Wall clock time and date at job start Tue Mar 31 2020 19:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48492 * 109.47289 * 270.59379 * 3 2 1 5 5 H 1.48506 * 109.46763 * 30.59354 * 3 2 1 6 6 H 1.48498 * 109.47194 * 150.58969 * 3 2 1 7 7 C 1.38808 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99725 * 335.43359 * 7 2 1 9 9 N 1.36937 * 120.00092 * 155.44046 * 7 2 1 10 10 C 1.49489 * 125.92636 * 333.76897 * 9 7 2 11 11 C 1.48199 * 104.35423 * 176.31676 * 10 9 7 12 12 H 1.08994 * 102.83598 * 286.86021 * 11 10 9 13 13 C 1.55617 * 104.06040 * 30.99069 * 11 10 9 14 14 H 1.09003 * 111.61060 * 71.81587 * 13 11 10 15 15 C 1.49478 * 125.92933 * 153.79513 * 9 7 2 16 16 C 1.52729 * 103.53727 * 191.43188 * 13 11 10 17 17 H 1.08998 * 114.33228 * 156.42587 * 16 13 11 18 18 C 1.54713 * 108.17794 * 28.50277 * 16 13 11 19 19 C 1.53910 * 109.18039 * 285.16049 * 18 16 13 20 20 C 1.48886 * 132.34173 * 164.51737 * 11 10 9 21 21 H 1.08995 * 113.32673 * 21.68131 * 20 11 10 22 22 C 1.55213 * 108.59893 * 253.75920 * 20 11 10 23 23 N 1.48649 * 106.23965 * 291.55910 * 22 20 11 24 24 C 1.34778 * 123.11979 * 213.47465 * 23 22 20 25 25 O 1.21278 * 120.00552 * 179.70863 * 24 23 22 26 26 C 1.50707 * 119.99582 * 359.71183 * 24 23 22 27 27 C 1.52999 * 109.46839 * 185.81906 * 26 24 23 28 28 O 1.42901 * 112.84926 * 58.89989 * 27 26 24 29 29 C 1.53784 * 113.61309 * 190.09192 * 27 26 24 30 30 C 1.54054 * 86.98454 * 140.02167 * 29 27 26 31 31 C 1.53781 * 113.61561 * 287.70080 * 27 26 24 32 32 H 0.96999 * 120.00198 * 359.97438 * 1 2 3 33 33 H 1.08996 * 110.46026 * 57.59531 * 10 9 7 34 34 H 1.09006 * 110.45526 * 295.03468 * 10 9 7 35 35 H 1.08993 * 110.68028 * 36.13055 * 15 9 7 36 36 H 1.08996 * 110.82275 * 273.03007 * 15 9 7 37 37 H 1.08999 * 109.51999 * 45.07853 * 18 16 13 38 38 H 1.09006 * 109.51471 * 165.19125 * 18 16 13 39 39 H 1.08997 * 110.07510 * 156.16416 * 19 18 16 40 40 H 1.08998 * 110.08135 * 277.64908 * 19 18 16 41 41 H 1.08993 * 110.12698 * 172.32891 * 22 20 11 42 42 H 1.09003 * 109.97477 * 50.70509 * 22 20 11 43 43 H 1.08999 * 109.46824 * 65.81773 * 26 24 23 44 44 H 1.09000 * 109.46884 * 305.82150 * 26 24 23 45 45 H 0.96706 * 113.99895 * 53.88977 * 28 27 26 46 46 H 1.08992 * 113.61618 * 254.61669 * 29 27 26 47 47 H 1.09004 * 113.61444 * 25.52057 * 29 27 26 48 48 H 1.09000 * 113.61865 * 220.02726 * 30 29 27 49 49 H 1.08996 * 113.61312 * 89.11350 * 30 29 27 50 50 H 1.08998 * 113.61790 * 334.48553 * 31 27 26 51 51 H 1.09003 * 113.61100 * 105.30786 * 31 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4851 2.0537 -1.3999 5 1 1.4539 2.6490 0.7126 6 1 3.5539 1.4367 0.6875 7 6 2.0103 -1.2021 -0.0005 8 1 1.5435 -2.0953 0.3879 9 7 3.2867 -1.2556 -0.4935 10 6 3.8692 -0.3394 -1.5211 11 6 5.2853 -0.7625 -1.6301 12 1 5.7215 -0.3897 -0.7034 13 6 5.2489 -2.2877 -1.3232 14 1 4.7986 -2.8510 -2.1405 15 6 4.3392 -2.2405 -0.0978 16 6 6.7217 -2.6525 -1.1488 17 1 6.8950 -3.5463 -0.5494 18 6 7.4714 -1.4008 -0.6343 19 6 7.6448 -0.4032 -1.7934 20 6 6.3376 -0.4909 -2.6478 21 1 6.1436 0.4024 -3.2413 22 6 6.5558 -1.7766 -3.4895 23 7 7.1795 -2.7702 -2.5766 24 6 8.0762 -3.6880 -2.9891 25 8 8.5540 -4.4692 -2.1939 26 6 8.4854 -3.7433 -4.4385 27 6 9.3927 -4.9539 -4.6664 28 8 8.7649 -6.1906 -4.3219 29 6 10.0645 -4.9685 -6.0496 30 6 11.3333 -5.4757 -5.3380 31 6 10.8002 -4.7901 -4.0688 32 1 -0.4850 0.8400 0.0004 33 1 3.8057 0.6965 -1.1878 34 1 3.3594 -0.4651 -2.4763 35 1 3.8986 -3.2190 0.0926 36 1 4.8885 -1.8904 0.7762 37 1 6.8954 -0.9341 0.1648 38 1 8.4504 -1.6932 -0.2546 39 1 7.7694 0.6066 -1.4025 40 1 8.5085 -0.6790 -2.3984 41 1 7.2210 -1.5679 -4.3273 42 1 5.5987 -2.1505 -3.8531 43 1 9.0233 -2.8318 -4.6992 44 1 7.5969 -3.8322 -5.0636 45 1 7.9131 -6.3338 -4.7567 46 1 9.6297 -5.6925 -6.7386 47 1 10.1777 -3.9781 -6.4906 48 1 12.2539 -5.0337 -5.7190 49 1 11.3849 -6.5615 -5.2588 50 1 11.1141 -3.7511 -3.9692 51 1 10.9583 -5.3692 -3.1590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089807285.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:43 Heat of formation + Delta-G solvation = -2.325094 kcal Electronic energy + Delta-G solvation = -30982.428332 eV Core-core repulsion = 27077.132780 eV Total energy + Delta-G solvation = -3905.295552 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.95803 -40.94111 -39.23743 -37.59222 -35.49189 -34.61930 -33.77007 -32.79997 -31.18132 -30.87611 -29.21733 -27.23547 -26.58772 -25.37854 -24.33491 -23.25230 -22.86234 -21.87894 -20.61650 -20.56715 -19.08583 -18.44277 -18.01948 -17.88111 -17.43700 -17.10185 -16.59461 -16.19282 -16.01552 -15.73045 -15.36227 -15.29260 -15.18762 -14.57205 -14.47652 -14.28970 -14.08543 -13.94224 -13.71162 -13.37847 -13.23099 -13.05389 -12.97937 -12.77637 -12.68683 -12.60601 -12.48356 -12.43242 -12.17915 -12.05637 -11.97683 -11.73192 -11.62485 -11.51257 -11.06706 -10.97889 -10.91245 -10.72866 -10.61588 -10.33770 -9.49376 -9.03322 -8.23375 -5.51379 1.26964 1.37144 1.47945 1.79753 1.90421 2.39169 2.89064 3.13827 3.21243 3.27097 3.34380 3.49401 3.75111 3.76711 3.82316 3.93891 3.96088 4.01320 4.08461 4.10970 4.21692 4.34132 4.39477 4.43886 4.46100 4.57980 4.58291 4.63665 4.68831 4.75187 4.79549 4.82415 4.85691 4.89458 4.91744 5.01152 5.06822 5.07797 5.17748 5.18665 5.20284 5.23065 5.33745 5.37061 5.40924 5.48164 5.55109 5.65885 6.07206 6.61425 6.67899 6.91753 7.33137 7.46383 8.08920 8.97449 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.026811 B = 0.002932 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.095807 B = 9547.511710 C = 9777.761011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.030 4.030 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.308 1.308 6 H -0.272 1.272 7 C -0.239 4.239 8 H 0.050 0.950 9 N -0.632 5.632 10 C 0.142 3.858 11 C -0.125 4.125 12 H 0.061 0.939 13 C -0.102 4.102 14 H 0.082 0.918 15 C 0.137 3.863 16 C 0.164 3.836 17 H 0.093 0.907 18 C -0.132 4.132 19 C -0.101 4.101 20 C -0.067 4.067 21 H 0.127 0.873 22 C 0.114 3.886 23 N -0.618 5.618 24 C 0.515 3.485 25 O -0.574 6.574 26 C -0.152 4.152 27 C 0.118 3.882 28 O -0.557 6.557 29 C -0.149 4.149 30 C -0.137 4.137 31 C -0.129 4.129 32 H 0.264 0.736 33 H 0.022 0.978 34 H 0.032 0.968 35 H 0.041 0.959 36 H 0.033 0.967 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.122 0.878 42 H 0.069 0.931 43 H 0.132 0.868 44 H 0.117 0.883 45 H 0.385 0.615 46 H 0.078 0.922 47 H 0.113 0.887 48 H 0.083 0.917 49 H 0.067 0.933 50 H 0.101 0.899 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.381 -2.725 -16.351 29.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.225 4.225 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.236 1.236 6 H -0.197 1.197 7 C -0.368 4.368 8 H 0.068 0.932 9 N -0.360 5.360 10 C 0.019 3.981 11 C -0.144 4.144 12 H 0.079 0.921 13 C -0.121 4.121 14 H 0.100 0.900 15 C 0.013 3.987 16 C 0.062 3.938 17 H 0.111 0.889 18 C -0.170 4.170 19 C -0.139 4.139 20 C -0.086 4.086 21 H 0.145 0.855 22 C -0.007 4.007 23 N -0.353 5.353 24 C 0.305 3.695 25 O -0.453 6.453 26 C -0.191 4.191 27 C 0.076 3.924 28 O -0.364 6.364 29 C -0.186 4.186 30 C -0.174 4.174 31 C -0.166 4.166 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.140 0.860 42 H 0.087 0.913 43 H 0.150 0.850 44 H 0.135 0.865 45 H 0.234 0.766 46 H 0.096 0.904 47 H 0.132 0.868 48 H 0.102 0.898 49 H 0.086 0.914 50 H 0.119 0.881 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 24.992 -3.163 -15.517 29.587 hybrid contribution -1.250 0.547 0.765 1.564 sum 23.742 -2.617 -14.752 28.074 Atomic orbital electron populations 1.69997 1.07380 1.27499 1.54720 1.25794 0.95765 1.00882 1.00086 0.85770 0.78005 0.80064 0.78215 1.19251 1.23643 1.19738 1.18501 0.87642 0.94018 1.36657 0.93242 1.45980 1.09153 1.36314 1.44547 1.20400 0.93208 0.92657 0.91845 1.20963 0.94434 0.96367 1.02636 0.92084 1.22498 0.94133 0.97236 0.98271 0.90017 1.21464 0.89397 0.92771 0.95102 1.22013 0.90805 0.97993 0.83032 0.88856 1.22475 0.99938 0.95440 0.99157 1.22461 0.96889 0.98580 0.95926 1.21571 0.92227 0.99153 0.95686 0.85511 1.22620 0.99078 0.86835 0.92215 1.49884 1.42486 1.33617 1.09285 1.21008 0.77948 0.78973 0.91567 1.90723 1.55714 1.41634 1.57265 1.22416 1.02910 1.01720 0.92075 1.22056 0.91567 0.82940 0.95822 1.86570 1.39203 1.38060 1.72575 1.23649 0.96114 1.03479 0.95377 1.22807 0.98503 1.00095 0.96027 1.22995 0.94259 1.01558 0.97787 0.92679 0.96082 0.94982 0.94072 0.94909 0.91721 0.91628 0.90798 0.89876 0.86015 0.91256 0.84976 0.86516 0.76616 0.90375 0.86833 0.89831 0.91409 0.88103 0.93846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.15 13.97 21.65 0.30 -59.85 16 2 C -0.03 -1.75 5.41 84.86 0.46 -1.29 16 3 Si 0.95 46.78 24.66 68.60 1.69 48.47 16 4 H -0.27 -12.14 6.88 99.48 0.68 -11.46 16 5 H -0.31 -15.29 7.11 99.48 0.71 -14.59 16 6 H -0.27 -12.99 7.07 99.48 0.70 -12.29 16 7 C -0.24 -14.03 10.55 84.03 0.89 -13.14 16 8 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 9 N -0.63 -30.52 3.17 -695.62 -2.21 -32.72 16 10 C 0.14 5.74 5.81 84.29 0.49 6.22 16 11 C -0.13 -3.66 2.45 -12.71 -0.03 -3.69 16 12 H 0.06 1.91 4.12 -2.39 -0.01 1.90 16 13 C -0.10 -3.11 2.54 -10.09 -0.03 -3.13 16 14 H 0.08 2.60 6.98 -2.39 -0.02 2.59 16 15 C 0.14 5.42 6.74 85.70 0.58 5.99 16 16 C 0.16 4.31 4.10 44.72 0.18 4.50 16 17 H 0.09 2.79 7.77 -2.39 -0.02 2.77 16 18 C -0.13 -3.05 5.54 31.49 0.17 -2.88 16 19 C -0.10 -1.78 5.54 32.09 0.18 -1.60 16 20 C -0.07 -1.25 4.34 -10.15 -0.04 -1.29 16 21 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 22 C 0.11 1.73 5.22 86.72 0.45 2.19 16 23 N -0.62 -12.89 2.19 -775.78 -1.70 -14.59 16 24 C 0.52 11.44 7.57 87.66 0.66 12.11 16 25 O -0.57 -18.41 14.92 11.32 0.17 -18.24 16 26 C -0.15 -1.90 3.91 29.85 0.12 -1.79 16 27 C 0.12 1.88 0.95 -10.27 -0.01 1.87 16 28 O -0.56 -12.00 12.55 -134.64 -1.69 -13.69 16 29 C -0.15 -1.51 7.49 31.21 0.23 -1.28 16 30 C -0.14 -1.89 8.03 31.22 0.25 -1.64 16 31 C -0.13 -2.32 6.69 31.12 0.21 -2.12 16 32 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 33 H 0.02 0.92 3.49 -2.39 -0.01 0.91 16 34 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.03 1.28 7.73 -2.39 -0.02 1.26 16 37 H 0.06 1.69 6.08 -2.39 -0.01 1.67 16 38 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.20 7.69 -2.39 -0.02 1.18 16 41 H 0.12 0.87 7.00 -2.39 -0.02 0.85 16 42 H 0.07 1.17 7.26 -2.39 -0.02 1.15 16 43 H 0.13 0.88 7.90 -2.39 -0.02 0.86 16 44 H 0.12 0.95 8.06 -2.39 -0.02 0.93 16 45 H 0.39 5.39 9.09 -74.05 -0.67 4.72 16 46 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.11 0.60 8.10 -2.38 -0.02 0.58 16 48 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 50 H 0.10 1.46 8.10 -2.39 -0.02 1.44 16 51 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -79.33 374.43 1.57 -77.76 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.24 Total: 13.84 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 4.76 Total: -0.98 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -3.60 Total: -107.16 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -1.52 Total: -31.93 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.69 Total: 48.47 kcal Total: -79.33 1.57 -77.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089807285.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.433 kcal (2) G-P(sol) polarization free energy of solvation -79.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds