Wall clock time and date at job start Tue Mar 31 2020 19:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99878 * 2 1 4 4 H 1.48503 * 109.47023 * 274.59430 * 3 2 1 5 5 H 1.48499 * 109.47379 * 34.59604 * 3 2 1 6 6 H 1.48498 * 109.46867 * 154.60168 * 3 2 1 7 7 C 1.38809 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99462 * 170.50484 * 7 2 1 9 9 N 1.36936 * 120.00661 * 350.50929 * 7 2 1 10 10 C 1.48803 * 125.80306 * 169.87936 * 9 7 2 11 11 C 1.53062 * 105.64451 * 187.25748 * 10 9 7 12 12 H 1.08999 * 112.08318 * 86.85795 * 11 10 9 13 13 C 1.56050 * 98.65132 * 328.00043 * 11 10 9 14 14 H 1.08998 * 101.09502 * 299.06288 * 13 11 10 15 15 C 1.48505 * 102.84785 * 46.44808 * 13 11 10 16 16 C 1.48981 * 108.87743 * 190.12657 * 13 11 10 17 17 H 1.09001 * 114.63502 * 210.58166 * 16 13 11 18 18 C 1.57218 * 102.07173 * 85.50452 * 16 13 11 19 19 C 1.54018 * 105.71227 * 326.48940 * 18 16 13 20 20 C 1.53565 * 117.26590 * 219.17103 * 11 10 9 21 21 H 1.09000 * 113.19941 * 313.15030 * 20 11 10 22 22 C 1.57731 * 101.72695 * 190.99482 * 20 11 10 23 23 N 1.48355 * 105.38608 * 319.78438 * 22 20 11 24 24 C 1.34777 * 122.53059 * 147.28895 * 23 22 20 25 25 O 1.21282 * 120.00087 * 179.97438 * 24 23 22 26 26 C 1.50697 * 120.00024 * 359.97438 * 24 23 22 27 27 C 1.53000 * 109.47208 * 180.02562 * 26 24 23 28 28 O 1.42905 * 112.84864 * 53.79887 * 27 26 24 29 29 C 1.53779 * 113.61166 * 282.49680 * 27 26 24 30 30 C 1.53781 * 87.08146 * 220.01771 * 29 27 26 31 31 C 1.53779 * 87.08178 * 25.43081 * 30 29 27 32 32 H 0.97005 * 120.00086 * 0.02562 * 1 2 3 33 33 H 1.08998 * 110.21143 * 68.21086 * 10 9 7 34 34 H 1.09004 * 110.21275 * 306.29890 * 10 9 7 35 35 H 1.08995 * 110.91628 * 199.10533 * 15 13 11 36 36 H 1.09007 * 110.94384 * 75.49912 * 15 13 11 37 37 H 1.09001 * 110.19202 * 85.53021 * 18 16 13 38 38 H 1.08991 * 110.19140 * 207.44233 * 18 16 13 39 39 H 1.08998 * 109.42620 * 202.17094 * 19 18 16 40 40 H 1.08995 * 109.39361 * 82.30120 * 19 18 16 41 41 H 1.09001 * 109.40021 * 201.24417 * 22 20 11 42 42 H 1.08993 * 111.19444 * 79.25979 * 22 20 11 43 43 H 1.09006 * 109.46968 * 299.99823 * 26 24 23 44 44 H 1.08999 * 109.47346 * 59.99749 * 26 24 23 45 45 H 0.96699 * 114.00285 * 309.66590 * 28 27 26 46 46 H 1.09003 * 113.61757 * 334.56402 * 29 27 26 47 47 H 1.09000 * 113.61661 * 105.47176 * 29 27 26 48 48 H 1.09007 * 113.61439 * 270.88413 * 30 29 27 49 49 H 1.09002 * 113.69267 * 139.99223 * 30 29 27 50 50 H 1.09000 * 113.62003 * 220.02145 * 31 30 29 51 51 H 1.08999 * 113.61714 * 89.11457 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4005 2.1025 -1.3956 5 1 1.4996 2.6227 0.7949 6 1 3.5929 1.4140 0.6005 7 6 2.0102 -1.2022 0.0005 8 1 3.0791 -1.2086 -0.1538 9 7 1.3396 -2.3799 0.1966 10 6 1.9050 -3.7443 0.0144 11 6 0.7240 -4.7050 0.1730 12 1 0.1940 -4.8615 -0.7665 13 6 -0.1101 -3.8833 1.2047 14 1 0.5851 -3.8314 2.0426 15 6 -0.0875 -2.5135 0.6315 16 6 -1.2202 -4.7357 1.7152 17 1 -2.1208 -4.1893 1.9950 18 6 -0.5228 -5.5158 2.8886 19 6 0.9366 -5.7234 2.4422 20 6 0.9812 -6.0175 0.9275 21 1 1.8878 -6.5285 0.6034 22 6 -0.3390 -6.8255 0.6245 23 7 -1.4375 -5.8323 0.7130 24 6 -2.5469 -5.9089 -0.0485 25 8 -3.4172 -5.0715 0.0620 26 6 -2.7059 -7.0350 -1.0372 27 6 -4.0426 -6.8880 -1.7669 28 8 -4.2079 -5.6024 -2.3688 29 6 -5.2528 -7.3398 -0.9325 30 6 -5.8132 -7.9579 -2.2243 31 6 -4.3591 -8.0571 -2.7145 32 1 -0.4850 0.8401 -0.0004 33 1 2.6584 -3.9445 0.7761 34 1 2.3391 -3.8422 -0.9807 35 1 -0.3344 -1.7704 1.3896 36 1 -0.7629 -2.4365 -0.2207 37 1 -0.5557 -4.9257 3.8045 38 1 -1.0099 -6.4787 3.0420 39 1 1.3665 -6.5636 2.9874 40 1 1.5114 -4.8218 2.6536 41 1 -0.4699 -7.6014 1.3789 42 1 -0.3101 -7.2688 -0.3708 43 1 -1.8916 -7.0007 -1.7610 44 1 -2.6827 -7.9882 -0.5091 45 1 -4.0330 -4.8628 -1.7709 46 1 -5.0056 -8.0761 -0.1678 47 1 -5.8513 -6.5137 -0.5484 48 1 -6.4248 -7.2698 -2.8081 49 1 -6.2908 -8.9263 -2.0752 50 1 -4.2358 -7.8101 -3.7690 51 1 -3.8673 -8.9894 -2.4370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089807286.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:50 Heat of formation + Delta-G solvation = 15.937083 kcal Electronic energy + Delta-G solvation = -31293.391347 eV Core-core repulsion = 27388.887702 eV Total energy + Delta-G solvation = -3904.503645 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.63178 -40.05160 -38.06328 -35.89407 -34.37079 -33.13322 -31.97603 -31.49902 -30.04689 -28.92395 -26.92240 -25.83970 -25.50805 -24.61669 -23.43026 -21.92932 -21.03948 -20.02764 -19.72115 -19.59252 -17.32964 -17.21803 -16.75564 -16.37648 -15.99380 -15.84207 -15.38466 -15.10496 -14.73981 -14.38494 -14.24749 -13.88446 -13.45647 -13.34003 -12.96495 -12.78986 -12.63293 -12.57768 -12.37178 -12.24002 -11.96770 -11.68718 -11.58061 -11.42535 -11.24978 -11.21663 -10.97965 -10.94775 -10.81744 -10.76588 -10.63960 -10.47361 -10.20802 -9.93547 -9.71171 -9.64838 -9.62947 -9.39620 -9.14618 -8.57457 -8.41822 -6.78520 -5.69772 -3.02808 2.70396 2.94622 3.41771 3.47080 3.49388 4.08509 4.30322 4.45009 4.47723 4.50807 4.61102 4.69205 4.72282 4.78272 4.97806 5.00806 5.09054 5.17481 5.26766 5.31692 5.37546 5.40059 5.48127 5.50489 5.51635 5.57808 5.60674 5.63034 5.76055 5.79809 5.89648 5.98360 6.01098 6.03169 6.10395 6.15983 6.18872 6.25647 6.28302 6.29101 6.44965 6.54951 6.67831 6.96946 7.00770 7.48696 7.56543 7.63782 7.81560 7.88784 8.22456 8.30191 9.18341 9.81995 10.51368 11.43491 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014360 B = 0.003593 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.383286 B = 7792.064048 C = 8918.654450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.006 4.006 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.075 0.925 9 N -0.607 5.607 10 C 0.141 3.859 11 C -0.099 4.099 12 H 0.077 0.923 13 C -0.161 4.161 14 H 0.077 0.923 15 C 0.203 3.797 16 C 0.176 3.824 17 H 0.115 0.885 18 C -0.131 4.131 19 C -0.120 4.120 20 C -0.089 4.089 21 H 0.097 0.903 22 C 0.110 3.890 23 N -0.609 5.609 24 C 0.521 3.479 25 O -0.544 6.544 26 C -0.162 4.162 27 C 0.130 3.870 28 O -0.549 6.549 29 C -0.161 4.161 30 C -0.135 4.135 31 C -0.129 4.129 32 H 0.253 0.747 33 H 0.022 0.978 34 H 0.026 0.974 35 H 0.064 0.936 36 H 0.026 0.974 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.394 0.606 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.083 0.917 49 H 0.065 0.935 50 H 0.076 0.924 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.639 -21.117 2.460 21.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.359 4.359 8 H 0.093 0.907 9 N -0.335 5.335 10 C 0.016 3.984 11 C -0.118 4.118 12 H 0.095 0.905 13 C -0.181 4.181 14 H 0.095 0.905 15 C 0.079 3.921 16 C 0.074 3.926 17 H 0.133 0.867 18 C -0.169 4.169 19 C -0.157 4.157 20 C -0.108 4.108 21 H 0.115 0.885 22 C -0.013 4.013 23 N -0.343 5.343 24 C 0.310 3.690 25 O -0.424 6.424 26 C -0.202 4.202 27 C 0.088 3.912 28 O -0.362 6.362 29 C -0.199 4.199 30 C -0.172 4.172 31 C -0.167 4.167 32 H 0.063 0.937 33 H 0.040 0.960 34 H 0.044 0.956 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.249 0.751 46 H 0.099 0.901 47 H 0.094 0.906 48 H 0.102 0.898 49 H 0.084 0.916 50 H 0.095 0.905 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.268 -20.781 2.017 21.533 hybrid contribution 0.809 1.188 0.387 1.489 sum -4.459 -19.593 2.404 20.237 Atomic orbital electron populations 1.69974 1.04893 1.25127 1.56109 1.24819 0.95585 0.97691 1.02236 0.86169 0.78698 0.83780 0.77495 1.21670 1.21634 1.20696 1.18998 0.90963 0.82836 1.43076 0.90749 1.45528 1.08943 0.99468 1.79530 1.21235 0.93545 0.86098 0.97559 1.22485 0.98152 0.93246 0.97924 0.90510 1.22060 0.97076 0.98186 1.00805 0.90491 1.19982 0.85604 0.89342 0.97172 1.21775 0.97865 0.86751 0.86204 0.86705 1.23150 0.95518 1.00263 0.98001 1.22107 0.96736 1.01884 0.94944 1.22739 0.96344 0.96506 0.95222 0.88533 1.22918 0.86591 0.90548 1.01245 1.49663 1.17928 1.27499 1.39216 1.20473 0.81315 0.86409 0.80810 1.90556 1.41216 1.42256 1.68367 1.22368 1.00751 0.98636 0.98443 1.21747 0.90916 0.85500 0.93027 1.86317 1.92228 1.14798 1.42856 1.23560 0.98483 1.01003 0.96817 1.22738 0.96156 1.00762 0.97565 1.23057 0.96884 0.96532 1.00178 0.93720 0.95999 0.95611 0.91749 0.95556 0.90621 0.91382 0.92130 0.90198 0.91512 0.90373 0.88300 0.88293 0.75070 0.90096 0.90570 0.89849 0.91611 0.90529 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.48 10.77 55.49 0.60 -26.88 16 2 C -0.01 -0.18 5.42 -17.43 -0.09 -0.27 16 3 Si 0.91 22.38 29.56 -169.99 -5.03 17.35 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.51 10.27 -15.06 -0.15 -6.66 16 8 H 0.07 2.04 7.85 -52.49 -0.41 1.63 16 9 N -0.61 -15.59 3.48 -171.13 -0.59 -16.18 16 10 C 0.14 2.87 6.71 -2.74 -0.02 2.85 16 11 C -0.10 -1.64 2.65 -88.66 -0.24 -1.87 16 12 H 0.08 1.39 7.54 -51.93 -0.39 1.00 16 13 C -0.16 -2.94 2.52 -93.15 -0.23 -3.17 16 14 H 0.08 1.41 3.99 -51.93 -0.21 1.20 16 15 C 0.20 4.97 5.23 -4.40 -0.02 4.94 16 16 C 0.18 2.65 4.46 -65.58 -0.29 2.35 16 17 H 0.12 1.90 7.72 -51.93 -0.40 1.50 16 18 C -0.13 -1.53 5.59 -23.91 -0.13 -1.66 16 19 C -0.12 -1.36 5.34 -25.49 -0.14 -1.50 16 20 C -0.09 -1.04 4.09 -87.03 -0.36 -1.39 16 21 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 22 C 0.11 1.10 5.39 -0.43 0.00 1.10 16 23 N -0.61 -8.07 2.13 -158.46 -0.34 -8.40 16 24 C 0.52 7.42 7.54 -10.99 -0.08 7.34 16 25 O -0.54 -9.59 13.49 -14.26 -0.19 -9.78 16 26 C -0.16 -1.76 4.02 -27.88 -0.11 -1.87 16 27 C 0.13 1.58 1.10 -89.81 -0.10 1.48 16 28 O -0.55 -8.62 13.39 -55.04 -0.74 -9.35 16 29 C -0.16 -1.78 7.16 -25.92 -0.19 -1.97 16 30 C -0.13 -1.32 8.02 -25.92 -0.21 -1.52 16 31 C -0.13 -1.25 7.47 -25.92 -0.19 -1.44 16 32 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.02 0.43 7.94 -51.93 -0.41 0.02 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 1.75 7.17 -51.93 -0.37 1.38 16 36 H 0.03 0.73 8.06 -51.92 -0.42 0.31 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.70 7.20 -51.93 -0.37 0.32 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 1.09 6.16 -51.93 -0.32 0.77 16 41 H 0.07 0.55 7.26 -51.93 -0.38 0.17 16 42 H 0.08 0.67 6.77 -51.93 -0.35 0.32 16 43 H 0.10 1.02 7.60 -51.93 -0.39 0.63 16 44 H 0.10 0.80 8.05 -51.93 -0.42 0.38 16 45 H 0.39 6.61 6.20 45.56 0.28 6.89 16 46 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 47 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 51 H 0.09 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 376.21 15.07 5.67 5.67 Total: -1.00 -32.75 376.21 -11.10 -43.86 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -7.92 Total: 6.98 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -2.56 Total: -3.27 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.34 Total: -51.46 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.93 Total: -19.13 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.75 -11.10 -43.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089807286.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.797 kcal (2) G-P(sol) polarization free energy of solvation -32.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds