2.3705 -7.8290 2.4776 40 1 -0.6798 -7.9328 3.0423 41 1 0.3058 -9.0658 2.0189 42 1 0.1823 -9.6898 6.1964 43 1 -1.1788 -9.5411 5.0014 44 1 -0.3312 -11.4124 3.6659 45 1 0.4466 -11.9257 5.2245 46 1 1.9289 -10.6683 3.0815 47 1 2.3955 -10.4925 4.8290 48 1 2.5126 -7.9159 4.9219 49 1 0.8946 -7.1121 5.1120 50 1 0.7063 -3.6445 1.9979 51 1 -0.2186 -4.1920 0.5784 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074316653.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:26 Heat of formation + Delta-G solvation = -25.802557 kcal Electronic energy + Delta-G solvation = -30691.908932 eV Core-core repulsion = 26785.595321 eV Total energy + Delta-G solvation = -3906.313611 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.01676 -40.96517 -39.65014 -37.13125 -36.46650 -35.55714 -33.48841 -33.02291 -31.10571 -29.40029 -27.37000 -26.72546 -26.54717 -25.65293 -25.33995 -24.35016 -22.96642 -22.42889 -20.48092 -19.57475 -18.93093 -18.82396 -18.29614 -17.14394 -17.05110 -16.92802 -16.68467 -16.23088 -16.14863 -16.04327 -15.59674 -15.44577 -15.04010 -14.84162 -14.35923 -14.19544 -13.94025 -13.79861 -13.64934 -13.38806 -13.34615 -13.09271 -12.96962 -12.87540 -12.82787 -12.62222 -12.42843 -12.25301 -12.16146 -11.89169 -11.86725 -11.75619 -11.65943 -11.24021 -11.14893 -10.95973 -10.91009 -10.78684 -10.54834 -10.46691 -9.68266 -8.73629 -7.95337 -5.42630 1.42431 1.43822 1.51302 1.62880 2.00169 2.44506 2.88816 3.19062 3.41022 3.42463 3.48361 3.59715 3.71721 3.76958 3.89147 3.99711 4.01993 4.10210 4.16609 4.20926 4.26978 4.42147 4.45086 4.52735 4.57836 4.62951 4.64424 4.75364 4.80863 4.82734 4.86064 4.89736 4.92082 4.97194 4.97492 5.03590 5.04759 5.09901 5.14756 5.18996 5.22541 5.30107 5.37393 5.47267 5.54702 5.57258 5.59757 5.66986 6.23666 6.34380 6.53180 7.01472 7.22215 7.68677 8.22894 9.09481 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019424 B = 0.003001 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.200827 B = 9327.127532 C =10118.091694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.047 4.047 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.268 4.268 8 H 0.066 0.934 9 N -0.603 5.603 10 C 0.144 3.856 11 C 0.053 3.947 12 O -0.381 6.381 13 C 0.085 3.915 14 H 0.050 0.950 15 C -0.116 4.116 16 C 0.111 3.889 17 N -0.604 5.604 18 C 0.510 3.490 19 O -0.601 6.601 20 C -0.124 4.124 21 C -0.090 4.090 22 C -0.102 4.102 23 C -0.136 4.136 24 C -0.133 4.133 25 C -0.107 4.107 26 C -0.112 4.112 27 C 0.125 3.875 28 C 0.131 3.869 29 H 0.061 0.939 30 H 0.252 0.748 31 H 0.067 0.933 32 H -0.001 1.001 33 H 0.047 0.953 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.145 0.855 40 H 0.066 0.934 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.089 0.911 48 H 0.080 0.920 49 H 0.062 0.938 50 H 0.036 0.964 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.917 -25.079 0.541 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.243 4.243 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.398 4.398 8 H 0.084 0.916 9 N -0.326 5.326 10 C 0.019 3.981 11 C -0.025 4.025 12 O -0.300 6.300 13 C 0.026 3.974 14 H 0.068 0.932 15 C -0.154 4.154 16 C -0.010 4.010 17 N -0.336 5.336 18 C 0.301 3.699 19 O -0.483 6.483 20 C -0.144 4.144 21 C -0.127 4.127 22 C -0.102 4.102 23 C -0.174 4.174 24 C -0.170 4.170 25 C -0.144 4.144 26 C -0.149 4.149 27 C 0.000 4.000 28 C 0.024 3.976 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.017 0.983 33 H 0.065 0.935 34 H 0.127 0.873 35 H 0.110 0.890 36 H 0.133 0.867 37 H 0.093 0.907 38 H 0.141 0.859 39 H 0.162 0.838 40 H 0.084 0.916 41 H 0.125 0.875 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.104 0.896 47 H 0.108 0.892 48 H 0.099 0.901 49 H 0.081 0.919 50 H 0.054 0.946 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.599 -24.666 0.963 24.946 hybrid contribution -0.068 2.483 0.467 2.528 sum 3.531 -22.182 1.431 22.507 Atomic orbital electron populations 1.70177 1.06643 1.26173 1.54741 1.25827 0.96115 1.01587 1.00740 0.85294 0.77570 0.78915 0.78364 1.19778 1.21789 1.20597 1.19433 0.92771 0.85635 1.41980 0.91603 1.44544 1.33674 1.01459 1.52931 1.21295 0.87771 0.98558 0.90489 1.23150 1.00456 0.83974 0.94911 1.87731 1.41877 1.31014 1.69418 1.22273 0.86690 0.96792 0.91651 0.93240 1.21869 0.99019 0.93476 1.01069 1.21956 0.99533 0.92518 0.87028 1.48452 1.68572 1.09997 1.06557 1.21479 0.75585 0.91447 0.81425 1.90662 1.52894 1.57598 1.47111 1.22854 1.02572 0.88838 1.00159 1.22604 0.95385 0.95925 0.98815 1.22455 0.98169 0.93201 0.96336 1.22815 0.98812 0.97076 0.98685 1.22808 0.97417 0.96009 1.00805 1.22670 0.96642 0.92134 1.02990 1.22689 1.01585 0.96813 0.93859 1.21747 0.98786 0.81686 0.97820 1.21759 0.95479 0.86455 0.93933 0.92086 0.93878 0.91481 0.98286 0.93507 0.87344 0.89013 0.86749 0.90734 0.85855 0.83782 0.91559 0.87534 0.90041 0.92214 0.89602 0.90725 0.89638 0.89229 0.90132 0.91922 0.94574 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.02 11.14 21.65 0.24 -55.77 16 2 C -0.05 -2.66 4.96 84.86 0.42 -2.24 16 3 Si 0.97 45.72 29.59 68.60 2.03 47.75 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 7 C -0.27 -15.13 9.69 84.03 0.81 -14.32 16 8 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 9 N -0.60 -30.89 2.71 -672.37 -1.82 -32.72 16 10 C 0.14 7.02 4.93 86.33 0.43 7.45 16 11 C 0.05 1.98 6.97 72.06 0.50 2.48 16 12 O -0.38 -13.33 9.59 -148.98 -1.43 -14.76 16 13 C 0.09 2.83 2.72 30.50 0.08 2.92 16 14 H 0.05 1.69 8.12 -2.39 -0.02 1.67 16 15 C -0.12 -2.56 5.82 30.49 0.18 -2.38 16 16 C 0.11 2.44 6.12 86.34 0.53 2.97 16 17 N -0.60 -19.76 2.98 -817.87 -2.44 -22.20 16 18 C 0.51 17.12 7.23 87.66 0.63 17.76 16 19 O -0.60 -27.08 15.34 -3.04 -0.05 -27.12 16 20 C -0.12 -2.61 2.74 -10.90 -0.03 -2.64 16 21 C -0.09 -1.54 7.12 30.94 0.22 -1.32 16 22 C -0.10 -1.59 1.11 -52.26 -0.06 -1.65 16 23 C -0.14 -2.06 7.84 30.88 0.24 -1.82 16 24 C -0.13 -1.43 8.08 31.23 0.25 -1.18 16 25 C -0.11 -1.13 7.84 30.89 0.24 -0.89 16 26 C -0.11 -2.43 7.17 30.89 0.22 -2.21 16 27 C 0.12 5.46 5.64 86.35 0.49 5.95 16 28 C 0.13 5.63 3.03 44.95 0.14 5.77 16 29 H 0.06 2.72 7.99 -2.39 -0.02 2.71 16 30 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 31 H 0.07 3.63 6.12 -2.39 -0.01 3.61 16 32 H 0.00 -0.05 7.18 -2.39 -0.02 -0.07 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.11 3.44 8.14 -2.39 -0.02 3.43 16 35 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.07 1.71 7.94 -2.38 -0.02 1.69 16 38 H 0.12 1.66 5.66 -2.39 -0.01 1.64 16 39 H 0.14 2.09 7.31 -2.39 -0.02 2.07 16 40 H 0.07 1.45 8.09 -2.39 -0.02 1.43 16 41 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 44 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.06 1.79 7.44 -2.39 -0.02 1.78 16 50 H 0.04 1.91 7.03 -2.39 -0.02 1.90 16 51 H 0.05 2.23 6.56 -2.39 -0.02 2.21 16 Total: -1.00 -74.97 385.04 2.74 -72.24 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.90 Total: 17.96 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 5.30 Total: 14.64 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -4.02 Total: -110.70 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -1.48 Total: -41.88 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -74.97 2.74 -72.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074316653.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.434 kcal (2) G-P(sol) polarization free energy of solvation -74.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds