Wall clock time and date at job start Tue Mar 31 2020 19:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99566 * 2 1 4 4 H 1.48501 * 109.47237 * 269.99837 * 3 2 1 5 5 H 1.48498 * 109.47618 * 29.99755 * 3 2 1 6 6 H 1.48503 * 109.47194 * 150.00088 * 3 2 1 7 7 C 1.38812 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99514 * 197.46945 * 7 2 1 9 9 N 1.36940 * 119.99784 * 17.46731 * 7 2 1 10 10 C 1.46927 * 120.56829 * 27.97230 * 9 7 2 11 11 C 1.53334 * 108.67941 * 125.58655 * 10 9 7 12 12 C 1.52129 * 109.46720 * 53.36347 * 11 10 9 13 13 C 1.54094 * 110.64675 * 64.33922 * 12 11 10 14 14 N 1.47530 * 104.75176 * 81.64883 * 13 12 11 15 15 C 1.34773 * 125.56309 * 204.01858 * 14 13 12 16 16 O 1.21281 * 119.99927 * 179.74944 * 15 14 13 17 17 C 1.50700 * 120.00111 * 0.02562 * 15 14 13 18 18 C 1.53002 * 109.47296 * 179.72627 * 17 15 14 19 19 C 1.52990 * 117.49843 * 243.74675 * 18 17 15 20 20 C 1.52997 * 117.49735 * 175.08488 * 18 17 15 21 21 C 1.46774 * 108.87242 * 24.27869 * 14 13 12 22 22 H 1.08991 * 111.52257 * 235.18397 * 21 14 13 23 23 C 1.54750 * 110.02328 * 109.25473 * 21 14 13 24 24 O 1.42814 * 108.63520 * 259.58863 * 23 21 14 25 25 C 1.42891 * 110.66761 * 2.44558 * 24 23 21 26 26 C 1.54092 * 107.19989 * 341.85625 * 25 24 23 27 27 H 1.09001 * 113.52318 * 261.95010 * 26 25 24 28 28 C 1.52135 * 111.54185 * 300.70795 * 12 11 10 29 29 C 1.46935 * 120.56645 * 207.95142 * 9 7 2 30 30 H 0.97005 * 120.00647 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.60764 * 5.82412 * 10 9 7 32 32 H 1.09004 * 109.73759 * 245.42004 * 10 9 7 33 33 H 1.08999 * 109.47438 * 293.36654 * 11 10 9 34 34 H 1.09000 * 109.47260 * 173.36245 * 11 10 9 35 35 H 1.09005 * 110.37918 * 322.83499 * 13 12 11 36 36 H 1.08994 * 110.38056 * 200.46801 * 13 12 11 37 37 H 1.09002 * 109.46911 * 299.72701 * 17 15 14 38 38 H 1.08997 * 109.47102 * 59.72689 * 17 15 14 39 39 H 1.08999 * 115.54590 * 29.41711 * 18 17 15 40 40 H 1.09006 * 117.50328 * 0.02562 * 19 18 17 41 41 H 1.09001 * 117.49820 * 145.01964 * 19 18 17 42 42 H 1.08999 * 117.49781 * 214.97749 * 20 18 17 43 43 H 1.08998 * 117.50300 * 359.97438 * 20 18 17 44 44 H 1.08999 * 109.10421 * 140.03204 * 23 21 14 45 45 H 1.08997 * 110.04174 * 19.69944 * 23 21 14 46 46 H 1.08998 * 109.89857 * 222.46318 * 25 24 23 47 47 H 1.08994 * 110.03443 * 101.33075 * 25 24 23 48 48 H 1.08995 * 109.47112 * 179.27363 * 28 12 11 49 49 H 1.09002 * 109.46971 * 299.26646 * 28 12 11 50 50 H 1.08998 * 109.60357 * 354.14466 * 29 9 7 51 51 H 1.08997 * 109.60110 * 114.46660 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0529 -1.2234 0.2813 9 7 1.3729 -2.3609 -0.3549 10 6 0.2341 -2.3329 -1.2829 11 6 0.5235 -3.2910 -2.4445 12 6 0.8772 -4.6641 -1.8931 13 6 -0.3251 -5.2769 -1.1491 14 7 -1.1705 -5.8533 -2.2119 15 6 -2.4957 -6.0814 -2.1220 16 8 -3.0943 -6.5572 -3.0634 17 6 -3.2350 -5.7394 -0.8541 18 6 -4.7157 -6.0881 -1.0171 19 6 -5.7227 -4.9376 -0.9620 20 6 -5.6195 -5.9216 0.2061 21 6 -0.3316 -6.1437 -3.3807 22 1 -0.7151 -5.6590 -4.2784 23 6 -0.1682 -7.6733 -3.5488 24 8 1.1041 -8.0566 -3.0252 25 6 1.7822 -6.9276 -2.4708 26 6 1.1099 -5.6654 -3.0446 27 1 1.6425 -5.2365 -3.8933 28 6 2.0963 -4.6043 -0.9850 29 6 1.8166 -3.6535 0.1848 30 1 -0.4851 0.8400 0.0004 31 1 0.1004 -1.3218 -1.6674 32 1 -0.6710 -2.6496 -0.7645 33 1 1.3589 -2.9089 -3.0312 34 1 -0.3595 -3.3705 -3.0786 35 1 -0.8705 -4.5039 -0.6075 36 1 0.0093 -6.0568 -0.4651 37 1 -2.8166 -6.3095 -0.0246 38 1 -3.1331 -4.6734 -0.6504 39 1 -4.9322 -6.9145 -1.6942 40 1 -5.3302 -3.9321 -0.8100 41 1 -6.6019 -5.0072 -1.6025 42 1 -6.4310 -6.6381 0.3335 43 1 -5.1592 -5.5639 1.1271 44 1 -0.2199 -7.9233 -4.6084 45 1 -0.9594 -8.1949 -3.0102 46 1 2.8339 -6.9498 -2.7560 47 1 1.6923 -6.9345 -1.3846 48 1 2.3114 -5.6009 -0.5997 49 1 2.9538 -4.2410 -1.5515 50 1 2.7268 -3.5134 0.7678 51 1 1.0360 -4.0716 0.8204 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079216973.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:06 Heat of formation + Delta-G solvation = -41.469519 kcal Electronic energy + Delta-G solvation = -31291.089070 eV Core-core repulsion = 27384.096088 eV Total energy + Delta-G solvation = -3906.992982 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.57502 -40.22293 -39.05998 -37.94395 -36.83003 -34.88276 -33.05328 -31.83741 -31.80228 -30.10786 -29.48895 -27.66455 -26.29856 -24.86226 -23.71688 -23.26896 -23.19139 -22.06268 -21.27313 -20.37230 -19.60823 -18.71030 -18.28663 -17.36921 -17.14537 -16.89433 -16.65245 -16.43384 -15.99262 -15.66733 -15.47472 -15.30450 -15.04365 -14.94854 -14.68802 -14.59977 -14.26823 -13.76069 -13.54022 -13.25441 -13.17629 -13.15040 -13.03203 -12.81798 -12.54919 -12.53085 -12.40811 -12.35712 -12.33595 -12.12446 -11.94403 -11.82265 -11.45433 -11.32653 -11.13412 -11.07818 -10.97199 -10.78498 -10.48677 -10.39697 -9.76777 -8.62238 -7.84710 -5.28218 1.47414 1.50092 1.53127 1.57163 1.84196 2.53243 2.86081 2.87098 3.06169 3.28106 3.42544 3.61018 3.71482 3.73994 3.75930 3.84370 3.99177 4.01584 4.05836 4.15039 4.16968 4.24209 4.37975 4.44002 4.55249 4.58418 4.60496 4.63949 4.70788 4.71541 4.72891 4.76492 4.78380 4.86632 4.92865 4.95709 5.01334 5.09009 5.17341 5.23477 5.25157 5.29938 5.31080 5.33545 5.42102 5.56206 5.68926 5.80026 6.02933 6.40912 6.42724 7.05994 7.19133 7.91778 8.41150 9.20773 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010180 B = 0.004375 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.845108 B = 6398.605887 C = 8477.325585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.047 4.047 3 Si 0.957 3.043 4 H -0.289 1.289 5 H -0.299 1.299 6 H -0.268 1.268 7 C -0.256 4.256 8 H 0.067 0.933 9 N -0.606 5.606 10 C 0.182 3.818 11 C -0.111 4.111 12 C -0.040 4.040 13 C 0.109 3.891 14 N -0.608 5.608 15 C 0.530 3.470 16 O -0.574 6.574 17 C -0.103 4.103 18 C -0.152 4.152 19 C -0.187 4.187 20 C -0.162 4.162 21 C 0.108 3.892 22 H 0.095 0.905 23 C 0.057 3.943 24 O -0.393 6.393 25 C 0.056 3.944 26 C -0.113 4.113 27 H 0.123 0.877 28 C -0.112 4.112 29 C 0.139 3.861 30 H 0.247 0.753 31 H 0.047 0.953 32 H 0.002 0.998 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.057 0.943 46 H 0.103 0.897 47 H 0.075 0.925 48 H 0.094 0.906 49 H 0.068 0.932 50 H 0.055 0.945 51 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.884 -14.457 -2.686 14.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.243 4.243 3 Si 0.786 3.214 4 H -0.216 1.216 5 H -0.226 1.226 6 H -0.193 1.193 7 C -0.387 4.387 8 H 0.085 0.915 9 N -0.330 5.330 10 C 0.056 3.944 11 C -0.150 4.150 12 C -0.041 4.041 13 C -0.013 4.013 14 N -0.341 5.341 15 C 0.321 3.679 16 O -0.454 6.454 17 C -0.142 4.142 18 C -0.171 4.171 19 C -0.224 4.224 20 C -0.198 4.198 21 C 0.004 3.996 22 H 0.113 0.887 23 C -0.021 4.021 24 O -0.313 6.313 25 C -0.019 4.019 26 C -0.132 4.132 27 H 0.141 0.859 28 C -0.151 4.151 29 C 0.014 3.986 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.020 0.980 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.132 0.868 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.108 0.892 41 H 0.117 0.883 42 H 0.127 0.873 43 H 0.122 0.878 44 H 0.101 0.899 45 H 0.075 0.925 46 H 0.121 0.879 47 H 0.093 0.907 48 H 0.112 0.888 49 H 0.087 0.913 50 H 0.073 0.927 51 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -2.291 -14.792 -3.133 15.293 hybrid contribution -0.073 1.696 -0.064 1.699 sum -2.364 -13.097 -3.197 13.687 Atomic orbital electron populations 1.70155 1.06515 1.25578 1.55697 1.25656 0.95866 1.01108 1.01628 0.85414 0.78315 0.80280 0.77347 1.21625 1.22583 1.19288 1.19505 0.93009 0.86149 1.40023 0.91526 1.44265 1.36182 1.02272 1.50258 1.20541 0.88001 0.97244 0.88620 1.21772 1.00211 0.94786 0.98240 1.20850 0.95057 0.93735 0.94482 1.22518 0.91352 0.97436 0.90002 1.48554 1.06980 1.62289 1.16231 1.20694 0.80241 0.76825 0.90131 1.90646 1.67168 1.46562 1.41058 1.21223 0.94069 1.03717 0.95186 1.21955 0.90268 1.01906 1.02970 1.23113 1.01499 0.94991 1.02781 1.23089 1.01870 1.02297 0.92586 1.22959 0.91315 0.95130 0.90215 0.88723 1.23331 0.85576 0.93563 0.99585 1.88142 1.30652 1.33639 1.78832 1.23460 0.97475 0.82481 0.98515 1.23652 0.93514 0.96560 0.99489 0.85905 1.21899 0.96089 1.00294 0.96805 1.21121 0.97606 0.85721 0.94136 0.94350 0.93475 0.98008 0.92458 0.93102 0.90618 0.89615 0.86833 0.88695 0.87978 0.89155 0.88342 0.87305 0.87849 0.89864 0.92518 0.87945 0.90679 0.88819 0.91345 0.92650 0.96021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.04 11.20 21.65 0.24 -52.80 16 2 C -0.05 -2.51 4.90 84.86 0.42 -2.10 16 3 Si 0.96 43.40 29.59 68.60 2.03 45.43 16 4 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.26 -13.19 9.58 84.03 0.80 -12.39 16 8 H 0.07 3.35 7.89 -2.91 -0.02 3.33 16 9 N -0.61 -27.35 2.98 -698.54 -2.08 -29.43 16 10 C 0.18 7.96 5.01 86.41 0.43 8.39 16 11 C -0.11 -3.70 4.90 30.42 0.15 -3.55 16 12 C -0.04 -1.05 0.37 -51.92 -0.02 -1.07 16 13 C 0.11 2.79 4.22 86.55 0.37 3.15 16 14 N -0.61 -16.13 2.96 -784.34 -2.32 -18.44 16 15 C 0.53 15.33 7.44 87.66 0.65 15.98 16 16 O -0.57 -19.87 15.69 -3.03 -0.05 -19.92 16 17 C -0.10 -2.45 4.99 29.85 0.15 -2.30 16 18 C -0.15 -3.54 5.41 -10.80 -0.06 -3.59 16 19 C -0.19 -4.05 10.18 30.62 0.31 -3.74 16 20 C -0.16 -2.98 10.25 30.62 0.31 -2.66 16 21 C 0.11 2.66 3.40 46.42 0.16 2.82 16 22 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 23 C 0.06 1.39 7.40 72.58 0.54 1.92 16 24 O -0.39 -9.64 11.27 -148.98 -1.68 -11.32 16 25 C 0.06 1.12 6.20 72.35 0.45 1.57 16 26 C -0.11 -2.46 3.46 -9.08 -0.03 -2.49 16 27 H 0.12 2.42 8.13 -2.39 -0.02 2.40 16 28 C -0.11 -2.88 4.40 30.42 0.13 -2.75 16 29 C 0.14 4.85 6.24 86.41 0.54 5.39 16 30 H 0.25 13.81 8.31 -92.70 -0.77 13.04 16 31 H 0.05 2.46 6.01 -2.39 -0.01 2.44 16 32 H 0.00 0.09 6.58 -2.38 -0.02 0.08 16 33 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.05 1.67 7.87 -2.39 -0.02 1.65 16 35 H 0.08 2.24 5.52 -2.38 -0.01 2.22 16 36 H 0.09 1.91 7.20 -2.39 -0.02 1.89 16 37 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.09 2.36 7.57 -2.39 -0.02 2.34 16 39 H 0.10 2.67 7.31 -2.39 -0.02 2.65 16 40 H 0.09 2.06 8.03 -2.38 -0.02 2.04 16 41 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.10 1.75 8.14 -2.39 -0.02 1.74 16 44 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.06 1.55 7.59 -2.39 -0.02 1.54 16 46 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.08 1.44 4.89 -2.39 -0.01 1.43 16 48 H 0.09 1.85 5.76 -2.39 -0.01 1.83 16 49 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 51 H 0.02 0.75 7.65 -2.39 -0.02 0.73 16 Total: -1.00 -63.81 380.87 2.37 -61.44 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.92 Total: 22.45 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 5.30 Total: 2.58 kcal Atomic # 7 Polarization: -96.51 SS G_CDS: -4.16 Total: -100.67 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -1.73 Total: -31.24 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -63.81 2.37 -61.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079216973.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.973 kcal (2) G-P(sol) polarization free energy of solvation -63.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds