Wall clock time and date at job start Tue Mar 31 2020 19:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99680 * 2 1 4 4 H 1.48500 * 109.47011 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47455 * 299.99701 * 3 2 1 6 6 H 1.48503 * 109.47359 * 59.99748 * 3 2 1 7 7 C 1.38805 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00200 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99859 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99823 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47259 * 204.99656 * 10 9 7 12 12 C 1.53008 * 109.47331 * 179.97438 * 11 10 9 13 13 C 1.52944 * 109.50693 * 59.91712 * 12 11 10 14 14 C 1.52948 * 109.57329 * 300.17061 * 13 12 11 15 15 C 1.53008 * 109.47218 * 85.02037 * 10 9 7 16 16 C 1.52815 * 109.47390 * 180.40389 * 13 12 11 17 17 N 1.47157 * 108.61774 * 187.90288 * 16 13 12 18 18 C 1.34781 * 120.99010 * 230.44474 * 17 16 13 19 19 O 1.21615 * 120.00005 * 174.16091 * 18 17 16 20 20 C 1.47097 * 119.99884 * 354.16764 * 18 17 16 21 21 C 1.32996 * 120.00024 * 174.04693 * 20 18 17 22 22 C 1.50704 * 120.00024 * 352.91170 * 21 20 18 23 23 C 1.53001 * 117.49854 * 181.77724 * 22 21 20 24 24 C 1.52993 * 117.50130 * 113.11614 * 22 21 20 25 25 C 1.47153 * 118.01882 * 50.18000 * 17 16 13 26 26 C 1.53293 * 108.39480 * 309.70533 * 25 17 16 27 27 O 1.42898 * 109.59350 * 60.43096 * 13 12 11 28 28 H 0.97001 * 120.00483 * 0.02562 * 1 2 3 29 29 H 0.96994 * 120.00126 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47974 * 325.01062 * 10 9 7 31 31 H 1.08995 * 109.46843 * 59.95964 * 11 10 9 32 32 H 1.08994 * 109.47036 * 299.95744 * 11 10 9 33 33 H 1.08991 * 109.46393 * 299.90285 * 12 11 10 34 34 H 1.09000 * 109.46232 * 179.97438 * 12 11 10 35 35 H 1.09006 * 109.46449 * 179.85503 * 14 13 12 36 36 H 1.08992 * 109.46859 * 299.83864 * 14 13 12 37 37 H 1.09005 * 109.47650 * 300.05084 * 15 10 9 38 38 H 1.09002 * 109.47656 * 60.06030 * 15 10 9 39 39 H 1.08999 * 109.61440 * 68.07146 * 16 13 12 40 40 H 1.09006 * 109.51242 * 307.66670 * 16 13 12 41 41 H 1.07999 * 120.00430 * 354.32653 * 20 18 17 42 42 H 1.07996 * 120.00060 * 172.90230 * 21 20 18 43 43 H 1.08999 * 115.54147 * 327.44177 * 22 21 20 44 44 H 1.08998 * 117.49972 * 359.97438 * 23 22 21 45 45 H 1.09003 * 117.49801 * 145.01626 * 23 22 21 46 46 H 1.08998 * 117.49810 * 214.97526 * 24 22 21 47 47 H 1.08997 * 117.49870 * 359.97438 * 24 22 21 48 48 H 1.08998 * 109.68331 * 69.43066 * 25 17 16 49 49 H 1.08999 * 109.68216 * 189.98411 * 25 17 16 50 50 H 1.09001 * 109.50666 * 172.22933 * 26 25 17 51 51 H 1.08999 * 109.51327 * 292.37567 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.1810 -4.7522 -0.6090 12 6 1.9463 -6.0771 -0.6096 13 6 2.3129 -6.4558 0.8262 14 6 3.1874 -5.3601 1.4377 15 6 2.4216 -4.0358 1.4377 16 6 3.0859 -7.7740 0.8238 17 7 3.2629 -8.2173 2.2158 18 6 4.4767 -8.5715 2.6823 19 8 4.6226 -8.8329 3.8611 20 6 5.6251 -8.6418 1.7657 21 6 6.8441 -8.8749 2.2437 22 6 7.0762 -8.9082 3.7324 23 6 8.5081 -9.1397 4.2192 24 6 7.4634 -10.2499 4.3572 25 6 2.0761 -8.2568 3.0849 26 6 1.3539 -6.9087 2.9790 27 8 1.1217 -6.6058 1.6012 28 1 -0.4851 0.8400 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.9690 -3.5506 -0.5887 31 1 0.9211 -4.4820 -1.6325 32 1 0.2707 -4.8590 -0.0191 33 1 2.8558 -5.9709 -1.2008 34 1 1.3211 -6.8575 -1.0435 35 1 3.4455 -5.6305 2.4616 36 1 4.0989 -5.2524 0.8498 37 1 3.0457 -3.2552 1.8727 38 1 1.5107 -4.1433 2.0266 39 1 4.0606 -7.6258 0.3589 40 1 2.5239 -8.5247 0.2681 41 1 5.4791 -8.4996 0.7052 42 1 7.6677 -9.0404 1.5650 43 1 6.4459 -8.2418 4.3213 44 1 9.2822 -9.2683 3.4627 45 1 8.8197 -8.6260 5.1287 46 1 7.0882 -10.4662 5.3575 47 1 7.5499 -11.1087 3.6916 48 1 1.4100 -9.0564 2.7607 49 1 2.3822 -8.4291 4.1167 50 1 0.4010 -6.9640 3.5052 51 1 1.9717 -6.1288 3.4242 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093393020.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:58 Heat of formation + Delta-G solvation = -37.132868 kcal Electronic energy + Delta-G solvation = -30068.717596 eV Core-core repulsion = 26161.912666 eV Total energy + Delta-G solvation = -3906.804931 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.90936 -40.34063 -38.38027 -37.80497 -35.74706 -35.47030 -33.61884 -33.10428 -31.79817 -31.09244 -29.41014 -26.88501 -25.67510 -25.03933 -23.96794 -23.29885 -23.14762 -22.10765 -21.34797 -20.47673 -19.55002 -19.08653 -18.38755 -17.30154 -17.23158 -16.66150 -16.52144 -16.42963 -16.00139 -15.67223 -15.61228 -15.32688 -15.26395 -14.71646 -14.46063 -14.31859 -14.04881 -13.97486 -13.74190 -13.22668 -13.11183 -13.10347 -12.90270 -12.79443 -12.64898 -12.56667 -12.42128 -12.21617 -12.06847 -11.98172 -11.96379 -11.82835 -11.64654 -11.36635 -11.28639 -11.06503 -10.91040 -10.68456 -10.51951 -10.04430 -9.42297 -8.97878 -7.93028 -5.20878 0.37970 1.45954 1.46816 1.56590 1.92479 2.24894 2.56209 2.77395 3.08609 3.39600 3.53100 3.58435 3.72316 3.81777 3.82450 3.93975 4.01970 4.05969 4.16571 4.17662 4.22708 4.32455 4.40658 4.41933 4.44290 4.57185 4.59525 4.63968 4.64561 4.68487 4.75218 4.77435 4.87754 4.93993 4.99409 5.01149 5.09268 5.15307 5.18483 5.25287 5.30361 5.32289 5.32914 5.44466 5.50692 5.57854 5.60839 5.68344 6.28353 6.30590 6.39301 7.17124 7.34931 8.13875 8.35941 9.31003 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015032 B = 0.002726 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.267571 B =10270.214239 C =11283.031843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.297 1.297 7 C -0.232 4.232 8 H 0.074 0.926 9 N -0.740 5.740 10 C 0.175 3.825 11 C -0.111 4.111 12 C -0.090 4.090 13 C 0.109 3.891 14 C -0.127 4.127 15 C -0.117 4.117 16 C 0.089 3.911 17 N -0.611 5.611 18 C 0.539 3.461 19 O -0.572 6.572 20 C -0.233 4.233 21 C -0.022 4.022 22 C -0.149 4.149 23 C -0.170 4.170 24 C -0.161 4.161 25 C 0.084 3.916 26 C 0.046 3.954 27 O -0.376 6.376 28 H 0.249 0.751 29 H 0.370 0.630 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.052 0.948 36 H 0.084 0.916 37 H 0.030 0.970 38 H 0.037 0.963 39 H 0.120 0.880 40 H 0.096 0.904 41 H 0.161 0.839 42 H 0.161 0.839 43 H 0.099 0.901 44 H 0.115 0.885 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.103 0.897 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.115 0.885 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.410 -25.026 1.846 28.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.799 3.201 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.224 1.224 7 C -0.364 4.364 8 H 0.092 0.908 9 N -0.379 5.379 10 C 0.067 3.933 11 C -0.149 4.149 12 C -0.128 4.128 13 C 0.069 3.931 14 C -0.166 4.166 15 C -0.157 4.157 16 C -0.034 4.034 17 N -0.344 5.344 18 C 0.332 3.668 19 O -0.454 6.454 20 C -0.253 4.253 21 C -0.041 4.041 22 C -0.168 4.168 23 C -0.207 4.207 24 C -0.198 4.198 25 C -0.039 4.039 26 C -0.032 4.032 27 O -0.295 6.295 28 H 0.058 0.942 29 H 0.201 0.799 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.120 0.880 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.138 0.862 40 H 0.114 0.886 41 H 0.179 0.821 42 H 0.178 0.822 43 H 0.117 0.883 44 H 0.133 0.867 45 H 0.114 0.886 46 H 0.104 0.896 47 H 0.121 0.879 48 H 0.105 0.895 49 H 0.107 0.893 50 H 0.133 0.867 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 13.447 -25.030 2.364 28.512 hybrid contribution -0.401 1.538 0.677 1.727 sum 13.047 -23.492 3.041 27.043 Atomic orbital electron populations 1.69832 1.06605 1.25781 1.60079 1.25543 0.96364 1.01030 1.04284 0.85120 0.78306 0.80096 0.76571 1.18968 1.21954 1.22433 1.19648 0.91306 0.85335 1.40152 0.90788 1.42701 1.05409 1.01222 1.88524 1.20460 0.94319 0.84974 0.93525 1.21574 0.98659 0.94482 1.00185 1.21463 1.02096 0.96546 0.92657 1.21805 0.85308 0.93213 0.92793 1.21988 0.99109 0.94526 1.00938 1.21925 0.98672 0.95657 0.99462 1.22551 1.03284 0.95643 0.81893 1.48097 1.07507 1.65868 1.12911 1.19172 0.83650 0.76096 0.87867 1.90733 1.84189 1.51842 1.18650 1.22812 0.92225 1.09456 1.00844 1.23447 0.97049 0.88865 0.94777 1.21497 0.98806 1.02167 0.94282 1.23179 0.91581 1.02149 1.03774 1.22840 1.03023 0.92085 1.01840 1.22216 0.86872 0.98389 0.96440 1.22981 1.01694 0.94824 0.83680 1.88013 1.30414 1.91016 1.20050 0.94183 0.79878 0.93723 0.92279 0.93208 0.87996 0.89092 0.92979 0.89759 0.95074 0.94366 0.86231 0.88581 0.82122 0.82170 0.88324 0.86709 0.88639 0.89647 0.87885 0.89486 0.89342 0.86677 0.94020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.72 13.06 21.65 0.28 -60.44 16 2 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 3 Si 0.97 46.87 29.55 68.60 2.03 48.90 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 6 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 7 C -0.23 -13.07 9.93 84.03 0.83 -12.24 16 8 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -38.04 5.12 -322.92 -1.65 -39.69 16 10 C 0.18 6.84 2.77 44.99 0.12 6.96 16 11 C -0.11 -3.51 5.25 30.60 0.16 -3.35 16 12 C -0.09 -1.90 4.94 30.58 0.15 -1.75 16 13 C 0.11 2.40 0.68 -10.89 -0.01 2.39 16 14 C -0.13 -3.38 4.17 30.57 0.13 -3.25 16 15 C -0.12 -4.27 5.36 30.59 0.16 -4.11 16 16 C 0.09 1.41 5.10 86.19 0.44 1.85 16 17 N -0.61 -12.30 2.55 -822.53 -2.09 -14.40 16 18 C 0.54 12.10 7.56 86.57 0.65 12.75 16 19 O -0.57 -16.56 12.78 -4.08 -0.05 -16.62 16 20 C -0.23 -3.62 9.22 23.43 0.22 -3.41 16 21 C -0.02 -0.31 9.74 24.52 0.24 -0.08 16 22 C -0.15 -2.80 4.34 -11.54 -0.05 -2.85 16 23 C -0.17 -2.34 10.24 30.62 0.31 -2.02 16 24 C -0.16 -2.63 10.24 30.62 0.31 -2.32 16 25 C 0.08 1.72 6.66 86.35 0.57 2.30 16 26 C 0.05 1.05 6.60 72.08 0.48 1.53 16 27 O -0.38 -9.81 8.94 -148.98 -1.33 -11.14 16 28 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 29 H 0.37 20.70 7.80 -92.71 -0.72 19.98 16 30 H 0.04 1.73 8.08 -2.39 -0.02 1.71 16 31 H 0.06 1.91 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.76 7.70 -2.39 -0.02 1.74 16 33 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.05 1.46 6.10 -2.38 -0.01 1.45 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.04 1.53 7.70 -2.39 -0.02 1.51 16 39 H 0.12 1.31 5.60 -2.39 -0.01 1.30 16 40 H 0.10 1.23 8.13 -2.38 -0.02 1.21 16 41 H 0.16 1.45 6.17 -2.91 -0.02 1.43 16 42 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 43 H 0.10 2.54 6.23 -2.39 -0.01 2.52 16 44 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.09 2.01 7.06 -2.39 -0.02 1.99 16 50 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 51 H 0.04 1.12 6.25 -2.39 -0.01 1.10 16 Total: -1.00 -73.36 392.20 2.58 -70.79 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: 0.20 Total: 34.43 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 5.20 Total: -11.83 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -3.46 Total: -114.53 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -1.38 Total: -27.76 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -73.36 2.58 -70.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093393020.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.653 kcal (2) G-P(sol) polarization free energy of solvation -73.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds