Wall clock time and date at job start Tue Mar 31 2020 19:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00160 * 2 1 4 4 H 1.48505 * 109.47029 * 239.99914 * 3 2 1 5 5 H 1.48498 * 109.47293 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46801 * 120.00158 * 3 2 1 7 7 C 1.38806 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00573 * 162.27362 * 7 2 1 9 9 N 1.36939 * 120.00346 * 342.27887 * 7 2 1 10 10 C 1.46932 * 120.64073 * 151.91318 * 9 7 2 11 11 C 1.53197 * 108.78553 * 126.37015 * 10 9 7 12 12 H 1.09000 * 109.49567 * 294.74979 * 11 10 9 13 13 N 1.46505 * 109.52526 * 174.66746 * 11 10 9 14 14 C 1.34777 * 119.99999 * 85.15636 * 13 11 10 15 15 O 1.21613 * 119.99917 * 359.97438 * 14 13 11 16 16 C 1.47105 * 119.99801 * 180.02562 * 14 13 11 17 17 C 1.32990 * 119.99790 * 172.76656 * 16 14 13 18 18 C 1.50696 * 120.00280 * 352.49272 * 17 16 14 19 19 C 1.53002 * 117.49988 * 180.49375 * 18 17 16 20 20 C 1.53000 * 117.50350 * 111.83194 * 18 17 16 21 21 C 1.53044 * 109.30428 * 54.69971 * 11 10 9 22 22 C 1.52957 * 109.55739 * 298.74550 * 21 11 10 23 23 C 1.53076 * 109.55344 * 181.29488 * 22 21 11 24 24 C 1.53113 * 109.15782 * 63.12040 * 23 22 21 25 25 O 1.42905 * 109.39694 * 57.49723 * 24 23 22 26 26 C 1.42901 * 114.13684 * 298.81784 * 25 24 23 27 27 C 1.53083 * 109.55508 * 301.06661 * 22 21 11 28 28 C 1.46953 * 120.63454 * 331.93907 * 9 7 2 29 29 H 0.97003 * 119.99453 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.58000 * 6.57999 * 10 9 7 31 31 H 1.08997 * 109.69708 * 246.22839 * 10 9 7 32 32 H 0.96997 * 119.99562 * 265.15131 * 13 11 10 33 33 H 1.07999 * 119.99697 * 352.77312 * 16 14 13 34 34 H 1.08007 * 119.99652 * 172.48856 * 17 16 14 35 35 H 1.09004 * 115.54698 * 326.15826 * 18 17 16 36 36 H 1.09008 * 117.49415 * 359.97438 * 19 18 17 37 37 H 1.09002 * 117.50150 * 145.01613 * 19 18 17 38 38 H 1.08996 * 117.50117 * 214.97935 * 20 18 17 39 39 H 1.09000 * 117.49447 * 359.97438 * 20 18 17 40 40 H 1.08998 * 109.46271 * 178.72139 * 21 11 10 41 41 H 1.08998 * 109.44271 * 58.75856 * 21 11 10 42 42 H 1.09004 * 109.52626 * 303.21940 * 23 22 21 43 43 H 1.09001 * 109.57942 * 183.05942 * 23 22 21 44 44 H 1.08992 * 109.48551 * 297.51822 * 24 23 22 45 45 H 1.09000 * 109.48461 * 177.46910 * 24 23 22 46 46 H 1.09006 * 109.47892 * 181.15249 * 26 25 24 47 47 H 1.08998 * 109.48406 * 301.19894 * 26 25 24 48 48 H 1.08998 * 109.52386 * 56.77920 * 27 22 21 49 49 H 1.09007 * 109.52094 * 176.97034 * 27 22 21 50 50 H 1.08992 * 109.58155 * 113.65244 * 28 9 7 51 51 H 1.09003 * 109.58039 * 353.24035 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0517 -1.2246 -0.2842 9 7 1.3742 -2.3598 0.3620 10 6 1.8125 -3.6546 -0.1767 11 6 2.0799 -4.6097 0.9909 12 1 2.9207 -4.2401 1.5779 13 7 2.3949 -5.9426 0.4708 14 6 3.6578 -6.2437 0.1090 15 8 4.5358 -5.4087 0.2137 16 6 3.9740 -7.5819 -0.4137 17 6 5.1837 -7.8353 -0.9045 18 6 6.1748 -6.7141 -1.0823 19 6 7.5456 -7.0683 -1.6624 20 6 7.4101 -6.7132 -0.1796 21 6 0.8339 -4.6879 1.8761 22 6 0.5218 -3.3026 2.4445 23 6 -0.7054 -3.3873 3.3555 24 6 -0.3867 -4.2980 4.5444 25 8 0.7535 -3.7893 5.2397 26 6 1.9429 -3.7340 4.4496 27 6 1.7183 -2.8006 3.2568 28 6 0.2399 -2.3308 1.2958 29 1 -0.4849 0.8401 0.0004 30 1 2.7266 -3.5192 -0.7548 31 1 1.0335 -4.0689 -0.8166 32 1 1.6946 -6.6084 0.3871 33 1 3.2236 -8.3585 -0.3989 34 1 5.4559 -8.8447 -1.1756 35 1 5.7483 -5.7481 -1.3526 36 1 7.7307 -8.1124 -1.9150 37 1 8.0211 -6.3351 -2.3140 38 1 7.7965 -5.7467 0.1438 39 1 7.5057 -7.5235 0.5433 40 1 1.0135 -5.3843 2.6951 41 1 -0.0115 -5.0357 1.2825 42 1 -1.5462 -3.7985 2.7969 43 1 -0.9608 -2.3914 3.7177 44 1 -0.1739 -5.3045 4.1846 45 1 -1.2416 -4.3263 5.2201 46 1 2.7655 -3.3562 5.0569 47 1 2.1863 -4.7332 4.0885 48 1 2.6083 -2.7929 2.6276 49 1 1.5167 -1.7916 3.6167 50 1 -0.6690 -2.6333 0.7759 51 1 0.1183 -1.3226 1.6918 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099575281.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:17 Heat of formation + Delta-G solvation = -17.068276 kcal Electronic energy + Delta-G solvation = -30768.355451 eV Core-core repulsion = 26862.420587 eV Total energy + Delta-G solvation = -3905.934865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.25220 -39.35646 -37.45465 -36.71299 -34.31113 -33.51157 -32.51667 -31.23863 -30.69362 -29.16950 -27.14119 -25.42450 -24.28332 -23.26268 -22.95187 -22.37041 -21.93901 -20.97548 -20.01262 -19.58943 -17.85490 -16.83131 -16.63043 -16.18306 -15.70864 -15.64460 -14.98030 -14.75493 -14.72949 -14.47065 -14.31305 -13.84240 -13.68438 -13.52436 -13.36839 -13.27723 -12.87616 -12.50356 -12.36247 -11.87871 -11.68972 -11.56934 -11.40974 -11.35518 -11.11159 -11.00193 -10.87404 -10.79112 -10.71639 -10.42046 -10.39352 -10.20613 -9.99348 -9.91750 -9.68224 -9.60262 -9.33380 -9.08092 -8.90446 -8.74975 -8.37573 -6.67205 -5.79696 -3.21523 1.36183 3.39875 3.42511 3.45591 3.47995 3.52147 3.97725 4.18387 4.50663 4.55294 4.84604 4.96791 5.00888 5.08173 5.19505 5.26590 5.28223 5.32016 5.39677 5.43332 5.48621 5.52255 5.57817 5.60082 5.71338 5.78324 5.84600 5.85644 5.94665 6.02554 6.09048 6.14910 6.16685 6.18816 6.21864 6.25103 6.38212 6.48553 6.52578 6.68537 6.70418 6.75789 6.85171 6.95049 7.02558 7.29302 7.50609 7.60689 7.82381 7.83515 8.43327 8.55431 9.20775 9.83129 10.38983 11.28931 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009037 B = 0.004313 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3097.499505 B = 6489.884297 C = 8463.735393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.006 3.994 3 Si 0.900 3.100 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.583 5.583 10 C 0.142 3.858 11 C 0.125 3.875 12 H 0.090 0.910 13 N -0.721 5.721 14 C 0.537 3.463 15 O -0.530 6.530 16 C -0.214 4.214 17 C -0.040 4.040 18 C -0.122 4.122 19 C -0.189 4.189 20 C -0.155 4.155 21 C -0.110 4.110 22 C -0.077 4.077 23 C -0.140 4.140 24 C 0.062 3.938 25 O -0.389 6.389 26 C 0.059 3.941 27 C -0.134 4.134 28 C 0.184 3.816 29 H 0.254 0.746 30 H 0.057 0.943 31 H 0.016 0.984 32 H 0.393 0.607 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.132 0.868 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.044 0.956 48 H 0.084 0.916 49 H 0.068 0.932 50 H 0.019 0.981 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.215 -16.922 3.081 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.192 4.192 3 Si 0.729 3.271 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.305 5.305 10 C 0.015 3.985 11 C 0.020 3.980 12 H 0.108 0.892 13 N -0.371 5.371 14 C 0.326 3.674 15 O -0.408 6.408 16 C -0.235 4.235 17 C -0.059 4.059 18 C -0.140 4.140 19 C -0.226 4.226 20 C -0.192 4.192 21 C -0.148 4.148 22 C -0.080 4.080 23 C -0.179 4.179 24 C -0.015 4.015 25 O -0.308 6.308 26 C -0.017 4.017 27 C -0.171 4.171 28 C 0.058 3.942 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.226 0.774 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.150 0.850 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.062 0.938 48 H 0.102 0.898 49 H 0.086 0.914 50 H 0.037 0.963 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.720 -16.067 3.326 17.073 hybrid contribution -0.130 0.318 -0.436 0.555 sum 4.590 -15.750 2.890 16.657 Atomic orbital electron populations 1.70026 1.05218 1.25618 1.53760 1.24987 0.95217 0.98303 1.00741 0.86409 0.78994 0.83400 0.78253 1.20892 1.21657 1.20932 1.19121 0.92837 0.84683 1.41371 0.91702 1.43931 1.36549 1.01020 1.49023 1.21188 0.97883 0.86816 0.92654 1.21764 0.97845 0.81556 0.96870 0.89228 1.46072 1.09481 1.15621 1.65929 1.18565 0.82597 0.87845 0.78410 1.90789 1.46292 1.50126 1.53607 1.22667 0.98435 0.97050 1.05376 1.23049 0.93035 0.97798 0.92043 1.21491 0.88194 0.99650 1.04676 1.23091 1.00752 1.01928 0.96861 1.22783 1.00633 1.03010 0.92807 1.21809 0.97149 0.97666 0.98135 1.21164 0.94133 0.95651 0.97010 1.22132 0.98303 1.00993 0.96428 1.22562 0.88568 0.95979 0.94351 1.87857 1.18543 1.85804 1.38559 1.22671 0.86924 0.98779 0.93355 1.22113 0.99802 0.99221 0.95975 1.20828 0.88643 0.97925 0.86824 0.93613 0.92457 0.96647 0.77370 0.85645 0.85950 0.85027 0.89140 0.88710 0.88526 0.89241 0.92797 0.92156 0.91334 0.90909 0.93672 0.89734 0.89704 0.93764 0.89759 0.91361 0.96304 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.71 11.24 55.49 0.62 -25.08 16 2 C 0.01 0.17 4.89 -17.43 -0.09 0.08 16 3 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.25 -6.82 9.58 -15.06 -0.14 -6.97 16 8 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 9 N -0.58 -14.15 2.51 -172.36 -0.43 -14.58 16 10 C 0.14 3.00 6.09 -3.70 -0.02 2.98 16 11 C 0.12 2.14 2.27 -67.80 -0.15 1.99 16 12 H 0.09 1.76 5.72 -51.93 -0.30 1.46 16 13 N -0.72 -10.03 5.08 -54.86 -0.28 -10.31 16 14 C 0.54 7.97 7.62 -12.66 -0.10 7.87 16 15 O -0.53 -9.78 13.07 5.27 0.07 -9.71 16 16 C -0.21 -2.35 10.02 -37.81 -0.38 -2.73 16 17 C -0.04 -0.41 9.74 -36.13 -0.35 -0.76 16 18 C -0.12 -1.51 4.26 -91.77 -0.39 -1.90 16 19 C -0.19 -1.87 10.24 -26.69 -0.27 -2.15 16 20 C -0.16 -1.76 10.24 -26.69 -0.27 -2.03 16 21 C -0.11 -1.69 3.63 -26.73 -0.10 -1.79 16 22 C -0.08 -1.36 0.51 -154.41 -0.08 -1.44 16 23 C -0.14 -2.16 4.92 -26.63 -0.13 -2.29 16 24 C 0.06 0.85 6.57 37.22 0.24 1.09 16 25 O -0.39 -6.19 10.76 -35.23 -0.38 -6.57 16 26 C 0.06 0.92 6.57 37.22 0.24 1.16 16 27 C -0.13 -2.41 4.48 -26.63 -0.12 -2.53 16 28 C 0.18 4.14 3.98 -3.75 -0.01 4.12 16 29 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.06 1.31 7.93 -51.93 -0.41 0.90 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.39 4.24 8.59 -40.82 -0.35 3.89 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 35 H 0.13 2.03 6.39 -51.93 -0.33 1.70 16 36 H 0.09 0.74 8.14 -51.92 -0.42 0.31 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.75 5.03 -51.93 -0.26 0.49 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.05 0.57 6.58 -51.93 -0.34 0.23 16 45 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.04 0.65 6.64 -51.93 -0.34 0.31 16 48 H 0.08 1.69 5.93 -51.93 -0.31 1.38 16 49 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 50 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.09 2.31 6.09 -51.93 -0.32 2.00 16 LS Contribution 388.11 15.07 5.85 5.85 Total: -1.00 -30.74 388.11 -10.13 -40.88 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -8.43 Total: 8.00 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -2.12 Total: -5.28 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.09 Total: -49.97 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.31 Total: -16.29 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.74 -10.13 -40.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099575281.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.808 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds