Wall clock time and date at job start Tue Mar 31 2020 19:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99566 * 2 1 4 4 H 1.48501 * 109.47237 * 269.99837 * 3 2 1 5 5 H 1.48498 * 109.47618 * 29.99755 * 3 2 1 6 6 H 1.48503 * 109.47194 * 150.00088 * 3 2 1 7 7 C 1.38812 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99514 * 197.46945 * 7 2 1 9 9 N 1.36940 * 119.99784 * 17.46731 * 7 2 1 10 10 C 1.46927 * 120.56829 * 27.97230 * 9 7 2 11 11 C 1.53334 * 108.67941 * 125.58655 * 10 9 7 12 12 C 1.52129 * 109.46720 * 53.36347 * 11 10 9 13 13 C 1.54094 * 110.64675 * 64.33922 * 12 11 10 14 14 N 1.47530 * 104.75176 * 81.64883 * 13 12 11 15 15 C 1.34773 * 125.56309 * 204.01858 * 14 13 12 16 16 O 1.21281 * 119.99927 * 179.74944 * 15 14 13 17 17 C 1.50700 * 120.00111 * 0.02562 * 15 14 13 18 18 C 1.53002 * 109.47296 * 179.72627 * 17 15 14 19 19 C 1.52990 * 117.49843 * 243.74675 * 18 17 15 20 20 C 1.52997 * 117.49735 * 175.08488 * 18 17 15 21 21 C 1.46774 * 108.87242 * 24.27869 * 14 13 12 22 22 H 1.08991 * 111.52257 * 235.18397 * 21 14 13 23 23 C 1.54750 * 110.02328 * 109.25473 * 21 14 13 24 24 O 1.42814 * 108.63520 * 259.58863 * 23 21 14 25 25 C 1.42891 * 110.66761 * 2.44558 * 24 23 21 26 26 C 1.54092 * 107.19989 * 341.85625 * 25 24 23 27 27 H 1.09001 * 113.52318 * 261.95010 * 26 25 24 28 28 C 1.52135 * 111.54185 * 300.70795 * 12 11 10 29 29 C 1.46935 * 120.56645 * 207.95142 * 9 7 2 30 30 H 0.97005 * 120.00647 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.60764 * 5.82412 * 10 9 7 32 32 H 1.09004 * 109.73759 * 245.42004 * 10 9 7 33 33 H 1.08999 * 109.47438 * 293.36654 * 11 10 9 34 34 H 1.09000 * 109.47260 * 173.36245 * 11 10 9 35 35 H 1.09005 * 110.37918 * 322.83499 * 13 12 11 36 36 H 1.08994 * 110.38056 * 200.46801 * 13 12 11 37 37 H 1.09002 * 109.46911 * 299.72701 * 17 15 14 38 38 H 1.08997 * 109.47102 * 59.72689 * 17 15 14 39 39 H 1.08999 * 115.54590 * 29.41711 * 18 17 15 40 40 H 1.09006 * 117.50328 * 0.02562 * 19 18 17 41 41 H 1.09001 * 117.49820 * 145.01964 * 19 18 17 42 42 H 1.08999 * 117.49781 * 214.97749 * 20 18 17 43 43 H 1.08998 * 117.50300 * 359.97438 * 20 18 17 44 44 H 1.08999 * 109.10421 * 140.03204 * 23 21 14 45 45 H 1.08997 * 110.04174 * 19.69944 * 23 21 14 46 46 H 1.08998 * 109.89857 * 222.46318 * 25 24 23 47 47 H 1.08994 * 110.03443 * 101.33075 * 25 24 23 48 48 H 1.08995 * 109.47112 * 179.27363 * 28 12 11 49 49 H 1.09002 * 109.46971 * 299.26646 * 28 12 11 50 50 H 1.08998 * 109.60357 * 354.14466 * 29 9 7 51 51 H 1.08997 * 109.60110 * 114.46660 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0529 -1.2234 0.2813 9 7 1.3729 -2.3609 -0.3549 10 6 0.2341 -2.3329 -1.2829 11 6 0.5235 -3.2910 -2.4445 12 6 0.8772 -4.6641 -1.8931 13 6 -0.3251 -5.2769 -1.1491 14 7 -1.1705 -5.8533 -2.2119 15 6 -2.4957 -6.0814 -2.1220 16 8 -3.0943 -6.5572 -3.0634 17 6 -3.2350 -5.7394 -0.8541 18 6 -4.7157 -6.0881 -1.0171 19 6 -5.7227 -4.9376 -0.9620 20 6 -5.6195 -5.9216 0.2061 21 6 -0.3316 -6.1437 -3.3807 22 1 -0.7151 -5.6590 -4.2784 23 6 -0.1682 -7.6733 -3.5488 24 8 1.1041 -8.0566 -3.0252 25 6 1.7822 -6.9276 -2.4708 26 6 1.1099 -5.6654 -3.0446 27 1 1.6425 -5.2365 -3.8933 28 6 2.0963 -4.6043 -0.9850 29 6 1.8166 -3.6535 0.1848 30 1 -0.4851 0.8400 0.0004 31 1 0.1004 -1.3218 -1.6674 32 1 -0.6710 -2.6496 -0.7645 33 1 1.3589 -2.9089 -3.0312 34 1 -0.3595 -3.3705 -3.0786 35 1 -0.8705 -4.5039 -0.6075 36 1 0.0093 -6.0568 -0.4651 37 1 -2.8166 -6.3095 -0.0246 38 1 -3.1331 -4.6734 -0.6504 39 1 -4.9322 -6.9145 -1.6942 40 1 -5.3302 -3.9321 -0.8100 41 1 -6.6019 -5.0072 -1.6025 42 1 -6.4310 -6.6381 0.3335 43 1 -5.1592 -5.5639 1.1271 44 1 -0.2199 -7.9233 -4.6084 45 1 -0.9594 -8.1949 -3.0102 46 1 2.8339 -6.9498 -2.7560 47 1 1.6923 -6.9345 -1.3846 48 1 2.3114 -5.6009 -0.5997 49 1 2.9538 -4.2410 -1.5515 50 1 2.7268 -3.5134 0.7678 51 1 1.0360 -4.0716 0.8204 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079216973.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:07 Heat of formation + Delta-G solvation = -25.710528 kcal Electronic energy + Delta-G solvation = -31290.405709 eV Core-core repulsion = 27384.096088 eV Total energy + Delta-G solvation = -3906.309621 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.45037 -39.09388 -37.77539 -37.00429 -35.45247 -33.39655 -31.54581 -30.55693 -30.36680 -28.99022 -28.29937 -26.36416 -24.69743 -23.62039 -22.46751 -22.37204 -21.88426 -20.83808 -20.16453 -19.21786 -18.26516 -17.45068 -16.81322 -16.32029 -15.90736 -15.76087 -15.39930 -15.02420 -14.83490 -14.38944 -14.15829 -14.09616 -13.94139 -13.47975 -13.39002 -13.16167 -12.97196 -12.61366 -12.25992 -12.08386 -12.02056 -11.81577 -11.67267 -11.55416 -11.47193 -11.24969 -11.22841 -10.99011 -10.80137 -10.59527 -10.42474 -10.31049 -10.29398 -10.08068 -9.93476 -9.78068 -9.66274 -9.52325 -9.34316 -8.63107 -8.53648 -6.76223 -5.87344 -3.29798 2.67484 2.92288 3.32647 3.40448 3.40927 3.75283 3.86508 4.10619 4.42361 4.52637 4.60553 4.67016 4.80973 4.87562 4.92166 5.03591 5.07139 5.11753 5.21568 5.31348 5.34548 5.41047 5.47510 5.49841 5.53189 5.58374 5.60744 5.68541 5.78338 5.79839 5.80571 5.85573 5.86108 5.95129 6.01425 6.06959 6.16469 6.25460 6.30283 6.35292 6.49435 6.52851 6.57247 6.70928 6.82443 7.01996 7.22605 7.53769 7.54753 7.72475 8.19916 8.36519 9.12766 9.76020 10.31538 11.20984 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010180 B = 0.004375 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.845108 B = 6398.605887 C = 8477.325585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.005 3.995 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.172 3.828 11 C -0.127 4.127 12 C -0.045 4.045 13 C 0.104 3.896 14 N -0.609 5.609 15 C 0.535 3.465 16 O -0.544 6.544 17 C -0.108 4.108 18 C -0.139 4.139 19 C -0.178 4.178 20 C -0.181 4.181 21 C 0.114 3.886 22 H 0.099 0.901 23 C 0.051 3.949 24 O -0.383 6.383 25 C 0.056 3.944 26 C -0.126 4.126 27 H 0.109 0.891 28 C -0.125 4.125 29 C 0.145 3.855 30 H 0.254 0.746 31 H 0.089 0.911 32 H 0.017 0.983 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.059 0.941 49 H 0.067 0.933 50 H 0.056 0.944 51 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.230 -12.835 -2.880 13.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.194 4.194 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.166 4.166 12 C -0.045 4.045 13 C -0.018 4.018 14 N -0.342 5.342 15 C 0.325 3.675 16 O -0.422 6.422 17 C -0.148 4.148 18 C -0.158 4.158 19 C -0.215 4.215 20 C -0.218 4.218 21 C 0.010 3.990 22 H 0.117 0.883 23 C -0.027 4.027 24 O -0.302 6.302 25 C -0.020 4.020 26 C -0.145 4.145 27 H 0.127 0.873 28 C -0.165 4.165 29 C 0.018 3.982 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.134 0.866 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.089 0.911 48 H 0.078 0.922 49 H 0.086 0.914 50 H 0.074 0.926 51 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -3.674 -13.144 -3.335 14.050 hybrid contribution 0.349 1.217 -0.022 1.266 sum -3.325 -11.927 -3.356 12.829 Atomic orbital electron populations 1.70013 1.05272 1.25601 1.53767 1.25015 0.95247 0.98403 1.00759 0.86313 0.79170 0.83701 0.77719 1.21453 1.21771 1.20412 1.19191 0.92787 0.84857 1.41532 0.91632 1.44038 1.36226 1.01405 1.49575 1.20803 0.88543 0.98451 0.87540 1.22031 1.00332 0.94042 1.00222 1.20977 0.94857 0.95084 0.93626 1.22563 0.91846 0.97370 0.90000 1.48513 1.07011 1.62774 1.15944 1.20276 0.80057 0.77400 0.89783 1.90665 1.66569 1.45081 1.39895 1.21223 0.93870 1.03854 0.95814 1.22025 0.90253 1.01899 1.01586 1.23057 1.01492 0.95301 1.01630 1.23003 1.02495 1.03117 0.93166 1.22860 0.90882 0.94766 0.90499 0.88324 1.23421 0.85974 0.94137 0.99159 1.88143 1.30620 1.32827 1.78632 1.23353 0.96664 0.83605 0.98366 1.23701 0.93906 0.96950 0.99990 0.87263 1.22033 0.96288 0.99696 0.98462 1.20935 0.97779 0.86949 0.92528 0.93592 0.89299 0.96467 0.92098 0.93212 0.88986 0.91517 0.88583 0.88250 0.86613 0.88528 0.88891 0.88840 0.88639 0.90943 0.91113 0.90064 0.91129 0.92222 0.91442 0.92555 0.96408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.88 11.20 55.49 0.62 -24.26 16 2 C 0.00 0.12 4.90 -17.43 -0.09 0.03 16 3 Si 0.90 20.86 29.59 -169.99 -5.03 15.83 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.25 -6.53 9.58 -15.06 -0.14 -6.67 16 8 H 0.07 1.67 7.89 -52.49 -0.41 1.25 16 9 N -0.59 -13.34 2.98 -172.14 -0.51 -13.85 16 10 C 0.17 3.71 5.01 -3.64 -0.02 3.69 16 11 C -0.13 -2.16 4.90 -27.00 -0.13 -2.29 16 12 C -0.04 -0.63 0.37 -154.11 -0.06 -0.69 16 13 C 0.10 1.43 4.22 -2.91 -0.01 1.42 16 14 N -0.61 -8.43 2.96 -161.84 -0.48 -8.91 16 15 C 0.54 7.82 7.44 -10.99 -0.08 7.74 16 16 O -0.54 -9.37 15.69 5.56 0.09 -9.29 16 17 C -0.11 -1.32 4.99 -27.88 -0.14 -1.45 16 18 C -0.14 -1.64 5.41 -90.63 -0.49 -2.13 16 19 C -0.18 -1.96 10.18 -26.70 -0.27 -2.23 16 20 C -0.18 -1.79 10.25 -26.69 -0.27 -2.07 16 21 C 0.11 1.51 3.40 -65.50 -0.22 1.29 16 22 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 23 C 0.05 0.67 7.40 38.08 0.28 0.95 16 24 O -0.38 -5.28 11.27 -35.23 -0.40 -5.68 16 25 C 0.06 0.67 6.20 37.73 0.23 0.91 16 26 C -0.13 -1.57 3.46 -87.98 -0.30 -1.87 16 27 H 0.11 1.27 8.13 -51.93 -0.42 0.85 16 28 C -0.13 -1.81 4.40 -27.00 -0.12 -1.93 16 29 C 0.14 2.64 6.24 -3.64 -0.02 2.62 16 30 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.09 2.23 6.01 -51.93 -0.31 1.92 16 32 H 0.02 0.39 6.58 -51.93 -0.34 0.05 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 0.82 7.87 -51.93 -0.41 0.42 16 35 H 0.09 1.39 5.52 -51.93 -0.29 1.10 16 36 H 0.07 0.85 7.20 -51.93 -0.37 0.47 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.10 1.23 7.57 -51.93 -0.39 0.84 16 39 H 0.12 1.50 7.31 -51.93 -0.38 1.12 16 40 H 0.10 1.09 8.03 -51.93 -0.42 0.67 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.07 1.01 7.59 -51.93 -0.39 0.62 16 46 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.07 0.84 4.89 -51.93 -0.25 0.59 16 48 H 0.06 0.73 5.76 -51.93 -0.30 0.43 16 49 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.06 1.03 7.93 -51.93 -0.41 0.62 16 51 H 0.02 0.32 7.65 -51.93 -0.40 -0.07 16 LS Contribution 380.87 15.07 5.74 5.74 Total: -1.00 -29.09 380.87 -10.27 -39.36 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -8.44 Total: 3.74 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -1.86 Total: -2.69 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.37 Total: -47.02 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.31 Total: -14.97 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.09 -10.27 -39.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079216973.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.653 kcal (2) G-P(sol) polarization free energy of solvation -29.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds