Wall clock time and date at job start Tue Mar 31 2020 19:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99878 * 2 1 4 4 H 1.48503 * 109.47023 * 274.59430 * 3 2 1 5 5 H 1.48499 * 109.47379 * 34.59604 * 3 2 1 6 6 H 1.48498 * 109.46867 * 154.60168 * 3 2 1 7 7 C 1.38809 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99462 * 170.50484 * 7 2 1 9 9 N 1.36936 * 120.00661 * 350.50929 * 7 2 1 10 10 C 1.48803 * 125.80306 * 169.87936 * 9 7 2 11 11 C 1.53062 * 105.64451 * 187.25748 * 10 9 7 12 12 H 1.08999 * 112.08318 * 86.85795 * 11 10 9 13 13 C 1.56050 * 98.65132 * 328.00043 * 11 10 9 14 14 H 1.08998 * 101.09502 * 299.06288 * 13 11 10 15 15 C 1.48505 * 102.84785 * 46.44808 * 13 11 10 16 16 C 1.48981 * 108.87743 * 190.12657 * 13 11 10 17 17 H 1.09001 * 114.63502 * 210.58166 * 16 13 11 18 18 C 1.57218 * 102.07173 * 85.50452 * 16 13 11 19 19 C 1.54018 * 105.71227 * 326.48940 * 18 16 13 20 20 C 1.53565 * 117.26590 * 219.17103 * 11 10 9 21 21 H 1.09000 * 113.19941 * 313.15030 * 20 11 10 22 22 C 1.57731 * 101.72695 * 190.99482 * 20 11 10 23 23 N 1.48355 * 105.38608 * 319.78438 * 22 20 11 24 24 C 1.34777 * 122.53059 * 147.28895 * 23 22 20 25 25 O 1.21282 * 120.00087 * 179.97438 * 24 23 22 26 26 C 1.50697 * 120.00024 * 359.97438 * 24 23 22 27 27 C 1.53000 * 109.47208 * 180.02562 * 26 24 23 28 28 O 1.42905 * 112.84864 * 53.79887 * 27 26 24 29 29 C 1.53779 * 113.61166 * 282.49680 * 27 26 24 30 30 C 1.53781 * 87.08146 * 220.01771 * 29 27 26 31 31 C 1.53779 * 87.08178 * 25.43081 * 30 29 27 32 32 H 0.97005 * 120.00086 * 0.02562 * 1 2 3 33 33 H 1.08998 * 110.21143 * 68.21086 * 10 9 7 34 34 H 1.09004 * 110.21275 * 306.29890 * 10 9 7 35 35 H 1.08995 * 110.91628 * 199.10533 * 15 13 11 36 36 H 1.09007 * 110.94384 * 75.49912 * 15 13 11 37 37 H 1.09001 * 110.19202 * 85.53021 * 18 16 13 38 38 H 1.08991 * 110.19140 * 207.44233 * 18 16 13 39 39 H 1.08998 * 109.42620 * 202.17094 * 19 18 16 40 40 H 1.08995 * 109.39361 * 82.30120 * 19 18 16 41 41 H 1.09001 * 109.40021 * 201.24417 * 22 20 11 42 42 H 1.08993 * 111.19444 * 79.25979 * 22 20 11 43 43 H 1.09006 * 109.46968 * 299.99823 * 26 24 23 44 44 H 1.08999 * 109.47346 * 59.99749 * 26 24 23 45 45 H 0.96699 * 114.00285 * 309.66590 * 28 27 26 46 46 H 1.09003 * 113.61757 * 334.56402 * 29 27 26 47 47 H 1.09000 * 113.61661 * 105.47176 * 29 27 26 48 48 H 1.09007 * 113.61439 * 270.88413 * 30 29 27 49 49 H 1.09002 * 113.69267 * 139.99223 * 30 29 27 50 50 H 1.09000 * 113.62003 * 220.02145 * 31 30 29 51 51 H 1.08999 * 113.61714 * 89.11457 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4005 2.1025 -1.3956 5 1 1.4996 2.6227 0.7949 6 1 3.5929 1.4140 0.6005 7 6 2.0102 -1.2022 0.0005 8 1 3.0791 -1.2086 -0.1538 9 7 1.3396 -2.3799 0.1966 10 6 1.9050 -3.7443 0.0144 11 6 0.7240 -4.7050 0.1730 12 1 0.1940 -4.8615 -0.7665 13 6 -0.1101 -3.8833 1.2047 14 1 0.5851 -3.8314 2.0426 15 6 -0.0875 -2.5135 0.6315 16 6 -1.2202 -4.7357 1.7152 17 1 -2.1208 -4.1893 1.9950 18 6 -0.5228 -5.5158 2.8886 19 6 0.9366 -5.7234 2.4422 20 6 0.9812 -6.0175 0.9275 21 1 1.8878 -6.5285 0.6034 22 6 -0.3390 -6.8255 0.6245 23 7 -1.4375 -5.8323 0.7130 24 6 -2.5469 -5.9089 -0.0485 25 8 -3.4172 -5.0715 0.0620 26 6 -2.7059 -7.0350 -1.0372 27 6 -4.0426 -6.8880 -1.7669 28 8 -4.2079 -5.6024 -2.3688 29 6 -5.2528 -7.3398 -0.9325 30 6 -5.8132 -7.9579 -2.2243 31 6 -4.3591 -8.0571 -2.7145 32 1 -0.4850 0.8401 -0.0004 33 1 2.6584 -3.9445 0.7761 34 1 2.3391 -3.8422 -0.9807 35 1 -0.3344 -1.7704 1.3896 36 1 -0.7629 -2.4365 -0.2207 37 1 -0.5557 -4.9257 3.8045 38 1 -1.0099 -6.4787 3.0420 39 1 1.3665 -6.5636 2.9874 40 1 1.5114 -4.8218 2.6536 41 1 -0.4699 -7.6014 1.3789 42 1 -0.3101 -7.2688 -0.3708 43 1 -1.8916 -7.0007 -1.7610 44 1 -2.6827 -7.9882 -0.5091 45 1 -4.0330 -4.8628 -1.7709 46 1 -5.0056 -8.0761 -0.1678 47 1 -5.8513 -6.5137 -0.5484 48 1 -6.4248 -7.2698 -2.8081 49 1 -6.2908 -8.9263 -2.0752 50 1 -4.2358 -7.8101 -3.7690 51 1 -3.8673 -8.9894 -2.4370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089807286.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:48 Heat of formation + Delta-G solvation = -5.009174 kcal Electronic energy + Delta-G solvation = -31294.299645 eV Core-core repulsion = 27388.887702 eV Total energy + Delta-G solvation = -3905.411943 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.81527 -41.04412 -39.17130 -37.49846 -35.44732 -34.56745 -33.61546 -32.68905 -30.95907 -30.70426 -28.48300 -27.01137 -26.61595 -25.94744 -24.35433 -23.37252 -22.30875 -21.58730 -20.81656 -20.53035 -18.87253 -18.46027 -18.21052 -17.52547 -17.22545 -17.00352 -16.58120 -16.25590 -16.09615 -15.73456 -15.42593 -15.05895 -14.96313 -14.49575 -14.26658 -14.26471 -13.94349 -13.70963 -13.49938 -13.26014 -13.16262 -13.08048 -12.89112 -12.75814 -12.54483 -12.48309 -12.42133 -12.21721 -12.11827 -12.01188 -11.82479 -11.77575 -11.75072 -11.40831 -11.30227 -10.96892 -10.87806 -10.67138 -10.57617 -10.30913 -9.53465 -8.92506 -7.90704 -5.26470 1.41151 1.43436 1.53291 1.64894 1.94846 2.45337 3.16590 3.24795 3.34511 3.41281 3.48689 3.60623 3.66217 3.68478 3.76553 3.93248 4.06782 4.13520 4.19560 4.26364 4.34831 4.39230 4.43010 4.48669 4.55663 4.63573 4.67412 4.73456 4.79306 4.81179 4.86246 4.88885 4.91985 5.02350 5.03561 5.06174 5.10278 5.16354 5.23350 5.25568 5.34198 5.36345 5.40422 5.44828 5.47503 5.55806 5.60407 5.76711 6.10223 6.52825 6.72435 6.98433 7.23879 7.68077 8.38747 9.21729 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014360 B = 0.003593 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.383286 B = 7792.064048 C = 8918.654450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.264 1.264 7 C -0.243 4.243 8 H 0.082 0.918 9 N -0.631 5.631 10 C 0.135 3.865 11 C -0.083 4.083 12 H 0.059 0.941 13 C -0.157 4.157 14 H 0.082 0.918 15 C 0.215 3.785 16 C 0.165 3.835 17 H 0.085 0.915 18 C -0.116 4.116 19 C -0.117 4.117 20 C -0.077 4.077 21 H 0.130 0.870 22 C 0.108 3.892 23 N -0.609 5.609 24 C 0.509 3.491 25 O -0.592 6.592 26 C -0.149 4.149 27 C 0.105 3.895 28 O -0.575 6.575 29 C -0.160 4.160 30 C -0.133 4.133 31 C -0.117 4.117 32 H 0.246 0.754 33 H 0.041 0.959 34 H 0.021 0.979 35 H 0.022 0.978 36 H -0.027 1.027 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.053 0.947 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.142 0.858 45 H 0.382 0.618 46 H 0.106 0.894 47 H 0.044 0.956 48 H 0.062 0.938 49 H 0.092 0.908 50 H 0.066 0.934 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.591 -25.996 3.408 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.188 1.188 7 C -0.373 4.373 8 H 0.100 0.900 9 N -0.359 5.359 10 C 0.011 3.989 11 C -0.103 4.103 12 H 0.077 0.923 13 C -0.176 4.176 14 H 0.099 0.901 15 C 0.091 3.909 16 C 0.062 3.938 17 H 0.103 0.897 18 C -0.154 4.154 19 C -0.154 4.154 20 C -0.096 4.096 21 H 0.148 0.852 22 C -0.013 4.013 23 N -0.341 5.341 24 C 0.299 3.701 25 O -0.475 6.475 26 C -0.189 4.189 27 C 0.063 3.937 28 O -0.387 6.387 29 C -0.198 4.198 30 C -0.171 4.171 31 C -0.154 4.154 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.039 0.961 35 H 0.040 0.960 36 H -0.009 1.009 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.071 0.929 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.127 0.873 44 H 0.160 0.840 45 H 0.236 0.764 46 H 0.124 0.876 47 H 0.063 0.937 48 H 0.081 0.919 49 H 0.110 0.890 50 H 0.085 0.915 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.168 -25.731 2.958 26.094 hybrid contribution 0.170 2.758 0.050 2.764 sum -2.998 -22.973 3.008 23.362 Atomic orbital electron populations 1.70226 1.06675 1.25329 1.57774 1.25737 0.96416 1.01390 1.02662 0.85062 0.77928 0.79022 0.77307 1.21453 1.22059 1.18826 1.19455 0.91599 0.84237 1.41966 0.90023 1.45907 1.09220 1.01152 1.79598 1.21465 0.95330 0.84439 0.97622 1.22433 0.95319 0.95331 0.97200 0.92306 1.21857 0.99334 0.95210 1.01240 0.90064 1.19582 0.84597 0.92609 0.94132 1.21655 0.96007 0.87439 0.88658 0.89651 1.23087 0.95558 1.00793 0.95949 1.22102 0.95910 1.02282 0.95086 1.22828 0.98884 0.93385 0.94471 0.85237 1.23269 0.83805 0.89989 1.04192 1.49764 1.18673 1.27363 1.38336 1.21233 0.80975 0.86825 0.81032 1.90547 1.43115 1.44202 1.69606 1.22383 1.00055 0.98799 0.97646 1.22247 0.92258 0.84558 0.94593 1.86291 1.92590 1.16234 1.43549 1.23586 0.97815 1.00628 0.97774 1.22720 0.96509 1.01421 0.96411 1.23132 0.96560 0.96628 0.99050 0.94543 0.94126 0.96127 0.95996 1.00919 0.90557 0.88454 0.87994 0.92892 0.87423 0.87945 0.87297 0.83987 0.76371 0.87605 0.93664 0.91886 0.88968 0.91495 0.85316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.30 10.77 21.65 0.23 -61.07 16 2 C -0.07 -4.13 5.42 84.86 0.46 -3.67 16 3 Si 0.98 47.69 29.56 68.60 2.03 49.72 16 4 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 5 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.24 -14.27 10.27 84.03 0.86 -13.41 16 8 H 0.08 4.54 7.85 -2.91 -0.02 4.52 16 9 N -0.63 -34.01 3.48 -695.34 -2.42 -36.43 16 10 C 0.14 5.52 6.71 85.96 0.58 6.10 16 11 C -0.08 -2.70 2.65 -9.53 -0.03 -2.72 16 12 H 0.06 2.12 7.54 -2.39 -0.02 2.10 16 13 C -0.16 -5.92 2.52 -12.43 -0.03 -5.95 16 14 H 0.08 3.01 3.99 -2.39 -0.01 3.00 16 15 C 0.22 11.48 5.23 84.32 0.44 11.92 16 16 C 0.17 5.01 4.46 44.49 0.20 5.21 16 17 H 0.09 3.07 7.72 -2.39 -0.02 3.05 16 18 C -0.12 -2.33 5.59 32.42 0.18 -2.15 16 19 C -0.12 -2.13 5.34 31.40 0.17 -1.97 16 20 C -0.08 -1.44 4.09 -8.47 -0.03 -1.47 16 21 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 22 C 0.11 1.58 5.39 87.70 0.47 2.05 16 23 N -0.61 -14.91 2.13 -773.65 -1.65 -16.56 16 24 C 0.51 14.16 7.54 87.66 0.66 14.82 16 25 O -0.59 -22.17 13.49 15.91 0.21 -21.96 16 26 C -0.15 -2.80 4.02 29.85 0.12 -2.68 16 27 C 0.10 2.43 1.10 -10.27 -0.01 2.42 16 28 O -0.57 -19.12 13.39 -130.04 -1.74 -20.86 16 29 C -0.16 -3.38 7.16 31.12 0.22 -3.16 16 30 C -0.13 -2.38 8.02 31.12 0.25 -2.13 16 31 C -0.12 -1.94 7.47 31.12 0.23 -1.70 16 32 H 0.25 15.40 8.31 -92.70 -0.77 14.63 16 33 H 0.04 1.53 7.94 -2.39 -0.02 1.51 16 34 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.02 1.31 7.17 -2.39 -0.02 1.29 16 36 H -0.03 -1.71 8.06 -2.38 -0.02 -1.72 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.10 1.45 7.20 -2.39 -0.02 1.43 16 39 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.05 1.30 6.16 -2.39 -0.01 1.28 16 41 H 0.11 0.87 7.26 -2.39 -0.02 0.85 16 42 H 0.10 1.09 6.77 -2.39 -0.02 1.07 16 43 H 0.11 1.86 7.60 -2.38 -0.02 1.84 16 44 H 0.14 1.43 8.05 -2.39 -0.02 1.41 16 45 H 0.38 14.23 6.20 -74.06 -0.46 13.77 16 46 H 0.11 1.67 8.04 -2.39 -0.02 1.65 16 47 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 49 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.13 1.18 8.10 -2.39 -0.02 1.16 16 Total: -1.00 -82.60 376.21 1.88 -80.72 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.47 Total: 24.93 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 4.74 Total: 1.50 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -3.83 Total: -114.05 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -1.53 Total: -42.82 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -82.60 1.88 -80.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089807286.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.708 kcal (2) G-P(sol) polarization free energy of solvation -82.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds