Wall clock time and date at job start Tue Mar 31 2020 19:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00215 * 2 1 4 4 H 1.48508 * 109.46818 * 270.00135 * 3 2 1 5 5 H 1.48502 * 109.46995 * 29.99824 * 3 2 1 6 6 H 1.48496 * 109.47253 * 150.00156 * 3 2 1 7 7 C 1.38819 * 119.99639 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99484 * 163.09347 * 7 2 1 9 9 N 1.36935 * 119.99715 * 343.09535 * 7 2 1 10 10 C 1.46931 * 120.62955 * 151.85984 * 9 7 2 11 11 C 1.53202 * 108.78282 * 126.34768 * 10 9 7 12 12 H 1.08996 * 109.50045 * 294.74512 * 11 10 9 13 13 N 1.46504 * 109.52542 * 174.66102 * 11 10 9 14 14 C 1.34781 * 119.99522 * 85.15619 * 13 11 10 15 15 O 1.21606 * 120.00544 * 359.97438 * 14 13 11 16 16 C 1.47107 * 119.99591 * 179.97438 * 14 13 11 17 17 C 1.32989 * 119.99998 * 179.97438 * 16 14 13 18 18 C 1.50698 * 120.00178 * 180.02562 * 17 16 14 19 19 C 1.53000 * 117.50036 * 188.74879 * 18 17 16 20 20 C 1.52999 * 117.50378 * 120.08697 * 18 17 16 21 21 C 1.53054 * 109.30079 * 54.69848 * 11 10 9 22 22 C 1.52942 * 109.55411 * 298.74317 * 21 11 10 23 23 C 1.53084 * 109.55314 * 181.29773 * 22 21 11 24 24 C 1.53117 * 109.15664 * 63.12287 * 23 22 21 25 25 O 1.42904 * 109.40194 * 57.49410 * 24 23 22 26 26 C 1.42897 * 114.13867 * 298.82902 * 25 24 23 27 27 C 1.53084 * 109.56025 * 301.06822 * 22 21 11 28 28 C 1.46936 * 120.64216 * 331.86246 * 9 7 2 29 29 H 0.97000 * 120.00042 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.58537 * 6.55985 * 10 9 7 31 31 H 1.09002 * 109.69914 * 246.20274 * 10 9 7 32 32 H 0.96989 * 120.00216 * 265.15735 * 13 11 10 33 33 H 1.07998 * 120.00105 * 0.02562 * 16 14 13 34 34 H 1.08003 * 120.00264 * 0.02562 * 17 16 14 35 35 H 1.09005 * 115.54716 * 334.41323 * 18 17 16 36 36 H 1.09001 * 117.49898 * 359.97438 * 19 18 17 37 37 H 1.09003 * 117.49950 * 145.01576 * 19 18 17 38 38 H 1.08995 * 117.49958 * 214.98019 * 20 18 17 39 39 H 1.08998 * 117.49538 * 359.97438 * 20 18 17 40 40 H 1.09006 * 109.45073 * 178.71875 * 21 11 10 41 41 H 1.08999 * 109.45489 * 58.76998 * 21 11 10 42 42 H 1.08999 * 109.52231 * 303.22437 * 23 22 21 43 43 H 1.08998 * 109.57943 * 183.05856 * 23 22 21 44 44 H 1.09006 * 109.48256 * 297.52340 * 24 23 22 45 45 H 1.08995 * 109.48569 * 177.47835 * 24 23 22 46 46 H 1.09000 * 109.47992 * 181.15208 * 26 25 24 47 47 H 1.08998 * 109.48137 * 301.18856 * 26 25 24 48 48 H 1.09001 * 109.52477 * 56.78198 * 27 22 21 49 49 H 1.08997 * 109.52570 * 176.97393 * 27 22 21 50 50 H 1.08997 * 109.59073 * 113.67816 * 28 9 7 51 51 H 1.09007 * 109.58351 * 353.26300 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2725 9 7 1.3698 -2.3626 0.3438 10 6 1.8141 -3.6529 -0.2009 11 6 2.0683 -4.6178 0.9616 12 1 2.9025 -4.2534 1.5612 13 7 2.3890 -5.9464 0.4340 14 6 3.6559 -6.2445 0.0838 15 8 4.5327 -5.4107 0.2053 16 6 3.9780 -7.5788 -0.4454 17 6 5.2280 -7.8729 -0.7914 18 6 5.5579 -9.2395 -1.3342 19 6 7.0360 -9.5875 -1.5211 20 6 6.1530 -9.3161 -2.7416 21 6 0.8123 -4.7032 1.8321 22 6 0.4940 -3.3228 2.4084 23 6 -0.7434 -3.4148 3.3050 24 6 -0.4382 -4.3354 4.4897 25 8 0.6942 -3.8329 5.2020 26 6 1.8924 -3.7711 4.4258 27 6 1.6813 -2.8278 3.2384 28 6 0.2252 -2.3413 1.2649 29 1 -0.4850 0.8400 0.0004 30 1 2.7346 -3.5128 -0.7674 31 1 1.0423 -4.0618 -0.8530 32 1 1.6897 -6.6113 0.3368 33 1 3.1993 -8.3192 -0.5537 34 1 6.0067 -7.1323 -0.6836 35 1 4.8869 -10.0418 -1.0271 36 1 7.7699 -8.8278 -1.2519 37 1 7.3374 -10.6188 -1.3374 38 1 5.8738 -10.1688 -3.3603 39 1 6.3054 -8.3779 -3.2752 40 1 0.9828 -5.4066 2.6472 41 1 -0.0265 -5.0461 1.2264 42 1 -1.5778 -3.8212 2.7335 43 1 -1.0028 -2.4220 3.6725 44 1 -0.2213 -5.3391 4.1238 45 1 -1.3006 -4.3694 5.1554 46 1 2.7081 -3.3986 5.0455 47 1 2.1399 -4.7672 4.0591 48 1 2.5784 -2.8149 2.6194 49 1 1.4757 -1.8219 3.6044 50 1 -0.6780 -2.6394 0.7324 51 1 0.0992 -1.3364 1.6680 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099575284.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:30 Heat of formation + Delta-G solvation = -44.368326 kcal Electronic energy + Delta-G solvation = -30205.139434 eV Core-core repulsion = 26298.020751 eV Total energy + Delta-G solvation = -3907.118684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.63468 -40.48159 -38.58641 -38.23462 -35.95007 -35.11213 -33.58556 -33.01415 -32.01612 -30.70434 -28.69312 -27.32096 -25.67317 -24.57159 -24.50598 -23.27784 -23.19727 -22.02717 -21.43600 -20.57668 -19.42487 -18.68746 -18.08206 -17.63849 -16.91967 -16.87292 -16.51802 -16.23472 -16.08752 -15.82397 -15.57925 -15.40281 -15.11640 -15.11027 -14.92031 -14.60215 -14.23464 -13.88419 -13.54495 -13.22208 -13.09817 -13.01500 -12.75738 -12.70114 -12.57664 -12.38644 -12.37230 -12.18095 -12.14935 -12.07359 -11.93325 -11.85184 -11.62550 -11.37180 -11.15181 -11.03588 -10.80434 -10.61736 -10.26983 -10.22665 -9.92676 -8.68094 -7.92345 -5.37108 0.35642 1.40200 1.42065 1.52036 2.18638 2.31188 2.48648 3.02601 3.04321 3.21576 3.55022 3.62803 3.73843 3.89285 3.94197 3.96913 4.03952 4.13226 4.15616 4.18420 4.21780 4.27547 4.33802 4.38937 4.45578 4.51447 4.55908 4.74904 4.76345 4.80170 4.85589 4.89671 4.96225 4.99731 5.01558 5.11734 5.12870 5.13643 5.25737 5.26884 5.29967 5.41259 5.43736 5.46381 5.54158 5.58750 5.63632 5.73511 6.32211 6.35000 6.65880 7.11246 7.33148 7.80659 8.30707 9.12816 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009920 B = 0.003527 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.784447 B = 7936.000328 C = 9897.082451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.039 4.039 3 Si 0.958 3.042 4 H -0.284 1.284 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.262 4.262 8 H 0.050 0.950 9 N -0.599 5.599 10 C 0.144 3.856 11 C 0.141 3.859 12 H 0.064 0.936 13 N -0.704 5.704 14 C 0.535 3.465 15 O -0.598 6.598 16 C -0.211 4.211 17 C -0.035 4.035 18 C -0.144 4.144 19 C -0.170 4.170 20 C -0.165 4.165 21 C -0.098 4.098 22 C -0.072 4.072 23 C -0.136 4.136 24 C 0.063 3.937 25 O -0.399 6.399 26 C 0.069 3.931 27 C -0.129 4.129 28 C 0.194 3.806 29 H 0.251 0.749 30 H 0.026 0.974 31 H 0.019 0.981 32 H 0.416 0.584 33 H 0.163 0.837 34 H 0.103 0.897 35 H 0.136 0.864 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.111 0.889 46 H 0.094 0.906 47 H 0.060 0.940 48 H 0.056 0.944 49 H 0.041 0.959 50 H 0.002 0.998 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.149 -22.614 3.035 23.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.235 4.235 3 Si 0.786 3.214 4 H -0.210 1.210 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.393 4.393 8 H 0.068 0.932 9 N -0.322 5.322 10 C 0.017 3.983 11 C 0.034 3.966 12 H 0.082 0.918 13 N -0.354 5.354 14 C 0.325 3.675 15 O -0.480 6.480 16 C -0.232 4.232 17 C -0.055 4.055 18 C -0.161 4.161 19 C -0.207 4.207 20 C -0.202 4.202 21 C -0.136 4.136 22 C -0.074 4.074 23 C -0.174 4.174 24 C -0.014 4.014 25 O -0.319 6.319 26 C -0.007 4.007 27 C -0.167 4.167 28 C 0.068 3.932 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.254 0.746 33 H 0.181 0.819 34 H 0.121 0.879 35 H 0.154 0.846 36 H 0.109 0.891 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.129 0.871 46 H 0.112 0.888 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.060 0.940 50 H 0.020 0.980 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.624 -21.819 3.300 22.363 hybrid contribution 0.129 1.534 -0.808 1.738 sum 3.753 -20.285 2.493 20.779 Atomic orbital electron populations 1.70145 1.06240 1.25868 1.54943 1.25631 0.96019 1.00898 1.00990 0.85429 0.78162 0.80154 0.77676 1.21036 1.21231 1.20208 1.19292 0.92247 0.86212 1.41515 0.93211 1.44091 1.35933 1.01417 1.50749 1.21214 0.96278 0.86698 0.94067 1.21283 0.97973 0.82230 0.95077 0.91816 1.45798 1.09698 1.15052 1.64890 1.19275 0.82237 0.88922 0.77044 1.90790 1.48580 1.52056 1.56585 1.22552 0.99249 0.95157 1.06232 1.23171 0.96205 0.95919 0.90245 1.21373 0.98643 0.94979 1.01152 1.23131 0.91899 1.03776 1.01914 1.23080 1.03074 1.04014 0.90055 1.21730 0.96259 0.96731 0.98844 1.20996 0.95286 0.95570 0.95537 1.22109 0.97304 1.00925 0.97100 1.22759 0.88891 0.96086 0.93626 1.87860 1.18912 1.86353 1.38730 1.22573 0.87252 0.98522 0.92381 1.22005 0.98884 0.98873 0.96917 1.20642 0.87203 0.97339 0.87982 0.93941 0.95505 0.96273 0.74646 0.81912 0.87949 0.84630 0.89070 0.86399 0.86298 0.89390 0.89594 0.90330 0.89572 0.92777 0.91329 0.87117 0.88772 0.92192 0.92506 0.93986 0.98036 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.10 11.20 21.65 0.24 -54.85 16 2 C -0.04 -2.26 4.92 84.86 0.42 -1.84 16 3 Si 0.96 46.76 29.59 68.60 2.03 48.79 16 4 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 7 C -0.26 -15.20 9.58 84.04 0.81 -14.39 16 8 H 0.05 2.97 7.88 -2.91 -0.02 2.95 16 9 N -0.60 -30.78 2.51 -699.25 -1.75 -32.53 16 10 C 0.14 6.42 6.09 86.36 0.53 6.95 16 11 C 0.14 4.90 2.27 45.08 0.10 5.00 16 12 H 0.06 2.62 5.72 -2.39 -0.01 2.61 16 13 N -0.70 -19.00 5.08 -445.72 -2.26 -21.26 16 14 C 0.53 16.29 7.73 86.57 0.67 16.96 16 15 O -0.60 -24.72 15.88 -4.05 -0.06 -24.79 16 16 C -0.21 -4.39 9.67 23.43 0.23 -4.17 16 17 C -0.04 -0.72 9.24 24.52 0.23 -0.50 16 18 C -0.14 -1.94 6.00 -11.54 -0.07 -2.01 16 19 C -0.17 -2.02 10.24 30.62 0.31 -1.71 16 20 C -0.17 -2.01 10.24 30.62 0.31 -1.70 16 21 C -0.10 -2.84 3.63 30.59 0.11 -2.73 16 22 C -0.07 -2.52 0.51 -52.12 -0.03 -2.54 16 23 C -0.14 -3.96 4.92 30.66 0.15 -3.81 16 24 C 0.06 1.48 6.57 72.02 0.47 1.95 16 25 O -0.40 -11.68 10.76 -148.98 -1.60 -13.29 16 26 C 0.07 2.04 6.57 72.02 0.47 2.51 16 27 C -0.13 -4.78 4.48 30.66 0.14 -4.64 16 28 C 0.19 9.12 3.98 86.32 0.34 9.46 16 29 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 30 H 0.03 1.32 7.93 -2.39 -0.02 1.30 16 31 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.42 7.69 8.59 -92.72 -0.80 6.89 16 33 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.10 2.61 7.49 -2.91 -0.02 2.59 16 35 H 0.14 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 37 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.09 2.03 5.03 -2.38 -0.01 2.02 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.07 1.35 6.59 -2.38 -0.02 1.33 16 45 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 47 H 0.06 1.60 6.64 -2.39 -0.02 1.58 16 48 H 0.06 2.41 5.93 -2.39 -0.01 2.40 16 49 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 51 H 0.05 2.88 6.07 -2.38 -0.01 2.87 16 Total: -1.00 -74.42 393.05 1.91 -72.51 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.13 Total: 22.61 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 5.19 Total: 2.80 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -3.77 Total: -108.64 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -1.67 Total: -38.07 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -74.42 1.91 -72.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099575284.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.146 kcal (2) G-P(sol) polarization free energy of solvation -74.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds