Wall clock time and date at job start Tue Mar 31 2020 17:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47081 * 2 1 4 4 C 1.50697 * 109.46821 * 119.99602 * 2 1 3 5 5 O 1.21283 * 119.99883 * 26.68738 * 4 2 1 6 6 N 1.34779 * 120.00126 * 206.68826 * 4 2 1 7 7 C 1.46918 * 120.62805 * 4.43295 * 6 4 2 8 8 C 1.52762 * 109.00795 * 233.58650 * 7 6 4 9 9 C 1.53038 * 109.38372 * 305.58732 * 8 7 6 10 10 N 1.46494 * 109.45057 * 181.25438 * 9 8 7 11 11 C 1.36943 * 120.00078 * 299.93960 * 10 9 8 12 12 H 1.08000 * 120.00089 * 323.33976 * 11 10 9 13 13 C 1.38815 * 119.99956 * 143.32992 * 11 10 9 14 14 N 1.31621 * 120.00014 * 157.91952 * 13 11 10 15 15 Si 1.86800 * 119.99970 * 337.92442 * 13 11 10 16 16 H 1.48504 * 109.47023 * 91.88919 * 15 13 11 17 17 H 1.48505 * 109.47142 * 211.88344 * 15 13 11 18 18 H 1.48495 * 109.47387 * 331.88421 * 15 13 11 19 19 C 1.46496 * 120.00272 * 119.93935 * 10 9 8 20 20 C 1.53009 * 109.47001 * 83.75795 * 19 10 9 21 21 O 1.42897 * 109.46906 * 65.57717 * 20 19 10 22 22 C 1.53041 * 109.53423 * 61.24260 * 9 8 7 23 23 C 1.46926 * 120.62861 * 184.71815 * 6 4 2 24 24 C 1.53001 * 109.47322 * 239.99859 * 2 1 3 25 25 C 1.52992 * 109.47051 * 65.00084 * 24 2 1 26 26 F 1.39901 * 109.47048 * 185.00126 * 24 2 1 27 27 F 1.39899 * 109.46624 * 305.00292 * 24 2 1 28 28 H 1.09007 * 109.46860 * 53.99847 * 1 2 3 29 29 H 1.08999 * 109.47146 * 173.99325 * 1 2 3 30 30 H 1.08996 * 109.47907 * 293.99940 * 1 2 3 31 31 H 1.09003 * 109.59175 * 353.42209 * 7 6 4 32 32 H 1.08999 * 109.58723 * 113.84487 * 7 6 4 33 33 H 1.09003 * 109.56198 * 185.55486 * 8 7 6 34 34 H 1.08998 * 109.35988 * 65.50596 * 8 7 6 35 35 H 1.08994 * 109.46328 * 301.22125 * 9 8 7 36 36 H 0.97002 * 120.00191 * 180.02562 * 14 13 11 37 37 H 1.08999 * 109.47470 * 203.75670 * 19 10 9 38 38 H 1.08995 * 109.47168 * 323.76181 * 19 10 9 39 39 H 1.08999 * 109.46978 * 185.57066 * 20 19 10 40 40 H 1.08994 * 109.46926 * 305.57396 * 20 19 10 41 41 H 0.96702 * 114.00198 * 180.02562 * 21 20 19 42 42 H 1.09008 * 109.49537 * 178.68396 * 22 9 8 43 43 H 1.09001 * 109.50120 * 58.58853 * 22 9 8 44 44 H 1.09000 * 109.58673 * 246.15019 * 23 6 4 45 45 H 1.08994 * 109.58902 * 6.43471 * 23 6 4 46 46 H 1.09003 * 109.46985 * 180.02562 * 25 24 2 47 47 H 1.09001 * 109.47276 * 299.99829 * 25 24 2 48 48 H 1.08998 * 109.47507 * 60.00005 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 1.3496 -1.5611 1.7607 6 7 3.2401 -0.4002 1.7419 7 6 4.0366 0.6938 1.1698 8 6 5.4267 0.1664 0.8189 9 6 6.0498 -0.4852 2.0555 10 7 7.3949 -0.9649 1.7286 11 6 7.5680 -1.8978 0.7412 12 1 6.8413 -2.6859 0.6094 13 6 8.6773 -1.8305 -0.0905 14 7 9.0894 -2.9067 -0.7264 15 14 9.5855 -0.2126 -0.3070 16 1 10.6852 -0.1253 0.6871 17 1 10.1512 -0.1421 -1.6783 18 1 8.6423 0.9159 -0.1022 19 6 8.5548 -0.4466 2.4580 20 6 8.7248 -1.2243 3.7647 21 8 9.0542 -2.5834 3.4706 22 6 5.1832 -1.6641 2.5043 23 6 3.7879 -1.1538 2.8779 24 6 2.0401 -0.7213 -1.2492 25 6 1.6354 0.0688 -2.4952 26 9 3.4343 -0.8217 -1.1931 27 9 1.4821 -2.0029 -1.3081 28 1 -0.3633 0.6041 -0.8315 29 1 -0.3633 -1.0220 -0.1075 30 1 -0.3635 0.4179 0.9387 31 1 3.5506 1.0671 0.2684 32 1 4.1276 1.4993 1.8985 33 1 6.0566 0.9913 0.4859 34 1 5.3423 -0.5722 0.0218 35 1 6.1112 0.2474 2.8601 36 1 9.8648 -2.8598 -1.3073 37 1 9.4499 -0.5628 1.8470 38 1 8.4016 0.6093 2.6810 39 1 9.5252 -0.7757 4.3530 40 1 7.7943 -1.1903 4.3313 41 1 9.1766 -3.1368 4.2541 42 1 5.6399 -2.1421 3.3710 43 1 5.1011 -2.3856 1.6914 44 1 3.8583 -0.5022 3.7489 45 1 3.1365 -1.9978 3.1048 46 1 1.9983 -0.4453 -3.3852 47 1 0.5490 0.1470 -2.5390 48 1 2.0699 1.0674 -2.4494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098480101.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:41 Heat of formation + Delta-G solvation = -180.747669 kcal Electronic energy + Delta-G solvation = -32186.604923 eV Core-core repulsion = 27719.342858 eV Total energy + Delta-G solvation = -4467.262065 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.03169 -48.03947 -41.33343 -39.32910 -37.78432 -36.33347 -35.72346 -33.86577 -32.55691 -32.06673 -30.61014 -29.60863 -27.16038 -26.12854 -24.68445 -24.17178 -23.19111 -22.34636 -21.21790 -20.11063 -18.95726 -18.53635 -18.34682 -18.02170 -17.76881 -17.31312 -17.09831 -16.51356 -16.35529 -15.88317 -15.42388 -15.37798 -14.90530 -14.85292 -14.69988 -14.60017 -14.46687 -14.20010 -14.13503 -13.86920 -13.76822 -13.56454 -13.48781 -13.30643 -13.22894 -13.04498 -12.84896 -12.77405 -12.53222 -12.44505 -12.26545 -12.08661 -11.89507 -11.77532 -11.68044 -11.32849 -11.21474 -10.80493 -10.66586 -10.47209 -9.66432 -8.65842 -8.04694 -5.40391 1.33378 1.34281 1.42862 1.53909 1.94716 2.51978 2.75804 3.07860 3.11869 3.25438 3.32974 3.37172 3.70594 3.73992 3.91059 4.02859 4.06524 4.16291 4.22059 4.30579 4.41901 4.46750 4.54153 4.60287 4.63865 4.67274 4.71503 4.75209 4.77691 4.78674 4.80882 4.81964 4.91229 5.04626 5.08110 5.09658 5.18585 5.25983 5.44026 5.59030 5.66411 6.07497 6.30180 6.35066 7.03515 7.09458 7.19805 7.78744 8.15048 9.17015 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.015211 B = 0.004370 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.386464 B = 6405.139633 C = 7307.916031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.150 4.150 3 H 0.159 0.841 4 C 0.506 3.494 5 O -0.577 6.577 6 N -0.600 5.600 7 C 0.113 3.887 8 C -0.139 4.139 9 C 0.176 3.824 10 N -0.602 5.602 11 C -0.210 4.210 12 H 0.020 0.980 13 C -0.031 4.031 14 N -0.962 5.962 15 Si 0.945 3.055 16 H -0.281 1.281 17 H -0.320 1.320 18 H -0.243 1.243 19 C 0.115 3.885 20 C 0.062 3.938 21 O -0.581 6.581 22 C -0.126 4.126 23 C 0.122 3.878 24 C 0.276 3.724 25 C -0.186 4.186 26 F -0.209 7.209 27 F -0.218 7.218 28 H 0.109 0.891 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.042 0.958 35 H 0.091 0.909 36 H 0.254 0.746 37 H 0.038 0.962 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.376 0.624 42 H 0.065 0.935 43 H 0.018 0.982 44 H 0.100 0.900 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.116 0.884 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.137 16.405 4.865 22.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.172 4.172 3 H 0.176 0.824 4 C 0.294 3.706 5 O -0.457 6.457 6 N -0.332 5.332 7 C -0.009 4.009 8 C -0.179 4.179 9 C 0.070 3.930 10 N -0.323 5.323 11 C -0.340 4.340 12 H 0.038 0.962 13 C -0.225 4.225 14 N -0.608 5.608 15 Si 0.775 3.225 16 H -0.209 1.209 17 H -0.250 1.250 18 H -0.166 1.166 19 C -0.010 4.010 20 C -0.018 4.018 21 O -0.386 6.386 22 C -0.166 4.166 23 C -0.001 4.001 24 C 0.239 3.761 25 C -0.243 4.243 26 F -0.190 7.190 27 F -0.199 7.199 28 H 0.128 0.872 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.109 0.891 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.223 0.777 42 H 0.084 0.916 43 H 0.037 0.963 44 H 0.118 0.882 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.135 0.865 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.404 16.120 4.445 22.736 hybrid contribution 1.310 -1.059 0.058 1.686 sum -14.094 15.062 4.503 21.113 Atomic orbital electron populations 1.21711 0.88805 1.03444 1.04918 1.22607 1.01681 1.03001 0.89879 0.82394 1.20876 0.81275 0.82799 0.85611 1.90657 1.57559 1.34914 1.62585 1.48251 1.17238 1.34627 1.33071 1.21966 0.90472 0.88321 1.00179 1.22200 0.95650 1.00591 0.99452 1.20554 0.83342 0.93374 0.95700 1.44169 1.01883 1.47600 1.38664 1.18171 1.06927 1.02240 1.06671 0.96237 1.26025 0.99535 0.99446 0.97474 1.70059 1.26681 1.29518 1.34586 0.85879 0.78770 0.83216 0.74624 1.20868 1.24953 1.16644 1.21622 0.90514 0.96467 0.92398 1.22911 0.98480 0.82755 0.97632 1.86847 1.93193 1.22198 1.36381 1.22154 0.95084 0.99326 1.00028 1.21579 0.93364 0.96536 0.88619 1.21662 0.74399 0.80454 0.99557 1.22870 1.06244 1.01921 0.93240 1.93099 1.31805 1.96468 1.97618 1.92994 1.85217 1.44083 1.97617 0.87218 0.93179 0.90572 0.88233 0.87612 0.90825 0.93944 0.89096 0.93703 0.94432 0.89245 0.92557 0.93049 0.77737 0.91642 0.96286 0.88226 0.91544 0.90206 0.86498 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.17 71.98 0.59 -1.56 16 2 C -0.15 -3.06 1.73 -11.54 -0.02 -3.08 16 3 H 0.16 1.91 6.18 -2.39 -0.01 1.90 16 4 C 0.51 15.16 6.29 87.66 0.55 15.71 16 5 O -0.58 -21.85 15.67 -3.04 -0.05 -21.90 16 6 N -0.60 -16.86 2.94 -819.76 -2.41 -19.27 16 7 C 0.11 2.54 5.35 86.22 0.46 3.00 16 8 C -0.14 -4.56 5.18 30.53 0.16 -4.40 16 9 C 0.18 6.14 2.59 45.02 0.12 6.26 16 10 N -0.60 -26.71 2.00 -677.90 -1.35 -28.06 16 11 C -0.21 -12.04 8.54 84.03 0.72 -11.32 16 12 H 0.02 1.33 7.02 -2.91 -0.02 1.31 16 13 C -0.03 -1.86 5.28 84.86 0.45 -1.41 16 14 N -0.96 -63.85 13.97 21.65 0.30 -63.55 16 15 Si 0.95 46.77 25.12 68.60 1.72 48.49 16 16 H -0.28 -13.39 6.51 99.48 0.65 -12.74 16 17 H -0.32 -16.43 7.11 99.48 0.71 -15.72 16 18 H -0.24 -10.70 7.11 99.48 0.71 -9.99 16 19 C 0.11 4.52 4.60 86.38 0.40 4.91 16 20 C 0.06 2.09 7.38 71.99 0.53 2.62 16 21 O -0.58 -24.05 13.46 -148.98 -2.00 -26.05 16 22 C -0.13 -4.60 5.30 30.67 0.16 -4.44 16 23 C 0.12 3.60 6.42 86.36 0.55 4.16 16 24 C 0.28 6.81 1.76 30.59 0.05 6.86 16 25 C -0.19 -2.58 9.14 71.98 0.66 -1.93 16 26 F -0.21 -6.88 13.35 44.97 0.60 -6.28 16 27 F -0.22 -7.08 16.07 44.97 0.72 -6.36 16 28 H 0.11 0.88 6.87 -2.38 -0.02 0.87 16 29 H 0.05 1.10 7.41 -2.39 -0.02 1.09 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.10 1.78 4.82 -2.39 -0.01 1.77 16 32 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.04 1.79 6.18 -2.39 -0.01 1.78 16 35 H 0.09 2.48 7.88 -2.39 -0.02 2.46 16 36 H 0.25 16.13 8.31 -92.71 -0.77 15.35 16 37 H 0.04 1.74 3.36 -2.39 -0.01 1.73 16 38 H 0.09 2.77 8.05 -2.39 -0.02 2.75 16 39 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.38 11.20 9.12 -74.06 -0.68 10.52 16 42 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 43 H 0.02 0.87 7.05 -2.39 -0.02 0.86 16 44 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.07 2.23 7.03 -2.39 -0.02 2.21 16 46 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.12 1.00 6.70 -2.39 -0.02 0.99 16 48 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -88.73 370.30 3.16 -85.57 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.25 Total: 22.03 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 5.38 Total: 15.39 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -3.46 Total: -110.88 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -2.05 Total: -47.95 kcal Atomic # 9 Polarization: -13.96 SS G_CDS: 1.32 Total: -12.64 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.72 Total: 48.49 kcal Total: -88.73 3.16 -85.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098480101.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.179 kcal (2) G-P(sol) polarization free energy of solvation -88.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds