Wall clock time and date at job start Tue Mar 31 2020 19:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48492 * 109.47289 * 270.59379 * 3 2 1 5 5 H 1.48506 * 109.46763 * 30.59354 * 3 2 1 6 6 H 1.48498 * 109.47194 * 150.58969 * 3 2 1 7 7 C 1.38808 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99725 * 335.43359 * 7 2 1 9 9 N 1.36937 * 120.00092 * 155.44046 * 7 2 1 10 10 C 1.49489 * 125.92636 * 333.76897 * 9 7 2 11 11 C 1.48199 * 104.35423 * 176.31676 * 10 9 7 12 12 H 1.08994 * 102.83598 * 286.86021 * 11 10 9 13 13 C 1.55617 * 104.06040 * 30.99069 * 11 10 9 14 14 H 1.09003 * 111.61060 * 71.81587 * 13 11 10 15 15 C 1.49478 * 125.92933 * 153.79513 * 9 7 2 16 16 C 1.52729 * 103.53727 * 191.43188 * 13 11 10 17 17 H 1.08998 * 114.33228 * 156.42587 * 16 13 11 18 18 C 1.54713 * 108.17794 * 28.50277 * 16 13 11 19 19 C 1.53910 * 109.18039 * 285.16049 * 18 16 13 20 20 C 1.48886 * 132.34173 * 164.51737 * 11 10 9 21 21 H 1.08995 * 113.32673 * 21.68131 * 20 11 10 22 22 C 1.55213 * 108.59893 * 253.75920 * 20 11 10 23 23 N 1.48649 * 106.23965 * 291.55910 * 22 20 11 24 24 C 1.34778 * 123.11979 * 213.47465 * 23 22 20 25 25 O 1.21278 * 120.00552 * 179.70863 * 24 23 22 26 26 C 1.50707 * 119.99582 * 359.71183 * 24 23 22 27 27 C 1.52999 * 109.46839 * 185.81906 * 26 24 23 28 28 O 1.42901 * 112.84926 * 58.89989 * 27 26 24 29 29 C 1.53784 * 113.61309 * 190.09192 * 27 26 24 30 30 C 1.54054 * 86.98454 * 140.02167 * 29 27 26 31 31 C 1.53781 * 113.61561 * 287.70080 * 27 26 24 32 32 H 0.96999 * 120.00198 * 359.97438 * 1 2 3 33 33 H 1.08996 * 110.46026 * 57.59531 * 10 9 7 34 34 H 1.09006 * 110.45526 * 295.03468 * 10 9 7 35 35 H 1.08993 * 110.68028 * 36.13055 * 15 9 7 36 36 H 1.08996 * 110.82275 * 273.03007 * 15 9 7 37 37 H 1.08999 * 109.51999 * 45.07853 * 18 16 13 38 38 H 1.09006 * 109.51471 * 165.19125 * 18 16 13 39 39 H 1.08997 * 110.07510 * 156.16416 * 19 18 16 40 40 H 1.08998 * 110.08135 * 277.64908 * 19 18 16 41 41 H 1.08993 * 110.12698 * 172.32891 * 22 20 11 42 42 H 1.09003 * 109.97477 * 50.70509 * 22 20 11 43 43 H 1.08999 * 109.46824 * 65.81773 * 26 24 23 44 44 H 1.09000 * 109.46884 * 305.82150 * 26 24 23 45 45 H 0.96706 * 113.99895 * 53.88977 * 28 27 26 46 46 H 1.08992 * 113.61618 * 254.61669 * 29 27 26 47 47 H 1.09004 * 113.61444 * 25.52057 * 29 27 26 48 48 H 1.09000 * 113.61865 * 220.02726 * 30 29 27 49 49 H 1.08996 * 113.61312 * 89.11350 * 30 29 27 50 50 H 1.08998 * 113.61790 * 334.48553 * 31 27 26 51 51 H 1.09003 * 113.61100 * 105.30786 * 31 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4851 2.0537 -1.3999 5 1 1.4539 2.6490 0.7126 6 1 3.5539 1.4367 0.6875 7 6 2.0103 -1.2021 -0.0005 8 1 1.5435 -2.0953 0.3879 9 7 3.2867 -1.2556 -0.4935 10 6 3.8692 -0.3394 -1.5211 11 6 5.2853 -0.7625 -1.6301 12 1 5.7215 -0.3897 -0.7034 13 6 5.2489 -2.2877 -1.3232 14 1 4.7986 -2.8510 -2.1405 15 6 4.3392 -2.2405 -0.0978 16 6 6.7217 -2.6525 -1.1488 17 1 6.8950 -3.5463 -0.5494 18 6 7.4714 -1.4008 -0.6343 19 6 7.6448 -0.4032 -1.7934 20 6 6.3376 -0.4909 -2.6478 21 1 6.1436 0.4024 -3.2413 22 6 6.5558 -1.7766 -3.4895 23 7 7.1795 -2.7702 -2.5766 24 6 8.0762 -3.6880 -2.9891 25 8 8.5540 -4.4692 -2.1939 26 6 8.4854 -3.7433 -4.4385 27 6 9.3927 -4.9539 -4.6664 28 8 8.7649 -6.1906 -4.3219 29 6 10.0645 -4.9685 -6.0496 30 6 11.3333 -5.4757 -5.3380 31 6 10.8002 -4.7901 -4.0688 32 1 -0.4850 0.8400 0.0004 33 1 3.8057 0.6965 -1.1878 34 1 3.3594 -0.4651 -2.4763 35 1 3.8986 -3.2190 0.0926 36 1 4.8885 -1.8904 0.7762 37 1 6.8954 -0.9341 0.1648 38 1 8.4504 -1.6932 -0.2546 39 1 7.7694 0.6066 -1.4025 40 1 8.5085 -0.6790 -2.3984 41 1 7.2210 -1.5679 -4.3273 42 1 5.5987 -2.1505 -3.8531 43 1 9.0233 -2.8318 -4.6992 44 1 7.5969 -3.8322 -5.0636 45 1 7.9131 -6.3338 -4.7567 46 1 9.6297 -5.6925 -6.7386 47 1 10.1777 -3.9781 -6.4906 48 1 12.2539 -5.0337 -5.7190 49 1 11.3849 -6.5615 -5.2588 50 1 11.1141 -3.7511 -3.9692 51 1 10.9583 -5.3692 -3.1590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089807285.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:45 Heat of formation + Delta-G solvation = 20.577027 kcal Electronic energy + Delta-G solvation = -30981.435222 eV Core-core repulsion = 27077.132780 eV Total energy + Delta-G solvation = -3904.302442 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.84359 -40.17984 -38.24640 -36.13285 -34.76173 -33.15201 -32.18340 -31.68829 -30.15142 -29.52695 -27.81443 -25.99587 -25.79864 -24.07894 -23.58449 -21.89290 -21.71205 -20.40967 -19.92095 -19.58022 -17.38456 -17.09868 -17.02191 -16.70339 -16.38757 -16.14326 -15.45125 -15.32168 -15.08933 -14.55983 -14.42925 -13.94735 -13.64891 -13.43735 -13.18358 -12.92379 -12.92250 -12.72154 -12.52851 -12.34331 -12.24415 -11.95595 -11.92192 -11.71977 -11.51323 -11.33647 -11.23016 -11.17341 -11.15041 -10.85874 -10.67263 -10.56673 -10.39966 -10.16214 -10.09966 -9.78894 -9.68156 -9.42181 -9.28125 -8.59618 -8.47157 -7.02657 -5.99684 -3.30663 2.70135 2.81877 3.31261 3.45105 3.49286 3.84541 4.10484 4.31259 4.34469 4.40941 4.48671 4.52560 4.56528 4.60179 4.81768 4.83261 5.00188 5.00496 5.12811 5.16666 5.19246 5.20549 5.27461 5.32951 5.34541 5.39356 5.43304 5.54924 5.57661 5.59806 5.73242 5.77015 5.90036 5.92461 5.93569 5.97363 5.99029 6.07262 6.09558 6.16562 6.26160 6.34862 6.45031 6.54618 6.60750 6.79027 6.84007 7.47954 7.52759 7.66983 8.24084 8.28498 8.77879 9.64799 10.17761 11.16924 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.026811 B = 0.002932 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.095807 B = 9547.511710 C = 9777.761011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.027 3.973 3 Si 0.882 3.118 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.088 0.912 9 N -0.611 5.611 10 C 0.146 3.854 11 C -0.139 4.139 12 H 0.068 0.932 13 C -0.118 4.118 14 H 0.087 0.913 15 C 0.142 3.858 16 C 0.164 3.836 17 H 0.111 0.889 18 C -0.134 4.134 19 C -0.109 4.109 20 C -0.073 4.073 21 H 0.101 0.899 22 C 0.114 3.886 23 N -0.621 5.621 24 C 0.519 3.481 25 O -0.527 6.527 26 C -0.160 4.160 27 C 0.128 3.872 28 O -0.527 6.527 29 C -0.167 4.167 30 C -0.137 4.137 31 C -0.118 4.118 32 H 0.263 0.737 33 H 0.032 0.968 34 H 0.037 0.963 35 H 0.052 0.948 36 H 0.029 0.971 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.373 0.627 46 H 0.072 0.928 47 H 0.087 0.913 48 H 0.066 0.934 49 H 0.083 0.917 50 H 0.086 0.914 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.379 -4.741 -13.056 25.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.172 4.172 3 Si 0.713 3.287 4 H -0.214 1.214 5 H -0.231 1.231 6 H -0.203 1.203 7 C -0.368 4.368 8 H 0.106 0.894 9 N -0.340 5.340 10 C 0.023 3.977 11 C -0.158 4.158 12 H 0.087 0.913 13 C -0.137 4.137 14 H 0.106 0.894 15 C 0.017 3.983 16 C 0.062 3.938 17 H 0.129 0.871 18 C -0.172 4.172 19 C -0.146 4.146 20 C -0.092 4.092 21 H 0.119 0.881 22 C -0.008 4.008 23 N -0.356 5.356 24 C 0.307 3.693 25 O -0.403 6.403 26 C -0.201 4.201 27 C 0.086 3.914 28 O -0.331 6.331 29 C -0.205 4.205 30 C -0.174 4.174 31 C -0.156 4.156 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.110 0.890 45 H 0.220 0.780 46 H 0.091 0.909 47 H 0.105 0.895 48 H 0.085 0.915 49 H 0.101 0.899 50 H 0.105 0.895 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 21.961 -5.181 -12.185 25.644 hybrid contribution -0.269 1.343 -0.350 1.413 sum 21.693 -3.838 -12.535 25.346 Atomic orbital electron populations 1.69875 1.05705 1.26665 1.52311 1.25161 0.95111 0.97438 0.99505 0.86870 0.79635 0.84867 0.77332 1.21362 1.23095 1.20290 1.18603 0.85689 0.95130 1.37414 0.89420 1.45831 1.09608 1.34925 1.43609 1.20331 0.90242 0.93895 0.93261 1.20989 0.96761 0.97326 1.00701 0.91338 1.22727 0.93531 0.96724 1.00765 0.89430 1.21361 0.89609 0.94409 0.92929 1.22257 0.92291 0.97965 0.81283 0.87090 1.22501 1.00390 0.95719 0.98596 1.22483 0.96677 0.98779 0.96704 1.21461 0.94263 0.97316 0.96171 0.88126 1.22408 0.98111 0.88447 0.91848 1.49859 1.42630 1.33085 1.10059 1.20254 0.78818 0.80076 0.90157 1.90727 1.54057 1.39894 1.55622 1.22364 1.01756 1.00840 0.95114 1.21861 0.91834 0.83259 0.94404 1.86604 1.38163 1.36682 1.71677 1.23713 0.97962 1.02011 0.96772 1.22823 0.96953 1.00966 0.96675 1.22900 0.92771 1.01157 0.98724 0.92685 0.95041 0.94521 0.92924 0.95322 0.90258 0.91866 0.91706 0.91877 0.90538 0.90918 0.88145 0.89004 0.77997 0.90924 0.89458 0.91496 0.89861 0.89540 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.97 55.49 0.78 -26.88 16 2 C 0.03 0.79 5.41 -17.43 -0.09 0.70 16 3 Si 0.88 22.40 24.66 -169.99 -4.19 18.21 16 4 H -0.29 -7.00 6.88 56.52 0.39 -6.61 16 5 H -0.30 -7.81 7.11 56.52 0.40 -7.40 16 6 H -0.28 -6.94 7.07 56.52 0.40 -6.54 16 7 C -0.24 -6.80 10.55 -15.06 -0.16 -6.96 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 9 N -0.61 -14.53 3.17 -171.22 -0.54 -15.08 16 10 C 0.15 3.05 5.81 -4.71 -0.03 3.02 16 11 C -0.14 -2.20 2.45 -93.58 -0.23 -2.42 16 12 H 0.07 1.15 4.12 -51.93 -0.21 0.93 16 13 C -0.12 -1.85 2.54 -89.53 -0.23 -2.07 16 14 H 0.09 1.43 6.98 -51.93 -0.36 1.07 16 15 C 0.14 2.74 6.74 -2.55 -0.02 2.72 16 16 C 0.16 2.24 4.10 -64.98 -0.27 1.98 16 17 H 0.11 1.63 7.77 -51.93 -0.40 1.23 16 18 C -0.13 -1.69 5.54 -25.36 -0.14 -1.83 16 19 C -0.11 -1.20 5.54 -24.43 -0.14 -1.34 16 20 C -0.07 -0.85 4.34 -89.63 -0.39 -1.24 16 21 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 22 C 0.11 1.16 5.22 -1.68 -0.01 1.15 16 23 N -0.62 -7.43 2.19 -159.14 -0.35 -7.78 16 24 C 0.52 6.46 7.57 -10.98 -0.08 6.38 16 25 O -0.53 -8.59 14.92 -9.44 -0.14 -8.73 16 26 C -0.16 -1.37 3.91 -27.88 -0.11 -1.48 16 27 C 0.13 1.19 0.95 -89.81 -0.09 1.11 16 28 O -0.53 -5.90 12.55 -50.23 -0.63 -6.53 16 29 C -0.17 -1.17 7.49 -25.77 -0.19 -1.37 16 30 C -0.14 -1.09 8.03 -25.77 -0.21 -1.29 16 31 C -0.12 -1.16 6.69 -25.92 -0.17 -1.33 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.03 0.72 3.49 -51.93 -0.18 0.54 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.03 0.55 7.73 -51.93 -0.40 0.15 16 37 H 0.08 1.09 6.08 -51.93 -0.32 0.77 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.64 7.69 -51.93 -0.40 0.24 16 41 H 0.08 0.56 7.00 -51.93 -0.36 0.20 16 42 H 0.07 0.78 7.26 -51.93 -0.38 0.40 16 43 H 0.10 0.68 7.90 -51.93 -0.41 0.27 16 44 H 0.09 0.63 8.06 -51.93 -0.42 0.21 16 45 H 0.37 2.83 9.09 45.56 0.41 3.24 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.09 0.49 8.10 -51.93 -0.42 0.07 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 51 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -34.05 374.43 -9.63 -43.68 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.65 Total: 1.73 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -2.55 Total: -4.28 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -0.12 Total: -49.73 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.77 Total: -15.26 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.19 Total: 18.21 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.05 -9.63 -43.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089807285.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.258 kcal (2) G-P(sol) polarization free energy of solvation -34.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds