Wall clock time and date at job start Tue Mar 31 2020 19:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99680 * 2 1 4 4 H 1.48500 * 109.47011 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47455 * 299.99701 * 3 2 1 6 6 H 1.48503 * 109.47359 * 59.99748 * 3 2 1 7 7 C 1.38805 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00200 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99859 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99823 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47259 * 204.99656 * 10 9 7 12 12 C 1.53008 * 109.47331 * 179.97438 * 11 10 9 13 13 C 1.52944 * 109.50693 * 59.91712 * 12 11 10 14 14 C 1.52948 * 109.57329 * 300.17061 * 13 12 11 15 15 C 1.53008 * 109.47218 * 85.02037 * 10 9 7 16 16 C 1.52815 * 109.47390 * 180.40389 * 13 12 11 17 17 N 1.47157 * 108.61774 * 187.90288 * 16 13 12 18 18 C 1.34781 * 120.99010 * 230.44474 * 17 16 13 19 19 O 1.21615 * 120.00005 * 174.16091 * 18 17 16 20 20 C 1.47097 * 119.99884 * 354.16764 * 18 17 16 21 21 C 1.32996 * 120.00024 * 174.04693 * 20 18 17 22 22 C 1.50704 * 120.00024 * 352.91170 * 21 20 18 23 23 C 1.53001 * 117.49854 * 181.77724 * 22 21 20 24 24 C 1.52993 * 117.50130 * 113.11614 * 22 21 20 25 25 C 1.47153 * 118.01882 * 50.18000 * 17 16 13 26 26 C 1.53293 * 108.39480 * 309.70533 * 25 17 16 27 27 O 1.42898 * 109.59350 * 60.43096 * 13 12 11 28 28 H 0.97001 * 120.00483 * 0.02562 * 1 2 3 29 29 H 0.96994 * 120.00126 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47974 * 325.01062 * 10 9 7 31 31 H 1.08995 * 109.46843 * 59.95964 * 11 10 9 32 32 H 1.08994 * 109.47036 * 299.95744 * 11 10 9 33 33 H 1.08991 * 109.46393 * 299.90285 * 12 11 10 34 34 H 1.09000 * 109.46232 * 179.97438 * 12 11 10 35 35 H 1.09006 * 109.46449 * 179.85503 * 14 13 12 36 36 H 1.08992 * 109.46859 * 299.83864 * 14 13 12 37 37 H 1.09005 * 109.47650 * 300.05084 * 15 10 9 38 38 H 1.09002 * 109.47656 * 60.06030 * 15 10 9 39 39 H 1.08999 * 109.61440 * 68.07146 * 16 13 12 40 40 H 1.09006 * 109.51242 * 307.66670 * 16 13 12 41 41 H 1.07999 * 120.00430 * 354.32653 * 20 18 17 42 42 H 1.07996 * 120.00060 * 172.90230 * 21 20 18 43 43 H 1.08999 * 115.54147 * 327.44177 * 22 21 20 44 44 H 1.08998 * 117.49972 * 359.97438 * 23 22 21 45 45 H 1.09003 * 117.49801 * 145.01626 * 23 22 21 46 46 H 1.08998 * 117.49810 * 214.97526 * 24 22 21 47 47 H 1.08997 * 117.49870 * 359.97438 * 24 22 21 48 48 H 1.08998 * 109.68331 * 69.43066 * 25 17 16 49 49 H 1.08999 * 109.68216 * 189.98411 * 25 17 16 50 50 H 1.09001 * 109.50666 * 172.22933 * 26 25 17 51 51 H 1.08999 * 109.51327 * 292.37567 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.1810 -4.7522 -0.6090 12 6 1.9463 -6.0771 -0.6096 13 6 2.3129 -6.4558 0.8262 14 6 3.1874 -5.3601 1.4377 15 6 2.4216 -4.0358 1.4377 16 6 3.0859 -7.7740 0.8238 17 7 3.2629 -8.2173 2.2158 18 6 4.4767 -8.5715 2.6823 19 8 4.6226 -8.8329 3.8611 20 6 5.6251 -8.6418 1.7657 21 6 6.8441 -8.8749 2.2437 22 6 7.0762 -8.9082 3.7324 23 6 8.5081 -9.1397 4.2192 24 6 7.4634 -10.2499 4.3572 25 6 2.0761 -8.2568 3.0849 26 6 1.3539 -6.9087 2.9790 27 8 1.1217 -6.6058 1.6012 28 1 -0.4851 0.8400 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.9690 -3.5506 -0.5887 31 1 0.9211 -4.4820 -1.6325 32 1 0.2707 -4.8590 -0.0191 33 1 2.8558 -5.9709 -1.2008 34 1 1.3211 -6.8575 -1.0435 35 1 3.4455 -5.6305 2.4616 36 1 4.0989 -5.2524 0.8498 37 1 3.0457 -3.2552 1.8727 38 1 1.5107 -4.1433 2.0266 39 1 4.0606 -7.6258 0.3589 40 1 2.5239 -8.5247 0.2681 41 1 5.4791 -8.4996 0.7052 42 1 7.6677 -9.0404 1.5650 43 1 6.4459 -8.2418 4.3213 44 1 9.2822 -9.2683 3.4627 45 1 8.8197 -8.6260 5.1287 46 1 7.0882 -10.4662 5.3575 47 1 7.5499 -11.1087 3.6916 48 1 1.4100 -9.0564 2.7607 49 1 2.3822 -8.4291 4.1167 50 1 0.4010 -6.9640 3.5052 51 1 1.9717 -6.1288 3.4242 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093393020.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:59 Heat of formation + Delta-G solvation = -18.102902 kcal Electronic energy + Delta-G solvation = -30067.892395 eV Core-core repulsion = 26161.912666 eV Total energy + Delta-G solvation = -3905.979729 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.96203 -39.38840 -37.53216 -36.57094 -34.79766 -33.83334 -32.78243 -31.60761 -30.49337 -29.72098 -28.22140 -25.52283 -24.86388 -23.31997 -22.90625 -22.57693 -22.15792 -21.11651 -20.18065 -19.28102 -18.69003 -17.60237 -17.07924 -16.42154 -15.98438 -15.69734 -15.60528 -15.09449 -14.91089 -14.75140 -14.54102 -13.86329 -13.73316 -13.56164 -13.43053 -13.31149 -13.19479 -12.60953 -12.42445 -12.12036 -11.97246 -11.92025 -11.83761 -11.80671 -11.60922 -11.31051 -11.05150 -10.91876 -10.86171 -10.68842 -10.60587 -10.46760 -10.16138 -10.09609 -9.91134 -9.72793 -9.56794 -9.47784 -9.34571 -8.83869 -8.53869 -6.90638 -5.73193 -3.01270 1.06807 2.73343 3.04405 3.44370 3.49929 3.52169 3.71378 3.74480 4.25220 4.38401 4.53320 4.62857 4.68981 4.75707 4.80352 4.83756 4.91919 5.03213 5.07602 5.08594 5.18870 5.31822 5.37953 5.40323 5.44981 5.54577 5.61041 5.61844 5.65687 5.69734 5.80857 5.86084 5.86928 5.88165 5.89606 5.96488 6.07232 6.13875 6.22064 6.28106 6.30044 6.40994 6.55990 6.69099 6.76419 7.03836 7.19114 7.20335 7.27656 7.73167 8.01133 8.45855 9.56734 10.16635 10.51132 11.49665 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015032 B = 0.002726 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.267571 B =10270.214239 C =11283.031843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.180 3.820 11 C -0.119 4.119 12 C -0.097 4.097 13 C 0.110 3.890 14 C -0.138 4.138 15 C -0.129 4.129 16 C 0.084 3.916 17 N -0.609 5.609 18 C 0.549 3.451 19 O -0.537 6.537 20 C -0.221 4.221 21 C -0.030 4.030 22 C -0.128 4.128 23 C -0.186 4.186 24 C -0.156 4.156 25 C 0.079 3.921 26 C 0.044 3.956 27 O -0.358 6.358 28 H 0.254 0.746 29 H 0.384 0.616 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.132 0.868 42 H 0.127 0.873 43 H 0.132 0.868 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.091 0.909 48 H 0.073 0.927 49 H 0.098 0.902 50 H 0.103 0.897 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.012 -23.034 3.550 25.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.365 5.365 10 C 0.071 3.929 11 C -0.158 4.158 12 C -0.135 4.135 13 C 0.069 3.931 14 C -0.177 4.177 15 C -0.169 4.169 16 C -0.039 4.039 17 N -0.342 5.342 18 C 0.341 3.659 19 O -0.417 6.417 20 C -0.242 4.242 21 C -0.050 4.050 22 C -0.146 4.146 23 C -0.223 4.223 24 C -0.194 4.194 25 C -0.044 4.044 26 C -0.034 4.034 27 O -0.276 6.276 28 H 0.064 0.936 29 H 0.217 0.783 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.150 0.850 42 H 0.145 0.855 43 H 0.150 0.850 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.109 0.891 48 H 0.091 0.909 49 H 0.117 0.883 50 H 0.121 0.879 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.013 -23.000 4.078 25.825 hybrid contribution 0.346 0.947 0.057 1.010 sum 11.359 -22.052 4.135 25.148 Atomic orbital electron populations 1.69673 1.05064 1.25410 1.58022 1.24731 0.95497 0.97614 1.03306 0.86157 0.78774 0.84367 0.77156 1.20621 1.21925 1.21962 1.19281 0.90937 0.84206 1.42149 0.91279 1.42439 1.05817 0.99784 1.88475 1.20189 0.94143 0.86058 0.92557 1.21712 0.99470 0.93240 1.01356 1.21449 1.01108 0.98738 0.92202 1.21735 0.85703 0.92422 0.93201 1.22088 0.98709 0.96354 1.00504 1.22167 0.99594 0.93909 1.01247 1.22492 1.02086 0.97002 0.82356 1.47994 1.07699 1.66189 1.12351 1.18592 0.82855 0.76658 0.87825 1.90737 1.83662 1.50255 1.17018 1.22654 0.93166 1.08360 1.00012 1.23140 0.96170 0.90326 0.95342 1.21567 0.97741 1.01989 0.93278 1.23095 0.92175 1.03605 1.03441 1.22800 1.02547 0.91857 1.02149 1.22297 0.86639 0.98786 0.96653 1.22959 1.01200 0.94856 0.84364 1.88031 1.29421 1.90849 1.19332 0.93639 0.78291 0.93970 0.91845 0.91327 0.90608 0.91439 0.92456 0.91513 0.92320 0.92213 0.88756 0.90637 0.85049 0.85543 0.85002 0.88884 0.88599 0.88585 0.89085 0.90919 0.88333 0.87880 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.90 22.52 29.55 -169.99 -5.02 17.50 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.23 -6.51 9.93 -15.06 -0.15 -6.66 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.72 -18.21 5.12 -53.42 -0.27 -18.48 16 10 C 0.18 3.53 2.77 -67.92 -0.19 3.34 16 11 C -0.12 -1.95 5.25 -26.73 -0.14 -2.09 16 12 C -0.10 -1.19 4.94 -26.76 -0.13 -1.32 16 13 C 0.11 1.34 0.68 -90.77 -0.06 1.28 16 14 C -0.14 -1.93 4.17 -26.77 -0.11 -2.04 16 15 C -0.13 -2.32 5.36 -26.74 -0.14 -2.46 16 16 C 0.08 0.82 5.10 -3.78 -0.02 0.80 16 17 N -0.61 -6.74 2.55 -173.96 -0.44 -7.18 16 18 C 0.55 6.56 7.56 -12.67 -0.10 6.46 16 19 O -0.54 -7.70 12.78 5.26 0.07 -7.64 16 20 C -0.22 -2.06 9.22 -37.81 -0.35 -2.41 16 21 C -0.03 -0.26 9.74 -36.12 -0.35 -0.61 16 22 C -0.13 -1.26 4.34 -91.77 -0.40 -1.66 16 23 C -0.19 -1.45 10.24 -26.69 -0.27 -1.73 16 24 C -0.16 -1.36 10.24 -26.70 -0.27 -1.63 16 25 C 0.08 0.85 6.66 -3.53 -0.02 0.82 16 26 C 0.04 0.51 6.60 37.31 0.25 0.76 16 27 O -0.36 -4.87 8.94 -35.23 -0.31 -5.19 16 28 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.38 10.33 7.80 -40.82 -0.32 10.01 16 30 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.21 7.70 -51.93 -0.40 0.81 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.82 6.10 -51.93 -0.32 0.50 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.06 1.15 7.70 -51.93 -0.40 0.75 16 39 H 0.09 0.76 5.60 -51.93 -0.29 0.47 16 40 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16 41 H 0.13 0.92 6.17 -52.49 -0.32 0.60 16 42 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.13 1.63 6.23 -51.93 -0.32 1.31 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.10 1.10 7.06 -51.93 -0.37 0.73 16 50 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 51 H 0.06 0.79 6.25 -51.93 -0.32 0.47 16 LS Contribution 392.20 15.07 5.91 5.91 Total: -1.00 -32.37 392.20 -10.44 -42.81 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -8.53 Total: 9.64 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -2.56 Total: -9.70 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: 0.01 Total: -53.34 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.25 Total: -12.82 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.37 -10.44 -42.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093393020.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.703 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds