Wall clock time and date at job start Tue Mar 31 2020 19:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86809 * 120.00013 * 2 1 4 4 H 1.48503 * 109.47000 * 240.00448 * 3 2 1 5 5 H 1.48500 * 109.46953 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46925 * 120.00191 * 3 2 1 7 7 C 1.38804 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00638 * 163.06278 * 7 2 1 9 9 N 1.36941 * 120.00063 * 343.05463 * 7 2 1 10 10 C 1.46925 * 120.63908 * 331.85201 * 9 7 2 11 11 C 1.53198 * 108.78757 * 233.64146 * 10 9 7 12 12 H 1.08996 * 109.49684 * 65.30241 * 11 10 9 13 13 N 1.46506 * 109.49505 * 185.36765 * 11 10 9 14 14 C 1.34770 * 119.99816 * 274.93658 * 13 11 10 15 15 O 1.21280 * 120.00266 * 359.97438 * 14 13 11 16 16 C 1.50706 * 120.00113 * 180.02562 * 14 13 11 17 17 H 1.09000 * 115.54499 * 34.32762 * 16 14 13 18 18 C 1.53002 * 117.49904 * 248.62283 * 16 14 13 19 19 C 1.52991 * 117.49904 * 179.97438 * 16 14 13 20 20 C 1.52999 * 138.58532 * 238.37991 * 19 16 14 21 21 C 1.52994 * 138.59100 * 336.59173 * 19 16 14 22 22 C 1.53052 * 109.34029 * 305.33291 * 11 10 9 23 23 C 1.52928 * 109.55935 * 61.17736 * 22 11 10 24 24 C 1.53074 * 109.56373 * 58.97971 * 23 22 11 25 25 C 1.53106 * 109.16315 * 176.89231 * 24 23 22 26 26 O 1.42896 * 109.40909 * 302.51548 * 25 24 23 27 27 C 1.42912 * 114.13499 * 61.17184 * 26 25 24 28 28 C 1.53093 * 109.59476 * 178.77875 * 23 22 11 29 29 C 1.46942 * 120.64393 * 151.82321 * 9 7 2 30 30 H 0.97002 * 119.99423 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.58613 * 113.85259 * 10 9 7 32 32 H 1.08993 * 109.58998 * 353.43332 * 10 9 7 33 33 H 0.97001 * 119.99971 * 94.93284 * 13 11 10 34 34 H 1.08993 * 117.50062 * 145.02045 * 18 16 14 35 35 H 1.08998 * 117.49868 * 359.97438 * 18 16 14 36 36 H 1.08992 * 117.49842 * 23.40580 * 20 19 16 37 37 H 1.09006 * 117.49450 * 238.38567 * 20 19 16 38 38 H 1.09005 * 117.49721 * 121.61907 * 21 19 16 39 39 H 1.08991 * 117.51960 * 336.59327 * 21 19 16 40 40 H 1.09001 * 109.45348 * 181.23493 * 22 11 10 41 41 H 1.09002 * 109.45865 * 301.18037 * 22 11 10 42 42 H 1.09001 * 109.52465 * 296.79882 * 24 23 22 43 43 H 1.09004 * 109.52532 * 56.98805 * 24 23 22 44 44 H 1.09001 * 109.48598 * 182.53826 * 25 24 23 45 45 H 1.09001 * 109.48458 * 62.49182 * 25 24 23 46 46 H 1.08996 * 109.48663 * 178.83769 * 27 26 25 47 47 H 1.09004 * 109.49237 * 58.80684 * 27 26 25 48 48 H 1.09003 * 109.51916 * 303.02127 * 28 23 22 49 49 H 1.08998 * 109.52152 * 63.20773 * 28 23 22 50 50 H 1.09000 * 109.58340 * 246.31604 * 29 9 7 51 51 H 1.09003 * 109.58300 * 6.59252 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0551 -1.2223 -0.2730 9 7 1.3702 -2.3624 0.3446 10 6 0.2263 -2.3409 1.2665 11 6 0.4984 -3.3198 2.4132 12 1 1.3481 -2.9677 2.9981 13 7 -0.6847 -3.4068 3.2728 14 6 -0.8689 -2.5066 4.2588 15 8 -0.0550 -1.6249 4.4348 16 6 -2.0856 -2.5964 5.1435 17 1 -2.4366 -3.6056 5.3592 18 6 -3.1392 -1.4951 5.0097 19 6 -2.2372 -1.5456 6.2451 20 6 -2.3730 -1.4911 7.7680 21 6 -1.3513 -0.6001 7.0587 22 6 0.8131 -4.7019 1.8359 23 6 2.0646 -4.6184 0.9610 24 6 3.2427 -4.1142 1.7983 25 6 4.5069 -4.1080 0.9346 26 8 4.7428 -5.4233 0.4286 27 6 3.6946 -5.9266 -0.4022 28 6 2.3978 -6.0064 0.4077 29 6 1.8136 -3.6530 -0.2004 30 1 -0.4849 0.8401 0.0004 31 1 -0.6766 -2.6422 0.7355 32 1 0.0987 -1.3354 1.6671 33 1 -1.3355 -4.1122 3.1323 34 1 -4.1836 -1.7795 5.1372 35 1 -2.9522 -0.7054 4.2821 36 1 -1.9921 -2.3385 8.3379 37 1 -3.2618 -1.0105 8.1772 38 1 -1.5678 0.4667 7.0012 39 1 -0.2982 -0.8611 7.1623 40 1 0.9855 -5.4050 2.6508 41 1 -0.0284 -5.0440 1.2335 42 1 3.0351 -3.1027 2.1474 43 1 3.3897 -4.7730 2.6543 44 1 5.3580 -3.7926 1.5382 45 1 4.3752 -3.4166 0.1023 46 1 3.9607 -6.9207 -0.7613 47 1 3.5519 -5.2592 -1.2521 48 1 2.5264 -6.7064 1.2333 49 1 1.5865 -6.3462 -0.2361 50 1 1.0405 -4.0592 -0.8526 51 1 2.7339 -3.5133 -0.7676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089957494.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:00 Heat of formation + Delta-G solvation = -2.882791 kcal Electronic energy + Delta-G solvation = -30888.247621 eV Core-core repulsion = 26982.927885 eV Total energy + Delta-G solvation = -3905.319736 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.18599 -39.46234 -37.60252 -36.60827 -34.07808 -33.74600 -32.57631 -31.02176 -30.58576 -29.62820 -26.86223 -25.41486 -24.33874 -23.36979 -22.73421 -22.37301 -21.79740 -20.53770 -19.89379 -19.01399 -17.87180 -16.90896 -16.61046 -15.90798 -15.63534 -15.45522 -15.02110 -14.95264 -14.69323 -14.49764 -14.26002 -14.06866 -13.95080 -13.63077 -13.40361 -12.83426 -12.39859 -12.35976 -12.25147 -12.04453 -11.79454 -11.65628 -11.46516 -11.19392 -11.08755 -10.91269 -10.75066 -10.68889 -10.44333 -10.25987 -10.16558 -10.14510 -10.05849 -10.03869 -9.95679 -9.71926 -9.37588 -9.33211 -8.93501 -8.50493 -8.42954 -6.67521 -5.78212 -3.22131 2.87337 3.33063 3.41422 3.47055 3.49267 3.79909 3.94675 4.19920 4.34271 4.50756 4.82855 4.85886 4.98087 5.09958 5.17195 5.20986 5.37805 5.42136 5.46789 5.51470 5.55817 5.58382 5.62935 5.64202 5.67554 5.70008 5.72316 5.81855 5.88456 5.95284 5.97640 6.04053 6.05100 6.12040 6.18153 6.19675 6.23275 6.30233 6.45974 6.53084 6.68528 6.74039 6.79347 6.86697 6.98504 7.28050 7.53025 7.70553 7.80527 7.99040 8.44837 8.72917 9.19952 9.83742 10.38573 11.29514 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009462 B = 0.004491 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.633695 B = 6233.417694 C = 8161.134346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.010 3.990 3 Si 0.900 3.100 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.258 4.258 8 H 0.065 0.935 9 N -0.582 5.582 10 C 0.167 3.833 11 C 0.116 3.884 12 H 0.085 0.915 13 N -0.719 5.719 14 C 0.536 3.464 15 O -0.527 6.527 16 C -0.139 4.139 17 H 0.119 0.881 18 C -0.101 4.101 19 C -0.201 4.201 20 C -0.133 4.133 21 C -0.113 4.113 22 C -0.104 4.104 23 C -0.071 4.071 24 C -0.136 4.136 25 C 0.061 3.939 26 O -0.391 6.391 27 C 0.061 3.939 28 C -0.140 4.140 29 C 0.152 3.848 30 H 0.254 0.746 31 H 0.016 0.984 32 H 0.095 0.905 33 H 0.392 0.608 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.090 0.910 43 H 0.054 0.946 44 H 0.085 0.915 45 H 0.060 0.940 46 H 0.085 0.915 47 H 0.053 0.947 48 H 0.064 0.936 49 H 0.069 0.931 50 H 0.018 0.982 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.696 -10.718 8.532 14.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.189 4.189 3 Si 0.729 3.271 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.387 4.387 8 H 0.083 0.917 9 N -0.304 5.304 10 C 0.040 3.960 11 C 0.011 3.989 12 H 0.103 0.897 13 N -0.369 5.369 14 C 0.321 3.679 15 O -0.402 6.402 16 C -0.160 4.160 17 H 0.137 0.863 18 C -0.138 4.138 19 C -0.201 4.201 20 C -0.169 4.169 21 C -0.149 4.149 22 C -0.142 4.142 23 C -0.074 4.074 24 C -0.173 4.173 25 C -0.016 4.016 26 O -0.310 6.310 27 C -0.015 4.015 28 C -0.179 4.179 29 C 0.025 3.975 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.113 0.887 33 H 0.224 0.776 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.073 0.927 44 H 0.104 0.896 45 H 0.078 0.922 46 H 0.103 0.897 47 H 0.071 0.929 48 H 0.083 0.917 49 H 0.088 0.912 50 H 0.036 0.964 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.029 -9.995 8.663 13.569 hybrid contribution -0.353 0.509 -0.183 0.646 sum -3.382 -9.486 8.479 13.165 Atomic orbital electron populations 1.70003 1.05319 1.25650 1.53081 1.25011 0.95219 0.98399 1.00303 0.86415 0.79046 0.83477 0.78115 1.20886 1.21651 1.20855 1.19037 0.92450 0.84649 1.42555 0.91748 1.43890 1.35878 1.01441 1.49228 1.21096 0.88673 0.98871 0.87322 1.21999 0.87232 0.96574 0.93081 0.89745 1.45999 1.26122 1.31609 1.33186 1.19551 0.86200 0.81709 0.80405 1.90729 1.44966 1.33922 1.70592 1.21996 0.98037 0.96312 0.99666 0.86334 1.22675 0.94718 0.99086 0.97322 1.21126 1.05785 1.03408 0.89816 1.22741 1.01398 1.02252 0.90558 1.22566 0.96641 0.96272 0.99460 1.21679 0.97721 0.96362 0.98409 1.20988 0.94196 0.94869 0.97346 1.22123 0.94353 1.03090 0.97782 1.22634 0.97632 0.83746 0.97552 1.87839 1.43190 1.32596 1.67387 1.22534 0.87351 0.98924 0.92733 1.22172 0.98002 0.97349 1.00328 1.21066 0.97708 0.86690 0.92014 0.93612 0.96595 0.88722 0.77551 0.87868 0.87744 0.88793 0.88581 0.88622 0.88230 0.92963 0.92175 0.89177 0.92682 0.89643 0.92181 0.89716 0.92870 0.91748 0.91243 0.96433 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.20 11.20 55.49 0.62 -25.58 16 2 C 0.01 0.28 4.92 -17.43 -0.09 0.20 16 3 Si 0.90 22.22 29.59 -169.99 -5.03 17.19 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.26 -6.93 9.58 -15.06 -0.14 -7.08 16 8 H 0.06 1.70 7.89 -52.49 -0.41 1.28 16 9 N -0.58 -14.02 2.40 -172.37 -0.41 -14.43 16 10 C 0.17 3.95 4.88 -3.71 -0.02 3.93 16 11 C 0.12 2.20 2.27 -67.80 -0.15 2.05 16 12 H 0.08 1.83 5.87 -51.93 -0.30 1.52 16 13 N -0.72 -11.61 5.08 -53.68 -0.27 -11.88 16 14 C 0.54 9.43 7.58 -10.99 -0.08 9.35 16 15 O -0.53 -11.71 15.91 5.56 0.09 -11.63 16 16 C -0.14 -1.86 6.19 -91.77 -0.57 -2.43 16 17 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 18 C -0.10 -1.27 10.24 -26.71 -0.27 -1.54 16 19 C -0.20 -2.65 5.06 -154.49 -0.78 -3.43 16 20 C -0.13 -1.38 10.53 -26.73 -0.28 -1.67 16 21 C -0.11 -1.48 10.16 -26.73 -0.27 -1.75 16 22 C -0.10 -1.63 4.19 -26.74 -0.11 -1.75 16 23 C -0.07 -1.17 0.52 -154.41 -0.08 -1.25 16 24 C -0.14 -2.30 4.37 -26.64 -0.12 -2.42 16 25 C 0.06 0.98 6.57 37.21 0.24 1.23 16 26 O -0.39 -6.20 10.76 -35.23 -0.38 -6.57 16 27 C 0.06 0.84 6.57 37.21 0.24 1.08 16 28 C -0.14 -1.90 4.92 -26.63 -0.13 -2.03 16 29 C 0.15 3.01 4.60 -3.75 -0.02 2.99 16 30 H 0.25 7.27 8.31 -40.82 -0.34 6.94 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 2.67 6.06 -51.93 -0.31 2.35 16 33 H 0.39 4.96 8.60 -40.82 -0.35 4.61 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.09 1.79 6.11 -51.93 -0.32 1.47 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 45 H 0.06 1.05 6.48 -51.93 -0.34 0.71 16 46 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.05 0.74 6.74 -51.93 -0.35 0.39 16 48 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.06 1.14 4.85 -51.93 -0.25 0.89 16 LS Contribution 390.56 15.07 5.89 5.89 Total: -1.00 -32.04 390.56 -10.67 -42.71 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -8.54 Total: 8.83 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -2.63 Total: -4.51 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.06 Total: -51.90 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.29 Total: -18.20 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.04 -10.67 -42.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089957494.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.827 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds