Wall clock time and date at job start Tue Mar 31 2020 19:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00215 * 2 1 4 4 H 1.48508 * 109.46818 * 270.00135 * 3 2 1 5 5 H 1.48502 * 109.46995 * 29.99824 * 3 2 1 6 6 H 1.48496 * 109.47253 * 150.00156 * 3 2 1 7 7 C 1.38819 * 119.99639 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99484 * 163.09347 * 7 2 1 9 9 N 1.36935 * 119.99715 * 343.09535 * 7 2 1 10 10 C 1.46931 * 120.62955 * 151.85984 * 9 7 2 11 11 C 1.53202 * 108.78282 * 126.34768 * 10 9 7 12 12 H 1.08996 * 109.50045 * 294.74512 * 11 10 9 13 13 N 1.46504 * 109.52542 * 174.66102 * 11 10 9 14 14 C 1.34781 * 119.99522 * 85.15619 * 13 11 10 15 15 O 1.21606 * 120.00544 * 359.97438 * 14 13 11 16 16 C 1.47107 * 119.99591 * 179.97438 * 14 13 11 17 17 C 1.32989 * 119.99998 * 179.97438 * 16 14 13 18 18 C 1.50698 * 120.00178 * 180.02562 * 17 16 14 19 19 C 1.53000 * 117.50036 * 188.74879 * 18 17 16 20 20 C 1.52999 * 117.50378 * 120.08697 * 18 17 16 21 21 C 1.53054 * 109.30079 * 54.69848 * 11 10 9 22 22 C 1.52942 * 109.55411 * 298.74317 * 21 11 10 23 23 C 1.53084 * 109.55314 * 181.29773 * 22 21 11 24 24 C 1.53117 * 109.15664 * 63.12287 * 23 22 21 25 25 O 1.42904 * 109.40194 * 57.49410 * 24 23 22 26 26 C 1.42897 * 114.13867 * 298.82902 * 25 24 23 27 27 C 1.53084 * 109.56025 * 301.06822 * 22 21 11 28 28 C 1.46936 * 120.64216 * 331.86246 * 9 7 2 29 29 H 0.97000 * 120.00042 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.58537 * 6.55985 * 10 9 7 31 31 H 1.09002 * 109.69914 * 246.20274 * 10 9 7 32 32 H 0.96989 * 120.00216 * 265.15735 * 13 11 10 33 33 H 1.07998 * 120.00105 * 0.02562 * 16 14 13 34 34 H 1.08003 * 120.00264 * 0.02562 * 17 16 14 35 35 H 1.09005 * 115.54716 * 334.41323 * 18 17 16 36 36 H 1.09001 * 117.49898 * 359.97438 * 19 18 17 37 37 H 1.09003 * 117.49950 * 145.01576 * 19 18 17 38 38 H 1.08995 * 117.49958 * 214.98019 * 20 18 17 39 39 H 1.08998 * 117.49538 * 359.97438 * 20 18 17 40 40 H 1.09006 * 109.45073 * 178.71875 * 21 11 10 41 41 H 1.08999 * 109.45489 * 58.76998 * 21 11 10 42 42 H 1.08999 * 109.52231 * 303.22437 * 23 22 21 43 43 H 1.08998 * 109.57943 * 183.05856 * 23 22 21 44 44 H 1.09006 * 109.48256 * 297.52340 * 24 23 22 45 45 H 1.08995 * 109.48569 * 177.47835 * 24 23 22 46 46 H 1.09000 * 109.47992 * 181.15208 * 26 25 24 47 47 H 1.08998 * 109.48137 * 301.18856 * 26 25 24 48 48 H 1.09001 * 109.52477 * 56.78198 * 27 22 21 49 49 H 1.08997 * 109.52570 * 176.97393 * 27 22 21 50 50 H 1.08997 * 109.59073 * 113.67816 * 28 9 7 51 51 H 1.09007 * 109.58351 * 353.26300 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2725 9 7 1.3698 -2.3626 0.3438 10 6 1.8141 -3.6529 -0.2009 11 6 2.0683 -4.6178 0.9616 12 1 2.9025 -4.2534 1.5612 13 7 2.3890 -5.9464 0.4340 14 6 3.6559 -6.2445 0.0838 15 8 4.5327 -5.4107 0.2053 16 6 3.9780 -7.5788 -0.4454 17 6 5.2280 -7.8729 -0.7914 18 6 5.5579 -9.2395 -1.3342 19 6 7.0360 -9.5875 -1.5211 20 6 6.1530 -9.3161 -2.7416 21 6 0.8123 -4.7032 1.8321 22 6 0.4940 -3.3228 2.4084 23 6 -0.7434 -3.4148 3.3050 24 6 -0.4382 -4.3354 4.4897 25 8 0.6942 -3.8329 5.2020 26 6 1.8924 -3.7711 4.4258 27 6 1.6813 -2.8278 3.2384 28 6 0.2252 -2.3413 1.2649 29 1 -0.4850 0.8400 0.0004 30 1 2.7346 -3.5128 -0.7674 31 1 1.0423 -4.0618 -0.8530 32 1 1.6897 -6.6113 0.3368 33 1 3.1993 -8.3192 -0.5537 34 1 6.0067 -7.1323 -0.6836 35 1 4.8869 -10.0418 -1.0271 36 1 7.7699 -8.8278 -1.2519 37 1 7.3374 -10.6188 -1.3374 38 1 5.8738 -10.1688 -3.3603 39 1 6.3054 -8.3779 -3.2752 40 1 0.9828 -5.4066 2.6472 41 1 -0.0265 -5.0461 1.2264 42 1 -1.5778 -3.8212 2.7335 43 1 -1.0028 -2.4220 3.6725 44 1 -0.2213 -5.3391 4.1238 45 1 -1.3006 -4.3694 5.1554 46 1 2.7081 -3.3986 5.0455 47 1 2.1399 -4.7672 4.0591 48 1 2.5784 -2.8149 2.6194 49 1 1.4757 -1.8219 3.6044 50 1 -0.6780 -2.6394 0.7324 51 1 0.0992 -1.3364 1.6680 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099575284.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:31 Heat of formation + Delta-G solvation = -24.667775 kcal Electronic energy + Delta-G solvation = -30204.285154 eV Core-core repulsion = 26298.020751 eV Total energy + Delta-G solvation = -3906.264404 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.23251 -39.23069 -37.80112 -36.87636 -34.36262 -33.51307 -32.57803 -31.24722 -30.69046 -29.18728 -27.14046 -25.42647 -24.63464 -23.26089 -22.95546 -22.70038 -21.85193 -20.72709 -19.98931 -19.65928 -18.05764 -16.95282 -16.71728 -16.29276 -15.85810 -15.67313 -15.08398 -14.77082 -14.75656 -14.58381 -14.35884 -13.82913 -13.79512 -13.67602 -13.39786 -13.13267 -12.79053 -12.50582 -12.40477 -11.93904 -11.87546 -11.72486 -11.42679 -11.37184 -11.34312 -11.01612 -10.88504 -10.79304 -10.77169 -10.73104 -10.40862 -10.20958 -10.02030 -9.91646 -9.80521 -9.61923 -9.44004 -9.26246 -8.90413 -8.80166 -8.39043 -6.66660 -5.79376 -3.21536 1.30413 3.37518 3.38286 3.40172 3.46420 3.50734 3.70553 4.18654 4.35110 4.52197 4.55064 4.65815 4.85002 5.00331 5.06916 5.18308 5.20171 5.28113 5.30901 5.38935 5.43585 5.48168 5.52277 5.54306 5.59782 5.71519 5.76419 5.77802 5.78713 5.85605 5.94616 6.02547 6.16375 6.18556 6.22427 6.26610 6.31099 6.38580 6.52637 6.65781 6.70060 6.76092 6.85111 6.95098 7.01381 7.29847 7.50942 7.62017 7.79527 7.82925 8.43123 8.51180 9.21221 9.83287 10.39040 11.29253 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009920 B = 0.003527 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.784447 B = 7936.000328 C = 9897.082451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.005 3.995 3 Si 0.900 3.100 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.584 5.584 10 C 0.142 3.858 11 C 0.124 3.876 12 H 0.090 0.910 13 N -0.718 5.718 14 C 0.541 3.459 15 O -0.543 6.543 16 C -0.207 4.207 17 C -0.043 4.043 18 C -0.138 4.138 19 C -0.172 4.172 20 C -0.167 4.167 21 C -0.109 4.109 22 C -0.078 4.078 23 C -0.140 4.140 24 C 0.062 3.938 25 O -0.389 6.389 26 C 0.059 3.941 27 C -0.134 4.134 28 C 0.183 3.817 29 H 0.253 0.747 30 H 0.057 0.943 31 H 0.017 0.983 32 H 0.395 0.605 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.044 0.956 48 H 0.084 0.916 49 H 0.068 0.932 50 H 0.019 0.981 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.753 -18.994 2.228 19.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.194 4.194 3 Si 0.730 3.270 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.084 0.916 9 N -0.305 5.305 10 C 0.014 3.986 11 C 0.019 3.981 12 H 0.108 0.892 13 N -0.368 5.368 14 C 0.329 3.671 15 O -0.421 6.421 16 C -0.228 4.228 17 C -0.063 4.063 18 C -0.156 4.156 19 C -0.209 4.209 20 C -0.204 4.204 21 C -0.147 4.147 22 C -0.080 4.080 23 C -0.178 4.178 24 C -0.015 4.015 25 O -0.308 6.308 26 C -0.017 4.017 27 C -0.171 4.171 28 C 0.057 3.943 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.034 0.966 32 H 0.228 0.772 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.131 0.869 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.062 0.938 48 H 0.102 0.898 49 H 0.087 0.913 50 H 0.037 0.963 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.255 -18.142 2.493 18.800 hybrid contribution -0.126 0.390 -0.465 0.620 sum 4.129 -17.752 2.029 18.339 Atomic orbital electron populations 1.70023 1.05220 1.25503 1.53973 1.25005 0.95252 0.98319 1.00777 0.86332 0.79311 0.83655 0.77748 1.21413 1.21564 1.20362 1.19169 0.92604 0.84515 1.41638 0.91645 1.43931 1.35616 1.01144 1.49841 1.21196 0.97964 0.86855 0.92607 1.21800 0.97815 0.81573 0.96959 0.89206 1.46031 1.09152 1.16042 1.65555 1.18517 0.82736 0.87797 0.78044 1.90809 1.47002 1.50003 1.54317 1.22572 0.97992 0.96766 1.05454 1.23031 0.96931 0.94903 0.91391 1.21316 0.97448 0.96314 1.00568 1.23028 0.92661 1.02884 1.02350 1.22997 1.03429 1.03741 0.90223 1.21809 0.97005 0.97733 0.98192 1.21169 0.94109 0.95688 0.97028 1.22131 0.98253 1.00949 0.96500 1.22566 0.88754 0.95999 0.94151 1.87856 1.18439 1.86073 1.38384 1.22673 0.86734 0.98743 0.93599 1.22114 0.99889 0.99199 0.95933 1.20843 0.88499 0.97885 0.87039 0.93661 0.92414 0.96561 0.77220 0.85857 0.85433 0.86871 0.88258 0.88358 0.88263 0.88245 0.92762 0.92100 0.91327 0.90891 0.93674 0.89727 0.89680 0.93769 0.89768 0.91322 0.96291 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.82 11.20 55.49 0.62 -25.20 16 2 C 0.00 0.14 4.92 -17.43 -0.09 0.05 16 3 Si 0.90 21.92 29.59 -169.99 -5.03 16.89 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.25 -6.85 9.58 -15.06 -0.14 -7.00 16 8 H 0.07 1.83 7.88 -52.49 -0.41 1.41 16 9 N -0.58 -14.27 2.51 -172.37 -0.43 -14.70 16 10 C 0.14 3.03 6.09 -3.70 -0.02 3.01 16 11 C 0.12 2.16 2.27 -67.80 -0.15 2.01 16 12 H 0.09 1.80 5.72 -51.93 -0.30 1.50 16 13 N -0.72 -10.23 5.08 -54.86 -0.28 -10.51 16 14 C 0.54 8.35 7.73 -12.66 -0.10 8.26 16 15 O -0.54 -10.78 15.88 5.27 0.08 -10.70 16 16 C -0.21 -2.35 9.67 -37.80 -0.37 -2.72 16 17 C -0.04 -0.46 9.24 -36.13 -0.33 -0.80 16 18 C -0.14 -1.11 6.00 -91.77 -0.55 -1.67 16 19 C -0.17 -1.21 10.24 -26.69 -0.27 -1.48 16 20 C -0.17 -1.20 10.24 -26.69 -0.27 -1.48 16 21 C -0.11 -1.70 3.63 -26.73 -0.10 -1.80 16 22 C -0.08 -1.37 0.51 -154.41 -0.08 -1.45 16 23 C -0.14 -2.16 4.92 -26.63 -0.13 -2.29 16 24 C 0.06 0.85 6.57 37.22 0.24 1.09 16 25 O -0.39 -6.21 10.76 -35.23 -0.38 -6.59 16 26 C 0.06 0.92 6.57 37.22 0.24 1.16 16 27 C -0.13 -2.43 4.48 -26.63 -0.12 -2.55 16 28 C 0.18 4.15 3.98 -3.76 -0.01 4.13 16 29 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 30 H 0.06 1.35 7.93 -51.93 -0.41 0.93 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.39 4.31 8.59 -40.82 -0.35 3.96 16 33 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.13 1.57 7.49 -52.48 -0.39 1.17 16 35 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.76 5.03 -51.93 -0.26 0.50 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.05 0.57 6.59 -51.93 -0.34 0.23 16 45 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 47 H 0.04 0.66 6.64 -51.93 -0.34 0.31 16 48 H 0.08 1.70 5.93 -51.93 -0.31 1.39 16 49 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 50 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 51 H 0.09 2.36 6.07 -51.93 -0.31 2.04 16 LS Contribution 393.05 15.07 5.92 5.92 Total: -1.00 -31.63 393.05 -10.24 -41.86 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -8.49 Total: 6.53 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -2.25 Total: -3.51 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.09 Total: -50.41 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.30 Total: -17.28 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.63 -10.24 -41.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099575284.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.196 kcal (2) G-P(sol) polarization free energy of solvation -31.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds