Wall clock time and date at job start Tue Mar 31 2020 19:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00244 * 2 1 4 4 H 1.48498 * 109.47634 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47337 * 300.00220 * 3 2 1 6 6 H 1.48508 * 109.47186 * 60.00019 * 3 2 1 7 7 C 1.38810 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00792 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99693 * 0.02562 * 7 2 1 10 10 C 1.47578 * 134.49417 * 179.97438 * 9 7 2 11 11 C 1.53948 * 86.11955 * 155.35873 * 10 9 7 12 12 O 1.42901 * 113.74063 * 137.94999 * 11 10 9 13 13 C 1.42901 * 113.99663 * 151.92546 * 12 11 10 14 14 C 1.53047 * 109.45878 * 150.00132 * 13 12 11 15 15 C 1.53191 * 109.31291 * 181.38721 * 14 13 12 16 16 N 1.46920 * 108.77656 * 305.36702 * 15 14 13 17 17 C 1.34778 * 120.63399 * 233.58705 * 16 15 14 18 18 O 1.21283 * 119.99587 * 359.97438 * 17 16 15 19 19 C 1.50695 * 120.00643 * 180.02562 * 17 16 15 20 20 H 1.09001 * 115.55804 * 34.26122 * 19 17 16 21 21 C 1.53125 * 117.54595 * 248.47437 * 19 17 16 22 22 C 1.52460 * 59.85567 * 252.56397 * 21 19 17 23 23 C 1.53255 * 128.58417 * 242.39860 * 22 21 19 24 24 C 1.53886 * 86.88455 * 194.88651 * 23 22 21 25 25 C 1.53419 * 128.60798 * 117.51322 * 22 21 19 26 26 C 1.46930 * 118.73973 * 53.86024 * 16 15 14 27 27 C 1.53030 * 109.46345 * 270.07069 * 13 12 11 28 28 C 1.47815 * 134.45430 * 359.86783 * 9 7 2 29 29 H 0.97005 * 119.99709 * 359.97438 * 1 2 3 30 30 H 1.09000 * 113.77251 * 41.05935 * 10 9 7 31 31 H 1.09001 * 113.77333 * 269.66043 * 10 9 7 32 32 H 1.08998 * 113.74420 * 269.15552 * 11 10 9 33 33 H 1.09002 * 109.44774 * 30.03990 * 13 12 11 34 34 H 1.08995 * 109.49726 * 61.43611 * 14 13 12 35 35 H 1.09001 * 109.49426 * 301.33635 * 14 13 12 36 36 H 1.08998 * 109.58606 * 185.57251 * 15 14 13 37 37 H 1.09002 * 109.58594 * 65.15100 * 15 14 13 38 38 H 1.09004 * 117.51265 * 145.11284 * 21 19 17 39 39 H 1.08996 * 117.51279 * 0.02562 * 21 19 17 40 40 H 1.09009 * 113.64453 * 80.39320 * 23 22 21 41 41 H 1.08997 * 113.72782 * 309.40095 * 23 22 21 42 42 H 1.09002 * 113.58838 * 139.57331 * 24 23 22 43 43 H 1.08999 * 113.58827 * 270.31714 * 24 23 22 44 44 H 1.08994 * 113.64612 * 50.62436 * 25 22 21 45 45 H 1.09008 * 113.69177 * 279.57567 * 25 22 21 46 46 H 1.08995 * 109.59055 * 65.92746 * 26 16 15 47 47 H 1.09000 * 109.58431 * 186.35553 * 26 16 15 48 48 H 1.09010 * 109.49767 * 298.56408 * 27 13 12 49 49 H 1.08997 * 109.49890 * 58.66161 * 27 13 12 50 50 H 1.08999 * 113.77012 * 90.38225 * 28 9 7 51 51 H 1.08997 * 113.83833 * 318.91408 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.7201 -3.8101 0.0005 11 6 0.3470 -4.0829 0.6409 12 8 -0.3166 -5.2323 0.1113 13 6 -1.2050 -5.8668 1.0334 14 6 -2.3512 -6.5279 0.2644 15 6 -3.3198 -7.1772 1.2579 16 7 -2.5655 -8.0944 2.1229 17 6 -2.9458 -9.3804 2.2574 18 8 -3.9195 -9.7902 1.6616 19 6 -2.1621 -10.3088 3.1489 20 1 -1.7301 -9.8523 4.0395 21 6 -1.3722 -11.4359 2.4778 22 6 -2.6426 -11.7515 3.2595 23 6 -2.8017 -12.6122 4.5175 24 6 -4.3125 -12.6116 4.2249 25 6 -3.9534 -12.3638 2.7491 26 6 -1.3921 -7.5817 2.8434 27 6 -0.4419 -6.9292 1.8278 28 6 -0.1058 -2.7570 0.0025 29 1 -0.4850 0.8401 0.0004 30 1 2.5624 -4.0324 0.6557 31 1 1.8319 -4.2351 -0.9970 32 1 0.3594 -4.0639 1.7307 33 1 -1.6095 -5.1219 1.7187 34 1 -1.9495 -7.2901 -0.4031 35 1 -2.8799 -5.7743 -0.3194 36 1 -4.0834 -7.7329 0.7137 37 1 -3.7908 -6.4054 1.8666 38 1 -0.4207 -11.7206 2.9270 39 1 -1.4191 -11.5057 1.3911 40 1 -2.5347 -12.0938 5.4385 41 1 -2.3410 -13.5967 4.4366 42 1 -4.7914 -13.5747 4.4015 43 1 -4.8464 -11.7824 4.6890 44 1 -3.8136 -13.2788 2.1736 45 1 -4.6084 -11.6466 2.2542 46 1 -1.7091 -6.8422 3.5787 47 1 -0.8834 -8.4045 3.3456 48 1 -0.0581 -7.6878 1.1454 49 1 0.3884 -6.4614 2.3567 50 1 -0.5311 -2.8721 -0.9944 51 1 -0.7189 -2.1399 0.6593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093579943.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:35 Heat of formation + Delta-G solvation = 10.126422 kcal Electronic energy + Delta-G solvation = -28982.129831 eV Core-core repulsion = 25077.374217 eV Total energy + Delta-G solvation = -3904.755614 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.67278 -40.44681 -39.64712 -38.39351 -36.74486 -34.73229 -34.14668 -32.69839 -32.07573 -29.45273 -26.80555 -26.57834 -26.49272 -25.07753 -24.77884 -23.80961 -23.52422 -21.88506 -21.19428 -20.16125 -19.03594 -18.83228 -18.56522 -17.79482 -17.01706 -16.83019 -16.38367 -16.13570 -15.99934 -15.89262 -15.66166 -15.42008 -15.17025 -14.78837 -14.62672 -14.22534 -13.84094 -13.73841 -13.40798 -13.31737 -13.24011 -13.16092 -12.89258 -12.84253 -12.81985 -12.73693 -12.42469 -12.30281 -12.25256 -12.22137 -11.93589 -11.78094 -11.46684 -11.43849 -11.27134 -10.98758 -10.89814 -10.75833 -10.43369 -10.21124 -9.74011 -8.98390 -7.93619 -5.28869 1.44036 1.45492 1.47047 1.57529 1.89636 2.41134 2.70466 2.81958 3.26409 3.28133 3.44591 3.59927 3.71134 3.74923 3.83815 3.88751 3.91662 3.98565 4.00786 4.06163 4.13747 4.18824 4.30154 4.39199 4.48985 4.54918 4.57660 4.67461 4.76653 4.76935 4.83098 4.84647 4.86403 4.87562 4.91989 4.93541 4.96702 5.04833 5.10255 5.14412 5.20895 5.23073 5.29328 5.35847 5.43155 5.48056 5.52326 5.53822 5.87319 6.36894 6.46070 6.87833 7.14779 7.56412 8.51305 9.23738 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.035395 B = 0.001915 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.871256 B =14618.873160 C =14891.971578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.294 1.294 6 H -0.289 1.289 7 C -0.235 4.235 8 H 0.089 0.911 9 N -0.638 5.638 10 C 0.121 3.879 11 C 0.073 3.927 12 O -0.384 6.384 13 C 0.082 3.918 14 C -0.123 4.123 15 C 0.119 3.881 16 N -0.609 5.609 17 C 0.539 3.461 18 O -0.576 6.576 19 C -0.168 4.168 20 H 0.150 0.850 21 C -0.128 4.128 22 C -0.137 4.137 23 C -0.086 4.086 24 C -0.137 4.137 25 C -0.117 4.117 26 C 0.110 3.890 27 C -0.148 4.148 28 C 0.142 3.858 29 H 0.249 0.751 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.132 0.868 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.116 0.884 48 H 0.069 0.931 49 H 0.089 0.911 50 H 0.010 0.990 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.452 -26.285 12.059 29.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.262 4.262 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.221 1.221 6 H -0.216 1.216 7 C -0.363 4.363 8 H 0.107 0.893 9 N -0.367 5.367 10 C -0.004 4.004 11 C 0.014 3.986 12 O -0.302 6.302 13 C 0.025 3.975 14 C -0.161 4.161 15 C -0.004 4.004 16 N -0.341 5.341 17 C 0.329 3.671 18 O -0.456 6.456 19 C -0.189 4.189 20 H 0.168 0.832 21 C -0.165 4.165 22 C -0.137 4.137 23 C -0.123 4.123 24 C -0.174 4.174 25 C -0.155 4.155 26 C -0.011 4.011 27 C -0.186 4.186 28 C 0.016 3.984 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.150 0.850 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.121 0.879 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.082 0.918 46 H 0.105 0.895 47 H 0.134 0.866 48 H 0.088 0.912 49 H 0.108 0.892 50 H 0.028 0.972 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.883 -26.244 11.562 29.090 hybrid contribution 0.032 1.666 -0.613 1.776 sum -4.852 -24.577 10.949 27.340 Atomic orbital electron populations 1.70034 1.06610 1.25705 1.58022 1.25722 0.96642 1.01159 1.02721 0.84934 0.78268 0.78916 0.76732 1.18624 1.22130 1.21558 1.19476 0.90962 0.82875 1.42945 0.89325 1.46089 1.03580 1.00780 1.86252 1.22860 0.95754 0.83376 0.98407 1.24390 0.92763 0.83787 0.97660 1.87942 1.59342 1.42535 1.40366 1.22253 0.89988 0.94139 0.91152 1.21893 0.95864 1.00101 0.98273 1.21512 0.93938 0.92515 0.92395 1.48227 1.29986 1.09501 1.46411 1.20239 0.83816 0.81921 0.81103 1.90616 1.29482 1.76034 1.49500 1.22169 1.04751 0.89614 1.02355 0.83206 1.22919 0.96534 0.97801 0.99265 1.22330 0.96359 0.94430 1.00595 1.22495 0.95599 0.99353 0.94846 1.22738 0.96905 1.02042 0.95764 1.22664 0.95267 1.00156 0.97374 1.22051 0.84851 1.00487 0.93751 1.22455 0.98939 0.98592 0.98632 1.22689 0.87300 0.91818 0.96551 0.94172 0.91181 0.94017 0.88199 0.91709 0.91869 0.90346 0.89778 0.89975 0.85020 0.89671 0.90232 0.87929 0.90214 0.91112 0.89652 0.91766 0.89529 0.86639 0.91218 0.89209 0.97186 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.29 11.39 21.65 0.25 -58.05 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 3 Si 0.98 45.69 29.55 68.60 2.03 47.72 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 6 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 7 C -0.23 -13.28 10.70 84.03 0.90 -12.38 16 8 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 9 N -0.64 -33.50 3.70 -720.68 -2.67 -36.17 16 10 C 0.12 4.95 8.77 86.49 0.76 5.71 16 11 C 0.07 2.71 4.30 31.26 0.13 2.85 16 12 O -0.38 -12.73 10.01 -148.98 -1.49 -14.22 16 13 C 0.08 2.04 2.45 30.62 0.07 2.11 16 14 C -0.12 -2.90 5.73 30.67 0.18 -2.73 16 15 C 0.12 2.52 6.43 86.36 0.56 3.07 16 16 N -0.61 -11.78 2.97 -818.07 -2.43 -14.21 16 17 C 0.54 11.82 7.48 87.66 0.66 12.47 16 18 O -0.58 -16.91 13.51 -3.04 -0.04 -16.95 16 19 C -0.17 -2.52 4.97 -11.68 -0.06 -2.57 16 20 H 0.15 1.42 6.80 -2.39 -0.02 1.41 16 21 C -0.13 -1.68 10.24 30.46 0.31 -1.37 16 22 C -0.14 -2.04 2.88 -52.32 -0.15 -2.19 16 23 C -0.09 -0.89 8.10 30.98 0.25 -0.64 16 24 C -0.14 -1.84 8.07 31.19 0.25 -1.59 16 25 C -0.12 -2.11 7.64 31.04 0.24 -1.87 16 26 C 0.11 1.54 6.33 86.51 0.55 2.09 16 27 C -0.15 -2.72 5.71 30.82 0.18 -2.54 16 28 C 0.14 7.02 7.36 86.45 0.64 7.65 16 29 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 30 H 0.07 2.53 8.14 -2.39 -0.02 2.52 16 31 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.10 3.35 7.80 -2.39 -0.02 3.33 16 33 H 0.06 1.59 7.74 -2.39 -0.02 1.57 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.08 2.01 7.01 -2.39 -0.02 1.99 16 37 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.13 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 40 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 41 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.06 1.58 5.83 -2.38 -0.01 1.56 16 46 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 47 H 0.12 1.03 5.66 -2.39 -0.01 1.02 16 48 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 49 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 51 H 0.05 2.46 7.16 -2.39 -0.02 2.45 16 Total: -1.00 -73.37 399.54 2.47 -70.89 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.90 Total: 16.45 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 5.92 Total: 4.53 kcal Atomic # 7 Polarization: -103.57 SS G_CDS: -4.85 Total: -108.42 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -1.53 Total: -31.17 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -73.37 2.47 -70.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093579943.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.021 kcal (2) G-P(sol) polarization free energy of solvation -73.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds