Wall clock time and date at job start Tue Mar 31 2020 19:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00160 * 2 1 4 4 H 1.48505 * 109.47029 * 239.99914 * 3 2 1 5 5 H 1.48498 * 109.47293 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46801 * 120.00158 * 3 2 1 7 7 C 1.38806 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00573 * 162.27362 * 7 2 1 9 9 N 1.36939 * 120.00346 * 342.27887 * 7 2 1 10 10 C 1.46932 * 120.64073 * 151.91318 * 9 7 2 11 11 C 1.53197 * 108.78553 * 126.37015 * 10 9 7 12 12 H 1.09000 * 109.49567 * 294.74979 * 11 10 9 13 13 N 1.46505 * 109.52526 * 174.66746 * 11 10 9 14 14 C 1.34777 * 119.99999 * 85.15636 * 13 11 10 15 15 O 1.21613 * 119.99917 * 359.97438 * 14 13 11 16 16 C 1.47105 * 119.99801 * 180.02562 * 14 13 11 17 17 C 1.32990 * 119.99790 * 172.76656 * 16 14 13 18 18 C 1.50696 * 120.00280 * 352.49272 * 17 16 14 19 19 C 1.53002 * 117.49988 * 180.49375 * 18 17 16 20 20 C 1.53000 * 117.50350 * 111.83194 * 18 17 16 21 21 C 1.53044 * 109.30428 * 54.69971 * 11 10 9 22 22 C 1.52957 * 109.55739 * 298.74550 * 21 11 10 23 23 C 1.53076 * 109.55344 * 181.29488 * 22 21 11 24 24 C 1.53113 * 109.15782 * 63.12040 * 23 22 21 25 25 O 1.42905 * 109.39694 * 57.49723 * 24 23 22 26 26 C 1.42901 * 114.13684 * 298.81784 * 25 24 23 27 27 C 1.53083 * 109.55508 * 301.06661 * 22 21 11 28 28 C 1.46953 * 120.63454 * 331.93907 * 9 7 2 29 29 H 0.97003 * 119.99453 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.58000 * 6.57999 * 10 9 7 31 31 H 1.08997 * 109.69708 * 246.22839 * 10 9 7 32 32 H 0.96997 * 119.99562 * 265.15131 * 13 11 10 33 33 H 1.07999 * 119.99697 * 352.77312 * 16 14 13 34 34 H 1.08007 * 119.99652 * 172.48856 * 17 16 14 35 35 H 1.09004 * 115.54698 * 326.15826 * 18 17 16 36 36 H 1.09008 * 117.49415 * 359.97438 * 19 18 17 37 37 H 1.09002 * 117.50150 * 145.01613 * 19 18 17 38 38 H 1.08996 * 117.50117 * 214.97935 * 20 18 17 39 39 H 1.09000 * 117.49447 * 359.97438 * 20 18 17 40 40 H 1.08998 * 109.46271 * 178.72139 * 21 11 10 41 41 H 1.08998 * 109.44271 * 58.75856 * 21 11 10 42 42 H 1.09004 * 109.52626 * 303.21940 * 23 22 21 43 43 H 1.09001 * 109.57942 * 183.05942 * 23 22 21 44 44 H 1.08992 * 109.48551 * 297.51822 * 24 23 22 45 45 H 1.09000 * 109.48461 * 177.46910 * 24 23 22 46 46 H 1.09006 * 109.47892 * 181.15249 * 26 25 24 47 47 H 1.08998 * 109.48406 * 301.19894 * 26 25 24 48 48 H 1.08998 * 109.52386 * 56.77920 * 27 22 21 49 49 H 1.09007 * 109.52094 * 176.97034 * 27 22 21 50 50 H 1.08992 * 109.58155 * 113.65244 * 28 9 7 51 51 H 1.09003 * 109.58039 * 353.24035 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0517 -1.2246 -0.2842 9 7 1.3742 -2.3598 0.3620 10 6 1.8125 -3.6546 -0.1767 11 6 2.0799 -4.6097 0.9909 12 1 2.9207 -4.2401 1.5779 13 7 2.3949 -5.9426 0.4708 14 6 3.6578 -6.2437 0.1090 15 8 4.5358 -5.4087 0.2137 16 6 3.9740 -7.5819 -0.4137 17 6 5.1837 -7.8353 -0.9045 18 6 6.1748 -6.7141 -1.0823 19 6 7.5456 -7.0683 -1.6624 20 6 7.4101 -6.7132 -0.1796 21 6 0.8339 -4.6879 1.8761 22 6 0.5218 -3.3026 2.4445 23 6 -0.7054 -3.3873 3.3555 24 6 -0.3867 -4.2980 4.5444 25 8 0.7535 -3.7893 5.2397 26 6 1.9429 -3.7340 4.4496 27 6 1.7183 -2.8006 3.2568 28 6 0.2399 -2.3308 1.2958 29 1 -0.4849 0.8401 0.0004 30 1 2.7266 -3.5192 -0.7548 31 1 1.0335 -4.0689 -0.8166 32 1 1.6946 -6.6084 0.3871 33 1 3.2236 -8.3585 -0.3989 34 1 5.4559 -8.8447 -1.1756 35 1 5.7483 -5.7481 -1.3526 36 1 7.7307 -8.1124 -1.9150 37 1 8.0211 -6.3351 -2.3140 38 1 7.7965 -5.7467 0.1438 39 1 7.5057 -7.5235 0.5433 40 1 1.0135 -5.3843 2.6951 41 1 -0.0115 -5.0357 1.2825 42 1 -1.5462 -3.7985 2.7969 43 1 -0.9608 -2.3914 3.7177 44 1 -0.1739 -5.3045 4.1846 45 1 -1.2416 -4.3263 5.2201 46 1 2.7655 -3.3562 5.0569 47 1 2.1863 -4.7332 4.0885 48 1 2.6083 -2.7929 2.6276 49 1 1.5167 -1.7916 3.6167 50 1 -0.6690 -2.6333 0.7759 51 1 0.1183 -1.3226 1.6918 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099575281.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:15 Heat of formation + Delta-G solvation = -36.164015 kcal Electronic energy + Delta-G solvation = -30769.183505 eV Core-core repulsion = 26862.420587 eV Total energy + Delta-G solvation = -3906.762918 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.62571 -40.54327 -38.60599 -37.96237 -35.86201 -35.08843 -33.51920 -32.98459 -32.01887 -30.66353 -28.69247 -27.31309 -25.38228 -24.57211 -24.49012 -23.30956 -23.14406 -22.31262 -21.50045 -20.68096 -19.25889 -18.65042 -17.80913 -17.55552 -16.90550 -16.80486 -16.53113 -16.18054 -16.04364 -15.77803 -15.54046 -15.40438 -15.12463 -15.02283 -14.80411 -14.41314 -14.16639 -14.01744 -13.74523 -13.21478 -13.09530 -13.00178 -12.77847 -12.69858 -12.60068 -12.41223 -12.37633 -12.18549 -12.13511 -11.97110 -11.89321 -11.80775 -11.60165 -11.26768 -11.13159 -10.97088 -10.60751 -10.47941 -10.27107 -10.14004 -9.81943 -8.68011 -7.92290 -5.36642 0.47596 1.40411 1.42695 1.49480 2.26596 2.40535 2.49955 3.02314 3.10587 3.21359 3.60012 3.69732 3.74905 3.85321 3.94194 4.05687 4.09337 4.16806 4.18395 4.21300 4.25712 4.34055 4.39103 4.43763 4.52150 4.56398 4.59590 4.75007 4.76676 4.78106 4.85708 4.89744 4.96751 4.99875 5.00339 5.11720 5.15925 5.24816 5.26983 5.28035 5.30304 5.37404 5.43588 5.54578 5.62089 5.63480 5.66266 5.73198 6.31848 6.34805 6.75532 7.11250 7.44280 7.81020 8.31174 9.12738 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009037 B = 0.004313 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3097.499505 B = 6489.884297 C = 8463.735393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.038 4.038 3 Si 0.956 3.044 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.281 1.281 7 C -0.262 4.262 8 H 0.050 0.950 9 N -0.599 5.599 10 C 0.146 3.854 11 C 0.144 3.856 12 H 0.064 0.936 13 N -0.710 5.710 14 C 0.527 3.473 15 O -0.576 6.576 16 C -0.221 4.221 17 C -0.028 4.028 18 C -0.147 4.147 19 C -0.165 4.165 20 C -0.164 4.164 21 C -0.098 4.098 22 C -0.071 4.071 23 C -0.137 4.137 24 C 0.063 3.937 25 O -0.400 6.400 26 C 0.070 3.930 27 C -0.128 4.128 28 C 0.195 3.805 29 H 0.251 0.749 30 H 0.026 0.974 31 H 0.016 0.984 32 H 0.414 0.586 33 H 0.167 0.833 34 H 0.166 0.834 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.111 0.889 46 H 0.094 0.906 47 H 0.060 0.940 48 H 0.057 0.943 49 H 0.040 0.960 50 H 0.001 0.999 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.075 -20.813 3.913 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.234 4.234 3 Si 0.784 3.216 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.392 4.392 8 H 0.068 0.932 9 N -0.322 5.322 10 C 0.019 3.981 11 C 0.037 3.963 12 H 0.082 0.918 13 N -0.361 5.361 14 C 0.318 3.682 15 O -0.457 6.457 16 C -0.241 4.241 17 C -0.047 4.047 18 C -0.166 4.166 19 C -0.202 4.202 20 C -0.201 4.201 21 C -0.136 4.136 22 C -0.073 4.073 23 C -0.175 4.175 24 C -0.013 4.013 25 O -0.319 6.319 26 C -0.007 4.007 27 C -0.166 4.166 28 C 0.069 3.931 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.034 0.966 32 H 0.250 0.750 33 H 0.185 0.815 34 H 0.183 0.817 35 H 0.107 0.893 36 H 0.138 0.862 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.129 0.871 46 H 0.112 0.888 47 H 0.078 0.922 48 H 0.076 0.924 49 H 0.059 0.941 50 H 0.019 0.981 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.562 -20.010 4.158 20.940 hybrid contribution -0.029 1.581 -0.790 1.767 sum 4.533 -18.429 3.368 19.275 Atomic orbital electron populations 1.70150 1.06247 1.25915 1.54825 1.25602 0.95960 1.00852 1.00985 0.85520 0.77889 0.79994 0.78169 1.20505 1.21293 1.20757 1.19246 0.92472 0.86361 1.41162 0.93245 1.44096 1.36843 1.01342 1.49906 1.21204 0.96153 0.86593 0.94144 1.21207 0.97841 0.82340 0.94893 0.91819 1.45865 1.10170 1.14517 1.65560 1.19393 0.82068 0.89147 0.77612 1.90792 1.47637 1.51960 1.55345 1.22782 0.99903 0.95451 1.05979 1.23394 0.91981 0.98728 0.90609 1.21407 0.89670 0.99074 1.06404 1.23178 0.98098 1.03507 0.95437 1.22808 1.00313 1.02746 0.94265 1.21725 0.96510 0.96583 0.98765 1.20987 0.95242 0.95598 0.95501 1.22112 0.97423 1.00942 0.97015 1.22751 0.88668 0.96080 0.93831 1.87860 1.19039 1.86096 1.38879 1.22571 0.87419 0.98593 0.92099 1.22001 0.98849 0.98816 0.96964 1.20622 0.87353 0.97303 0.87810 0.93962 0.95516 0.96576 0.74972 0.81522 0.81709 0.89310 0.86154 0.88920 0.90461 0.87691 0.89679 0.90541 0.89626 0.92811 0.91336 0.87129 0.88802 0.92168 0.92446 0.94100 0.98143 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.11 11.24 21.65 0.24 -54.87 16 2 C -0.04 -2.17 4.89 84.86 0.42 -1.75 16 3 Si 0.96 46.73 29.59 68.60 2.03 48.76 16 4 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.26 -15.14 9.58 84.03 0.80 -14.33 16 8 H 0.05 2.94 7.89 -2.91 -0.02 2.92 16 9 N -0.60 -30.70 2.51 -699.23 -1.75 -32.45 16 10 C 0.15 6.46 6.09 86.36 0.53 6.98 16 11 C 0.14 4.94 2.27 45.07 0.10 5.04 16 12 H 0.06 2.58 5.72 -2.39 -0.01 2.57 16 13 N -0.71 -18.76 5.08 -445.74 -2.26 -21.03 16 14 C 0.53 15.33 7.62 86.57 0.66 15.99 16 15 O -0.58 -22.24 13.07 -4.07 -0.05 -22.29 16 16 C -0.22 -4.22 10.02 23.43 0.23 -3.98 16 17 C -0.03 -0.50 9.74 24.52 0.24 -0.26 16 18 C -0.15 -3.57 4.26 -11.54 -0.05 -3.62 16 19 C -0.17 -2.99 10.24 30.62 0.31 -2.68 16 20 C -0.16 -3.65 10.24 30.62 0.31 -3.34 16 21 C -0.10 -2.84 3.63 30.59 0.11 -2.73 16 22 C -0.07 -2.50 0.51 -52.12 -0.03 -2.52 16 23 C -0.14 -4.00 4.92 30.66 0.15 -3.85 16 24 C 0.06 1.49 6.57 72.02 0.47 1.96 16 25 O -0.40 -11.71 10.76 -148.98 -1.60 -13.31 16 26 C 0.07 2.05 6.57 72.02 0.47 2.53 16 27 C -0.13 -4.76 4.48 30.66 0.14 -4.62 16 28 C 0.19 9.17 3.98 86.32 0.34 9.51 16 29 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.03 1.31 7.93 -2.39 -0.02 1.29 16 31 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.41 7.60 8.59 -92.71 -0.80 6.80 16 33 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.09 2.95 6.39 -2.39 -0.02 2.93 16 36 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.08 2.02 5.03 -2.39 -0.01 2.01 16 41 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.09 2.22 8.14 -2.39 -0.02 2.21 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.07 1.35 6.58 -2.39 -0.02 1.34 16 45 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 47 H 0.06 1.60 6.64 -2.39 -0.02 1.59 16 48 H 0.06 2.43 5.93 -2.39 -0.01 2.42 16 49 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 50 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 51 H 0.05 2.79 6.09 -2.39 -0.01 2.78 16 Total: -1.00 -73.72 388.11 1.95 -71.77 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.13 Total: 25.11 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 5.22 Total: -1.68 kcal Atomic # 7 Polarization: -104.58 SS G_CDS: -3.77 Total: -108.35 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -1.66 Total: -35.61 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -73.72 1.95 -71.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099575281.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.601 kcal (2) G-P(sol) polarization free energy of solvation -73.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds