Wall clock time and date at job start Tue Mar 31 2020 19:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86809 * 120.00013 * 2 1 4 4 H 1.48503 * 109.47000 * 240.00448 * 3 2 1 5 5 H 1.48500 * 109.46953 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46925 * 120.00191 * 3 2 1 7 7 C 1.38804 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00638 * 163.06278 * 7 2 1 9 9 N 1.36941 * 120.00063 * 343.05463 * 7 2 1 10 10 C 1.46925 * 120.63908 * 331.85201 * 9 7 2 11 11 C 1.53198 * 108.78757 * 233.64146 * 10 9 7 12 12 H 1.08996 * 109.49684 * 65.30241 * 11 10 9 13 13 N 1.46506 * 109.49505 * 185.36765 * 11 10 9 14 14 C 1.34770 * 119.99816 * 274.93658 * 13 11 10 15 15 O 1.21280 * 120.00266 * 359.97438 * 14 13 11 16 16 C 1.50706 * 120.00113 * 180.02562 * 14 13 11 17 17 H 1.09000 * 115.54499 * 34.32762 * 16 14 13 18 18 C 1.53002 * 117.49904 * 248.62283 * 16 14 13 19 19 C 1.52991 * 117.49904 * 179.97438 * 16 14 13 20 20 C 1.52999 * 138.58532 * 238.37991 * 19 16 14 21 21 C 1.52994 * 138.59100 * 336.59173 * 19 16 14 22 22 C 1.53052 * 109.34029 * 305.33291 * 11 10 9 23 23 C 1.52928 * 109.55935 * 61.17736 * 22 11 10 24 24 C 1.53074 * 109.56373 * 58.97971 * 23 22 11 25 25 C 1.53106 * 109.16315 * 176.89231 * 24 23 22 26 26 O 1.42896 * 109.40909 * 302.51548 * 25 24 23 27 27 C 1.42912 * 114.13499 * 61.17184 * 26 25 24 28 28 C 1.53093 * 109.59476 * 178.77875 * 23 22 11 29 29 C 1.46942 * 120.64393 * 151.82321 * 9 7 2 30 30 H 0.97002 * 119.99423 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.58613 * 113.85259 * 10 9 7 32 32 H 1.08993 * 109.58998 * 353.43332 * 10 9 7 33 33 H 0.97001 * 119.99971 * 94.93284 * 13 11 10 34 34 H 1.08993 * 117.50062 * 145.02045 * 18 16 14 35 35 H 1.08998 * 117.49868 * 359.97438 * 18 16 14 36 36 H 1.08992 * 117.49842 * 23.40580 * 20 19 16 37 37 H 1.09006 * 117.49450 * 238.38567 * 20 19 16 38 38 H 1.09005 * 117.49721 * 121.61907 * 21 19 16 39 39 H 1.08991 * 117.51960 * 336.59327 * 21 19 16 40 40 H 1.09001 * 109.45348 * 181.23493 * 22 11 10 41 41 H 1.09002 * 109.45865 * 301.18037 * 22 11 10 42 42 H 1.09001 * 109.52465 * 296.79882 * 24 23 22 43 43 H 1.09004 * 109.52532 * 56.98805 * 24 23 22 44 44 H 1.09001 * 109.48598 * 182.53826 * 25 24 23 45 45 H 1.09001 * 109.48458 * 62.49182 * 25 24 23 46 46 H 1.08996 * 109.48663 * 178.83769 * 27 26 25 47 47 H 1.09004 * 109.49237 * 58.80684 * 27 26 25 48 48 H 1.09003 * 109.51916 * 303.02127 * 28 23 22 49 49 H 1.08998 * 109.52152 * 63.20773 * 28 23 22 50 50 H 1.09000 * 109.58340 * 246.31604 * 29 9 7 51 51 H 1.09003 * 109.58300 * 6.59252 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0551 -1.2223 -0.2730 9 7 1.3702 -2.3624 0.3446 10 6 0.2263 -2.3409 1.2665 11 6 0.4984 -3.3198 2.4132 12 1 1.3481 -2.9677 2.9981 13 7 -0.6847 -3.4068 3.2728 14 6 -0.8689 -2.5066 4.2588 15 8 -0.0550 -1.6249 4.4348 16 6 -2.0856 -2.5964 5.1435 17 1 -2.4366 -3.6056 5.3592 18 6 -3.1392 -1.4951 5.0097 19 6 -2.2372 -1.5456 6.2451 20 6 -2.3730 -1.4911 7.7680 21 6 -1.3513 -0.6001 7.0587 22 6 0.8131 -4.7019 1.8359 23 6 2.0646 -4.6184 0.9610 24 6 3.2427 -4.1142 1.7983 25 6 4.5069 -4.1080 0.9346 26 8 4.7428 -5.4233 0.4286 27 6 3.6946 -5.9266 -0.4022 28 6 2.3978 -6.0064 0.4077 29 6 1.8136 -3.6530 -0.2004 30 1 -0.4849 0.8401 0.0004 31 1 -0.6766 -2.6422 0.7355 32 1 0.0987 -1.3354 1.6671 33 1 -1.3355 -4.1122 3.1323 34 1 -4.1836 -1.7795 5.1372 35 1 -2.9522 -0.7054 4.2821 36 1 -1.9921 -2.3385 8.3379 37 1 -3.2618 -1.0105 8.1772 38 1 -1.5678 0.4667 7.0012 39 1 -0.2982 -0.8611 7.1623 40 1 0.9855 -5.4050 2.6508 41 1 -0.0284 -5.0440 1.2335 42 1 3.0351 -3.1027 2.1474 43 1 3.3897 -4.7730 2.6543 44 1 5.3580 -3.7926 1.5382 45 1 4.3752 -3.4166 0.1023 46 1 3.9607 -6.9207 -0.7613 47 1 3.5519 -5.2592 -1.2521 48 1 2.5264 -6.7064 1.2333 49 1 1.5865 -6.3462 -0.2361 50 1 1.0405 -4.0592 -0.8526 51 1 2.7339 -3.5133 -0.7676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089957494.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:59 Heat of formation + Delta-G solvation = -23.155396 kcal Electronic energy + Delta-G solvation = -30889.126707 eV Core-core repulsion = 26982.927885 eV Total energy + Delta-G solvation = -3906.198822 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.59281 -40.75200 -38.81760 -38.00712 -35.80780 -35.30017 -33.61952 -32.80141 -31.95483 -31.13331 -28.34545 -27.37290 -25.69252 -24.60274 -24.01493 -23.58730 -23.28964 -21.82889 -21.38038 -20.12484 -19.36718 -18.64322 -18.05063 -17.37327 -16.94799 -16.75959 -16.61929 -16.02254 -16.01269 -15.85569 -15.62031 -15.55042 -15.36522 -15.24488 -14.84353 -14.47206 -14.14332 -13.78890 -13.52106 -13.46651 -13.07969 -12.97149 -12.81421 -12.67745 -12.49606 -12.38155 -12.37041 -12.25825 -12.14513 -12.05404 -11.86847 -11.65941 -11.17625 -11.11210 -11.07496 -10.94485 -10.88611 -10.70486 -10.56076 -10.22797 -10.05025 -8.68682 -7.91038 -5.35934 1.37162 1.42862 1.46594 1.55149 2.08849 2.45892 2.75344 2.88161 3.02631 3.25736 3.34320 3.61865 3.73148 3.77133 3.83676 3.87998 3.96987 4.10789 4.20194 4.24949 4.33744 4.38322 4.40010 4.49491 4.52306 4.58957 4.63644 4.73341 4.75472 4.76759 4.79216 4.81119 4.87331 4.90281 4.96890 5.00325 5.02800 5.05511 5.12005 5.21895 5.25876 5.27138 5.33261 5.41620 5.48635 5.51852 5.59668 5.77621 6.32193 6.34176 6.67663 7.10198 7.38839 7.82956 8.32355 9.13355 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009462 B = 0.004491 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.633695 B = 6233.417694 C = 8161.134346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.045 4.045 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.296 1.296 6 H -0.287 1.287 7 C -0.257 4.257 8 H 0.066 0.934 9 N -0.598 5.598 10 C 0.182 3.818 11 C 0.132 3.868 12 H 0.054 0.946 13 N -0.707 5.707 14 C 0.526 3.474 15 O -0.584 6.584 16 C -0.138 4.138 17 H 0.160 0.840 18 C -0.094 4.094 19 C -0.225 4.225 20 C -0.091 4.091 21 C -0.143 4.143 22 C -0.094 4.094 23 C -0.067 4.067 24 C -0.130 4.130 25 C 0.066 3.934 26 O -0.396 6.396 27 C 0.054 3.946 28 C -0.131 4.131 29 C 0.152 3.848 30 H 0.246 0.754 31 H -0.003 1.003 32 H 0.042 0.958 33 H 0.413 0.587 34 H 0.142 0.858 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.051 0.949 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.039 0.961 46 H 0.116 0.884 47 H 0.044 0.956 48 H 0.083 0.917 49 H 0.089 0.911 50 H 0.018 0.982 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.479 -14.162 9.573 17.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.241 4.241 3 Si 0.782 3.218 4 H -0.193 1.193 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.387 4.387 8 H 0.083 0.917 9 N -0.321 5.321 10 C 0.055 3.945 11 C 0.026 3.974 12 H 0.072 0.928 13 N -0.358 5.358 14 C 0.314 3.686 15 O -0.464 6.464 16 C -0.158 4.158 17 H 0.178 0.822 18 C -0.131 4.131 19 C -0.226 4.226 20 C -0.127 4.127 21 C -0.180 4.180 22 C -0.132 4.132 23 C -0.069 4.069 24 C -0.168 4.168 25 C -0.010 4.010 26 O -0.315 6.315 27 C -0.022 4.022 28 C -0.169 4.169 29 C 0.027 3.973 30 H 0.055 0.945 31 H 0.016 0.984 32 H 0.060 0.940 33 H 0.250 0.750 34 H 0.160 0.840 35 H 0.090 0.910 36 H 0.129 0.871 37 H 0.139 0.861 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.113 0.887 45 H 0.058 0.942 46 H 0.134 0.866 47 H 0.063 0.937 48 H 0.101 0.899 49 H 0.107 0.893 50 H 0.036 0.964 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.821 -13.506 9.687 17.054 hybrid contribution -0.059 1.582 -0.543 1.673 sum -3.879 -11.925 9.143 15.519 Atomic orbital electron populations 1.70151 1.06523 1.25481 1.55194 1.25681 0.95919 1.01204 1.01330 0.85551 0.77879 0.80141 0.78251 1.19251 1.22179 1.21376 1.19343 0.92645 0.85966 1.40745 0.91671 1.44071 1.35690 1.02356 1.49967 1.20758 0.88019 0.97360 0.88405 1.21502 0.87243 0.97470 0.91204 0.92772 1.45845 1.25785 1.31951 1.32200 1.20449 0.86889 0.80613 0.80652 1.90707 1.47331 1.36158 1.72182 1.22037 0.96145 0.98611 0.99022 0.82219 1.22715 0.96434 0.97721 0.96268 1.21421 1.06079 1.03402 0.91680 1.22858 1.00488 1.01138 0.88247 1.22574 0.96349 0.96795 1.02299 1.21640 0.97956 0.94322 0.99307 1.20906 0.94268 0.95853 0.95870 1.22023 0.95073 1.01217 0.98493 1.22506 0.97722 0.83978 0.96834 1.87841 1.44199 1.31811 1.67664 1.22772 0.87065 1.00224 0.92157 1.22127 0.98500 0.95081 1.01165 1.21196 0.97182 0.85425 0.93465 0.94515 0.98450 0.93985 0.75019 0.84018 0.90965 0.87137 0.86058 0.88875 0.90426 0.89921 0.90542 0.92994 0.91157 0.88652 0.94236 0.86561 0.93739 0.89852 0.89279 0.96363 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.30 11.20 21.65 0.24 -57.05 16 2 C -0.05 -2.66 4.92 84.86 0.42 -2.24 16 3 Si 0.95 47.71 29.59 68.60 2.03 49.74 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 6 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 7 C -0.26 -14.43 9.58 84.03 0.81 -13.62 16 8 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 9 N -0.60 -29.92 2.40 -699.24 -1.68 -31.59 16 10 C 0.18 9.01 4.88 86.36 0.42 9.43 16 11 C 0.13 5.08 2.27 45.07 0.10 5.18 16 12 H 0.05 2.46 5.87 -2.39 -0.01 2.44 16 13 N -0.71 -22.63 5.08 -442.13 -2.25 -24.88 16 14 C 0.53 18.93 7.58 87.66 0.66 19.59 16 15 O -0.58 -27.76 15.91 -3.03 -0.05 -27.81 16 16 C -0.14 -3.49 6.19 -11.54 -0.07 -3.56 16 17 H 0.16 2.70 8.14 -2.39 -0.02 2.68 16 18 C -0.09 -2.28 10.24 30.61 0.31 -1.96 16 19 C -0.23 -5.71 5.06 -52.17 -0.26 -5.97 16 20 C -0.09 -1.66 10.53 30.59 0.32 -1.34 16 21 C -0.14 -3.84 10.16 30.59 0.31 -3.53 16 22 C -0.09 -2.76 4.19 30.59 0.13 -2.63 16 23 C -0.07 -2.06 0.52 -52.12 -0.03 -2.09 16 24 C -0.13 -4.33 4.37 30.65 0.13 -4.20 16 25 C 0.07 2.10 6.57 72.02 0.47 2.57 16 26 O -0.40 -11.63 10.76 -148.98 -1.60 -13.23 16 27 C 0.05 1.30 6.57 72.02 0.47 1.78 16 28 C -0.13 -3.03 4.92 30.66 0.15 -2.88 16 29 C 0.15 6.03 4.60 86.33 0.40 6.43 16 30 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 31 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H 0.04 2.53 6.06 -2.39 -0.01 2.52 16 33 H 0.41 9.60 8.60 -92.71 -0.80 8.80 16 34 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.12 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 39 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.05 2.14 6.11 -2.39 -0.01 2.13 16 43 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 44 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 45 H 0.04 1.40 6.48 -2.39 -0.02 1.39 16 46 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.04 1.15 6.74 -2.38 -0.02 1.14 16 48 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.05 2.14 4.85 -2.39 -0.01 2.13 16 Total: -1.00 -76.78 390.56 1.58 -75.20 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.13 Total: 28.66 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 4.75 Total: 0.97 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -3.68 Total: -113.53 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -1.65 Total: -41.04 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Total: -76.78 1.58 -75.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089957494.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.044 kcal (2) G-P(sol) polarization free energy of solvation -76.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds