Wall clock time and date at job start Tue Mar 31 2020 19:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00244 * 2 1 4 4 H 1.48498 * 109.47634 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47337 * 300.00220 * 3 2 1 6 6 H 1.48508 * 109.47186 * 60.00019 * 3 2 1 7 7 C 1.38810 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00792 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99693 * 0.02562 * 7 2 1 10 10 C 1.47578 * 134.49417 * 179.97438 * 9 7 2 11 11 C 1.53948 * 86.11955 * 155.35873 * 10 9 7 12 12 O 1.42901 * 113.74063 * 137.94999 * 11 10 9 13 13 C 1.42901 * 113.99663 * 151.92546 * 12 11 10 14 14 C 1.53047 * 109.45878 * 150.00132 * 13 12 11 15 15 C 1.53191 * 109.31291 * 181.38721 * 14 13 12 16 16 N 1.46920 * 108.77656 * 305.36702 * 15 14 13 17 17 C 1.34778 * 120.63399 * 233.58705 * 16 15 14 18 18 O 1.21283 * 119.99587 * 359.97438 * 17 16 15 19 19 C 1.50695 * 120.00643 * 180.02562 * 17 16 15 20 20 H 1.09001 * 115.55804 * 34.26122 * 19 17 16 21 21 C 1.53125 * 117.54595 * 248.47437 * 19 17 16 22 22 C 1.52460 * 59.85567 * 252.56397 * 21 19 17 23 23 C 1.53255 * 128.58417 * 242.39860 * 22 21 19 24 24 C 1.53886 * 86.88455 * 194.88651 * 23 22 21 25 25 C 1.53419 * 128.60798 * 117.51322 * 22 21 19 26 26 C 1.46930 * 118.73973 * 53.86024 * 16 15 14 27 27 C 1.53030 * 109.46345 * 270.07069 * 13 12 11 28 28 C 1.47815 * 134.45430 * 359.86783 * 9 7 2 29 29 H 0.97005 * 119.99709 * 359.97438 * 1 2 3 30 30 H 1.09000 * 113.77251 * 41.05935 * 10 9 7 31 31 H 1.09001 * 113.77333 * 269.66043 * 10 9 7 32 32 H 1.08998 * 113.74420 * 269.15552 * 11 10 9 33 33 H 1.09002 * 109.44774 * 30.03990 * 13 12 11 34 34 H 1.08995 * 109.49726 * 61.43611 * 14 13 12 35 35 H 1.09001 * 109.49426 * 301.33635 * 14 13 12 36 36 H 1.08998 * 109.58606 * 185.57251 * 15 14 13 37 37 H 1.09002 * 109.58594 * 65.15100 * 15 14 13 38 38 H 1.09004 * 117.51265 * 145.11284 * 21 19 17 39 39 H 1.08996 * 117.51279 * 0.02562 * 21 19 17 40 40 H 1.09009 * 113.64453 * 80.39320 * 23 22 21 41 41 H 1.08997 * 113.72782 * 309.40095 * 23 22 21 42 42 H 1.09002 * 113.58838 * 139.57331 * 24 23 22 43 43 H 1.08999 * 113.58827 * 270.31714 * 24 23 22 44 44 H 1.08994 * 113.64612 * 50.62436 * 25 22 21 45 45 H 1.09008 * 113.69177 * 279.57567 * 25 22 21 46 46 H 1.08995 * 109.59055 * 65.92746 * 26 16 15 47 47 H 1.09000 * 109.58431 * 186.35553 * 26 16 15 48 48 H 1.09010 * 109.49767 * 298.56408 * 27 13 12 49 49 H 1.08997 * 109.49890 * 58.66161 * 27 13 12 50 50 H 1.08999 * 113.77012 * 90.38225 * 28 9 7 51 51 H 1.08997 * 113.83833 * 318.91408 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.7201 -3.8101 0.0005 11 6 0.3470 -4.0829 0.6409 12 8 -0.3166 -5.2323 0.1113 13 6 -1.2050 -5.8668 1.0334 14 6 -2.3512 -6.5279 0.2644 15 6 -3.3198 -7.1772 1.2579 16 7 -2.5655 -8.0944 2.1229 17 6 -2.9458 -9.3804 2.2574 18 8 -3.9195 -9.7902 1.6616 19 6 -2.1621 -10.3088 3.1489 20 1 -1.7301 -9.8523 4.0395 21 6 -1.3722 -11.4359 2.4778 22 6 -2.6426 -11.7515 3.2595 23 6 -2.8017 -12.6122 4.5175 24 6 -4.3125 -12.6116 4.2249 25 6 -3.9534 -12.3638 2.7491 26 6 -1.3921 -7.5817 2.8434 27 6 -0.4419 -6.9292 1.8278 28 6 -0.1058 -2.7570 0.0025 29 1 -0.4850 0.8401 0.0004 30 1 2.5624 -4.0324 0.6557 31 1 1.8319 -4.2351 -0.9970 32 1 0.3594 -4.0639 1.7307 33 1 -1.6095 -5.1219 1.7187 34 1 -1.9495 -7.2901 -0.4031 35 1 -2.8799 -5.7743 -0.3194 36 1 -4.0834 -7.7329 0.7137 37 1 -3.7908 -6.4054 1.8666 38 1 -0.4207 -11.7206 2.9270 39 1 -1.4191 -11.5057 1.3911 40 1 -2.5347 -12.0938 5.4385 41 1 -2.3410 -13.5967 4.4366 42 1 -4.7914 -13.5747 4.4015 43 1 -4.8464 -11.7824 4.6890 44 1 -3.8136 -13.2788 2.1736 45 1 -4.6084 -11.6466 2.2542 46 1 -1.7091 -6.8422 3.5787 47 1 -0.8834 -8.4045 3.3456 48 1 -0.0581 -7.6878 1.1454 49 1 0.3884 -6.4614 2.3567 50 1 -0.5311 -2.8721 -0.9944 51 1 -0.7189 -2.1399 0.6593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093579943.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:36 Heat of formation + Delta-G solvation = 28.661284 kcal Electronic energy + Delta-G solvation = -28981.326099 eV Core-core repulsion = 25077.374217 eV Total energy + Delta-G solvation = -3903.951882 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.88858 -39.38275 -38.46223 -37.20247 -35.43504 -34.06953 -32.24754 -31.53734 -31.19252 -27.49452 -25.98261 -25.77681 -24.78262 -24.13290 -23.33973 -22.99327 -22.60016 -20.96351 -19.61482 -19.20638 -18.34119 -17.73425 -16.87199 -16.39535 -16.04080 -15.61415 -15.45766 -15.29210 -15.02309 -14.58330 -14.48956 -14.26903 -13.79810 -13.70761 -13.38747 -13.02949 -12.87666 -12.67512 -12.51109 -12.23624 -12.02221 -11.92117 -11.83426 -11.76528 -11.63823 -11.40220 -11.20294 -11.13462 -10.90850 -10.71744 -10.65414 -10.47438 -10.39712 -10.26404 -10.08875 -9.97932 -9.64818 -9.55756 -8.88364 -8.82032 -8.73611 -6.91471 -5.79487 -3.12424 2.25464 2.68335 3.37181 3.42161 3.44080 3.45216 3.92013 3.97275 4.21766 4.38907 4.46356 4.46929 4.53463 4.59528 4.64565 4.80034 4.88472 5.06771 5.10639 5.12632 5.19377 5.22364 5.33188 5.36175 5.40467 5.41228 5.44070 5.44822 5.50939 5.57013 5.58720 5.63215 5.67335 5.71293 5.79617 5.89022 5.96419 6.03305 6.07424 6.15345 6.20054 6.37574 6.39608 6.61640 6.64233 7.10154 7.17852 7.22256 7.51279 7.86439 7.95797 7.98881 9.01760 9.67671 10.56504 11.37809 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.035395 B = 0.001915 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.871256 B =14618.873160 C =14891.971578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.221 4.221 8 H 0.082 0.918 9 N -0.609 5.609 10 C 0.121 3.879 11 C 0.034 3.966 12 O -0.373 6.373 13 C 0.091 3.909 14 C -0.130 4.130 15 C 0.114 3.886 16 N -0.608 5.608 17 C 0.547 3.453 18 O -0.538 6.538 19 C -0.165 4.165 20 H 0.124 0.876 21 C -0.137 4.137 22 C -0.126 4.126 23 C -0.099 4.099 24 C -0.139 4.139 25 C -0.107 4.107 26 C 0.109 3.891 27 C -0.156 4.156 28 C 0.149 3.851 29 H 0.254 0.746 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.075 0.925 49 H 0.079 0.921 50 H 0.034 0.966 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.327 -24.885 9.818 27.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.206 4.206 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.348 4.348 8 H 0.100 0.900 9 N -0.337 5.337 10 C -0.005 4.005 11 C -0.024 4.024 12 O -0.291 6.291 13 C 0.033 3.967 14 C -0.168 4.168 15 C -0.008 4.008 16 N -0.342 5.342 17 C 0.336 3.664 18 O -0.415 6.415 19 C -0.186 4.186 20 H 0.142 0.858 21 C -0.174 4.174 22 C -0.126 4.126 23 C -0.137 4.137 24 C -0.176 4.176 25 C -0.144 4.144 26 C -0.014 4.014 27 C -0.194 4.194 28 C 0.023 3.977 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.114 0.886 46 H 0.090 0.910 47 H 0.107 0.893 48 H 0.093 0.907 49 H 0.098 0.902 50 H 0.052 0.948 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.789 -24.812 9.310 27.357 hybrid contribution 0.692 1.307 0.177 1.490 sum -6.096 -23.505 9.487 26.070 Atomic orbital electron populations 1.69839 1.05047 1.25290 1.56585 1.24816 0.95725 0.97628 1.02389 0.86017 0.78733 0.83547 0.77288 1.20396 1.21679 1.21674 1.19041 0.90280 0.81615 1.43903 0.90017 1.45704 1.02552 0.99319 1.86168 1.22723 0.93869 0.86153 0.97737 1.25028 0.94640 0.85358 0.97376 1.87962 1.58763 1.43529 1.38807 1.21956 0.90024 0.93419 0.91330 1.21976 0.95993 1.00651 0.98217 1.21626 0.94427 0.92345 0.92366 1.48120 1.29628 1.09734 1.46685 1.19657 0.84043 0.81519 0.81192 1.90618 1.27702 1.75349 1.47880 1.22090 1.04588 0.89915 1.01967 0.85786 1.22854 0.95694 0.98846 1.00015 1.22181 0.96570 0.94344 0.99520 1.22517 0.96753 0.98976 0.95415 1.22750 0.95785 1.01747 0.97316 1.22650 0.94764 1.00571 0.96365 1.21885 0.85905 0.99285 0.94351 1.22540 0.98623 0.99654 0.98612 1.22754 0.88139 0.88968 0.97816 0.93638 0.93657 0.94038 0.90239 0.92043 0.90874 0.89636 0.88549 0.91163 0.87646 0.88110 0.91434 0.89399 0.91403 0.90292 0.90100 0.88587 0.90996 0.89348 0.90661 0.90242 0.94822 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.44 11.39 55.49 0.63 -26.81 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.61 -15.95 3.70 -177.94 -0.66 -16.61 16 10 C 0.12 2.56 8.77 -2.97 -0.03 2.54 16 11 C 0.03 0.66 4.30 -25.79 -0.11 0.55 16 12 O -0.37 -6.37 10.01 -35.23 -0.35 -6.72 16 13 C 0.09 1.19 2.45 -26.69 -0.07 1.13 16 14 C -0.13 -1.54 5.73 -26.61 -0.15 -1.70 16 15 C 0.11 1.23 6.43 -3.71 -0.02 1.20 16 16 N -0.61 -6.33 2.97 -172.51 -0.51 -6.84 16 17 C 0.55 6.22 7.48 -10.99 -0.08 6.14 16 18 O -0.54 -7.67 13.51 5.55 0.08 -7.59 16 19 C -0.16 -1.42 4.97 -91.99 -0.46 -1.88 16 20 H 0.12 0.84 6.80 -51.93 -0.35 0.49 16 21 C -0.14 -1.06 10.24 -26.94 -0.28 -1.33 16 22 C -0.13 -1.05 2.88 -154.71 -0.45 -1.50 16 23 C -0.10 -0.66 8.10 -26.14 -0.21 -0.87 16 24 C -0.14 -1.02 8.07 -25.81 -0.21 -1.23 16 25 C -0.11 -0.96 7.64 -26.05 -0.20 -1.16 16 26 C 0.11 0.93 6.33 -3.48 -0.02 0.91 16 27 C -0.16 -1.64 5.71 -26.39 -0.15 -1.79 16 28 C 0.15 3.59 7.36 -2.82 -0.02 3.57 16 29 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.43 7.80 -51.93 -0.41 1.02 16 33 H 0.06 0.81 7.74 -51.93 -0.40 0.40 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.10 1.11 7.01 -51.93 -0.36 0.75 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.10 1.11 5.83 -51.92 -0.30 0.81 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.09 0.59 5.66 -51.93 -0.29 0.29 16 48 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 49 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 51 H 0.07 1.89 7.16 -51.93 -0.37 1.51 16 LS Contribution 399.54 15.07 6.02 6.02 Total: -1.00 -32.89 399.54 -11.33 -44.22 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -8.80 Total: -0.58 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -2.71 Total: -2.20 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -0.54 Total: -50.25 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.28 Total: -14.32 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.89 -11.33 -44.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093579943.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.878 kcal (2) G-P(sol) polarization free energy of solvation -32.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds