Wall clock time and date at job start Tue Mar 31 2020 17:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47081 * 2 1 4 4 C 1.50697 * 109.46821 * 119.99602 * 2 1 3 5 5 O 1.21283 * 119.99883 * 26.68738 * 4 2 1 6 6 N 1.34779 * 120.00126 * 206.68826 * 4 2 1 7 7 C 1.46918 * 120.62805 * 4.43295 * 6 4 2 8 8 C 1.52762 * 109.00795 * 233.58650 * 7 6 4 9 9 C 1.53038 * 109.38372 * 305.58732 * 8 7 6 10 10 N 1.46494 * 109.45057 * 181.25438 * 9 8 7 11 11 C 1.36943 * 120.00078 * 299.93960 * 10 9 8 12 12 H 1.08000 * 120.00089 * 323.33976 * 11 10 9 13 13 C 1.38815 * 119.99956 * 143.32992 * 11 10 9 14 14 N 1.31621 * 120.00014 * 157.91952 * 13 11 10 15 15 Si 1.86800 * 119.99970 * 337.92442 * 13 11 10 16 16 H 1.48504 * 109.47023 * 91.88919 * 15 13 11 17 17 H 1.48505 * 109.47142 * 211.88344 * 15 13 11 18 18 H 1.48495 * 109.47387 * 331.88421 * 15 13 11 19 19 C 1.46496 * 120.00272 * 119.93935 * 10 9 8 20 20 C 1.53009 * 109.47001 * 83.75795 * 19 10 9 21 21 O 1.42897 * 109.46906 * 65.57717 * 20 19 10 22 22 C 1.53041 * 109.53423 * 61.24260 * 9 8 7 23 23 C 1.46926 * 120.62861 * 184.71815 * 6 4 2 24 24 C 1.53001 * 109.47322 * 239.99859 * 2 1 3 25 25 C 1.52992 * 109.47051 * 65.00084 * 24 2 1 26 26 F 1.39901 * 109.47048 * 185.00126 * 24 2 1 27 27 F 1.39899 * 109.46624 * 305.00292 * 24 2 1 28 28 H 1.09007 * 109.46860 * 53.99847 * 1 2 3 29 29 H 1.08999 * 109.47146 * 173.99325 * 1 2 3 30 30 H 1.08996 * 109.47907 * 293.99940 * 1 2 3 31 31 H 1.09003 * 109.59175 * 353.42209 * 7 6 4 32 32 H 1.08999 * 109.58723 * 113.84487 * 7 6 4 33 33 H 1.09003 * 109.56198 * 185.55486 * 8 7 6 34 34 H 1.08998 * 109.35988 * 65.50596 * 8 7 6 35 35 H 1.08994 * 109.46328 * 301.22125 * 9 8 7 36 36 H 0.97002 * 120.00191 * 180.02562 * 14 13 11 37 37 H 1.08999 * 109.47470 * 203.75670 * 19 10 9 38 38 H 1.08995 * 109.47168 * 323.76181 * 19 10 9 39 39 H 1.08999 * 109.46978 * 185.57066 * 20 19 10 40 40 H 1.08994 * 109.46926 * 305.57396 * 20 19 10 41 41 H 0.96702 * 114.00198 * 180.02562 * 21 20 19 42 42 H 1.09008 * 109.49537 * 178.68396 * 22 9 8 43 43 H 1.09001 * 109.50120 * 58.58853 * 22 9 8 44 44 H 1.09000 * 109.58673 * 246.15019 * 23 6 4 45 45 H 1.08994 * 109.58902 * 6.43471 * 23 6 4 46 46 H 1.09003 * 109.46985 * 180.02562 * 25 24 2 47 47 H 1.09001 * 109.47276 * 299.99829 * 25 24 2 48 48 H 1.08998 * 109.47507 * 60.00005 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 1.3496 -1.5611 1.7607 6 7 3.2401 -0.4002 1.7419 7 6 4.0366 0.6938 1.1698 8 6 5.4267 0.1664 0.8189 9 6 6.0498 -0.4852 2.0555 10 7 7.3949 -0.9649 1.7286 11 6 7.5680 -1.8978 0.7412 12 1 6.8413 -2.6859 0.6094 13 6 8.6773 -1.8305 -0.0905 14 7 9.0894 -2.9067 -0.7264 15 14 9.5855 -0.2126 -0.3070 16 1 10.6852 -0.1253 0.6871 17 1 10.1512 -0.1421 -1.6783 18 1 8.6423 0.9159 -0.1022 19 6 8.5548 -0.4466 2.4580 20 6 8.7248 -1.2243 3.7647 21 8 9.0542 -2.5834 3.4706 22 6 5.1832 -1.6641 2.5043 23 6 3.7879 -1.1538 2.8779 24 6 2.0401 -0.7213 -1.2492 25 6 1.6354 0.0688 -2.4952 26 9 3.4343 -0.8217 -1.1931 27 9 1.4821 -2.0029 -1.3081 28 1 -0.3633 0.6041 -0.8315 29 1 -0.3633 -1.0220 -0.1075 30 1 -0.3635 0.4179 0.9387 31 1 3.5506 1.0671 0.2684 32 1 4.1276 1.4993 1.8985 33 1 6.0566 0.9913 0.4859 34 1 5.3423 -0.5722 0.0218 35 1 6.1112 0.2474 2.8601 36 1 9.8648 -2.8598 -1.3073 37 1 9.4499 -0.5628 1.8470 38 1 8.4016 0.6093 2.6810 39 1 9.5252 -0.7757 4.3530 40 1 7.7943 -1.1903 4.3313 41 1 9.1766 -3.1368 4.2541 42 1 5.6399 -2.1421 3.3710 43 1 5.1011 -2.3856 1.6914 44 1 3.8583 -0.5022 3.7489 45 1 3.1365 -1.9978 3.1048 46 1 1.9983 -0.4453 -3.3852 47 1 0.5490 0.1470 -2.5390 48 1 2.0699 1.0674 -2.4494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098480101.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:42 Heat of formation + Delta-G solvation = -152.742917 kcal Electronic energy + Delta-G solvation = -32185.390546 eV Core-core repulsion = 27719.342858 eV Total energy + Delta-G solvation = -4466.047688 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.93253 -46.89817 -40.12025 -37.84614 -36.31907 -34.80815 -34.69138 -31.97252 -30.98050 -30.74387 -29.80999 -27.94093 -25.97043 -24.72522 -23.18501 -22.86482 -21.95144 -20.92210 -19.74467 -18.88323 -17.80461 -17.34257 -16.75347 -16.72280 -16.37699 -16.08783 -15.39095 -15.23164 -14.72876 -14.64986 -14.19807 -13.75297 -13.71725 -13.59425 -13.31238 -13.22404 -13.01855 -12.91392 -12.86203 -12.79080 -12.67066 -12.47304 -12.25711 -12.14533 -11.94627 -11.79678 -11.63874 -11.57312 -11.09054 -10.92261 -10.72613 -10.68382 -10.50311 -10.25828 -9.90437 -9.65099 -9.63078 -9.44127 -9.10927 -8.48618 -8.32364 -6.75487 -5.82404 -3.22568 2.49933 3.04804 3.36148 3.50125 3.53518 3.69447 3.94994 4.18482 4.22438 4.62380 4.65368 4.76729 4.82794 4.85476 5.08432 5.14849 5.26966 5.36009 5.43251 5.45215 5.47485 5.49625 5.51719 5.65886 5.67581 5.72834 5.84225 5.88092 5.92131 5.97535 6.04914 6.15355 6.18101 6.19485 6.35375 6.47760 6.57955 6.76348 6.84741 7.03944 7.13487 7.50980 8.16758 8.20896 8.43770 8.54812 9.09922 9.86604 10.21874 11.34019 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.015211 B = 0.004370 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.386464 B = 6405.139633 C = 7307.916031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.158 4.158 3 H 0.119 0.881 4 C 0.518 3.482 5 O -0.535 6.535 6 N -0.597 5.597 7 C 0.108 3.892 8 C -0.144 4.144 9 C 0.181 3.819 10 N -0.592 5.592 11 C -0.243 4.243 12 H 0.077 0.923 13 C 0.038 3.962 14 N -0.900 5.900 15 Si 0.873 3.127 16 H -0.289 1.289 17 H -0.305 1.305 18 H -0.272 1.272 19 C 0.128 3.872 20 C 0.062 3.938 21 O -0.537 6.537 22 C -0.138 4.138 23 C 0.115 3.885 24 C 0.296 3.704 25 C -0.194 4.194 26 F -0.183 7.183 27 F -0.192 7.192 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.259 0.741 37 H 0.069 0.931 38 H 0.047 0.953 39 H 0.022 0.978 40 H 0.031 0.969 41 H 0.354 0.646 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.036 11.414 3.352 18.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.180 4.180 3 H 0.137 0.863 4 C 0.305 3.695 5 O -0.412 6.412 6 N -0.329 5.329 7 C -0.015 4.015 8 C -0.183 4.183 9 C 0.074 3.926 10 N -0.313 5.313 11 C -0.371 4.371 12 H 0.094 0.906 13 C -0.161 4.161 14 N -0.542 5.542 15 Si 0.704 3.296 16 H -0.217 1.217 17 H -0.233 1.233 18 H -0.197 1.197 19 C 0.002 3.998 20 C -0.019 4.019 21 O -0.339 6.339 22 C -0.178 4.178 23 C -0.008 4.008 24 C 0.259 3.741 25 C -0.251 4.251 26 F -0.163 7.163 27 F -0.173 7.173 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.040 0.960 40 H 0.049 0.951 41 H 0.197 0.803 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.109 0.891 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.286 11.077 2.881 18.305 hybrid contribution 1.023 0.634 0.423 1.276 sum -13.263 11.710 3.304 17.998 Atomic orbital electron populations 1.21670 0.90392 1.04238 1.02942 1.22481 1.00442 1.02039 0.93040 0.86287 1.20054 0.81436 0.83174 0.84866 1.90680 1.56256 1.33090 1.61179 1.48096 1.17116 1.34383 1.33307 1.21830 0.93329 0.88496 0.97880 1.22321 0.92741 1.01715 1.01548 1.20281 0.85636 0.92764 0.93896 1.44080 0.99527 1.48215 1.39469 1.18525 1.09218 1.03183 1.06189 0.90593 1.25352 0.97683 0.96152 0.96918 1.69879 1.25217 1.26906 1.32205 0.87061 0.79564 0.87314 0.75670 1.21730 1.23327 1.19671 1.21400 0.92701 0.93749 0.91919 1.22903 0.96201 0.84127 0.98671 1.86917 1.92882 1.20269 1.33787 1.22331 0.92842 1.00317 1.02301 1.21702 0.95929 0.96092 0.87058 1.20829 0.75775 0.80924 0.96537 1.22815 1.04423 1.01642 0.96243 1.93142 1.29492 1.96359 1.97336 1.93047 1.84979 1.41912 1.97362 0.91242 0.90467 0.91056 0.90645 0.91774 0.91392 0.89391 0.93318 0.93091 0.91268 0.93441 0.96000 0.95074 0.80297 0.91272 0.90744 0.92054 0.89633 0.89492 0.89084 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 8.17 37.16 0.30 -0.98 16 2 C -0.16 -1.81 1.73 -91.77 -0.16 -1.97 16 3 H 0.12 1.02 6.18 -51.93 -0.32 0.70 16 4 C 0.52 8.01 6.29 -10.99 -0.07 7.94 16 5 O -0.54 -9.96 15.67 5.55 0.09 -9.87 16 6 N -0.60 -8.92 2.94 -173.04 -0.51 -9.43 16 7 C 0.11 1.43 5.35 -3.94 -0.02 1.40 16 8 C -0.14 -2.49 5.18 -26.83 -0.14 -2.63 16 9 C 0.18 3.35 2.59 -67.89 -0.18 3.17 16 10 N -0.59 -13.39 2.00 -165.62 -0.33 -13.72 16 11 C -0.24 -6.67 8.54 -15.06 -0.13 -6.80 16 12 H 0.08 2.34 7.02 -52.49 -0.37 1.97 16 13 C 0.04 1.12 5.28 -17.43 -0.09 1.03 16 14 N -0.90 -28.17 13.97 55.49 0.78 -27.39 16 15 Si 0.87 22.20 25.12 -169.99 -4.27 17.93 16 16 H -0.29 -7.24 6.51 56.52 0.37 -6.87 16 17 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 C 0.13 2.71 4.60 -4.04 -0.02 2.69 16 20 C 0.06 1.13 7.38 37.16 0.27 1.41 16 21 O -0.54 -11.25 13.46 -35.23 -0.47 -11.73 16 22 C -0.14 -2.49 5.30 -26.61 -0.14 -2.63 16 23 C 0.11 1.76 6.42 -3.71 -0.02 1.74 16 24 C 0.30 3.79 1.76 -26.73 -0.05 3.75 16 25 C -0.19 -1.62 9.14 37.15 0.34 -1.28 16 26 F -0.18 -2.96 13.35 2.25 0.03 -2.93 16 27 F -0.19 -3.01 16.07 2.25 0.04 -2.97 16 28 H 0.07 0.44 6.87 -51.92 -0.36 0.08 16 29 H 0.08 0.88 7.41 -51.93 -0.38 0.49 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.85 4.82 -51.93 -0.25 0.60 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.09 1.82 6.18 -51.93 -0.32 1.50 16 35 H 0.05 0.80 7.88 -51.93 -0.41 0.39 16 36 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 37 H 0.07 1.67 3.36 -51.93 -0.17 1.50 16 38 H 0.05 0.87 8.05 -51.93 -0.42 0.45 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.35 5.39 9.12 45.56 0.42 5.81 16 42 H 0.07 1.25 8.14 -51.92 -0.42 0.82 16 43 H 0.07 1.61 7.05 -51.93 -0.37 1.25 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.09 1.41 7.03 -51.93 -0.37 1.04 16 46 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.09 0.57 6.70 -51.93 -0.35 0.22 16 48 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 370.30 15.07 5.58 5.58 Total: -1.00 -36.04 370.30 -5.81 -41.85 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.64 Total: 5.83 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -0.10 Total: 6.84 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.06 Total: -50.54 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.39 Total: -21.60 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.07 Total: -5.90 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.27 Total: 17.93 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.04 -5.81 -41.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098480101.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.894 kcal (2) G-P(sol) polarization free energy of solvation -36.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds