Wall clock time and date at job start Tue Mar 31 2020 18:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 109.46822 * 2 1 4 4 C 1.36938 * 120.00212 * 84.40326 * 3 2 1 5 5 H 1.07999 * 120.00264 * 184.25147 * 4 3 2 6 6 C 1.38814 * 119.99410 * 4.25801 * 4 3 2 7 7 N 1.31613 * 120.00265 * 334.15428 * 6 4 3 8 8 Si 1.86804 * 119.99770 * 154.15843 * 6 4 3 9 9 H 1.48493 * 109.47176 * 265.00038 * 8 6 4 10 10 H 1.48507 * 109.46917 * 24.99921 * 8 6 4 11 11 H 1.48502 * 109.47038 * 144.99612 * 8 6 4 12 12 C 1.46498 * 119.99935 * 264.39973 * 3 2 1 13 13 H 1.09003 * 109.47454 * 180.02562 * 12 3 2 14 14 C 1.53006 * 109.47065 * 60.00402 * 12 3 2 15 15 C 1.53004 * 109.47233 * 300.00356 * 12 3 2 16 16 N 1.46498 * 109.47131 * 304.99601 * 15 12 3 17 17 C 1.34769 * 119.99948 * 179.97438 * 16 15 12 18 18 O 1.21286 * 120.00345 * 0.02562 * 17 16 15 19 19 C 1.50703 * 120.00144 * 180.02562 * 17 16 15 20 20 H 1.09003 * 110.26441 * 59.30047 * 19 17 16 21 21 C 1.54340 * 110.30382 * 181.37474 * 19 17 16 22 22 C 1.54490 * 102.32507 * 145.22006 * 21 19 17 23 23 C 1.51374 * 105.21384 * 333.76128 * 22 21 19 24 24 C 1.38470 * 130.36577 * 197.10529 * 23 22 21 25 25 C 1.38318 * 120.19859 * 180.02562 * 24 23 22 26 26 F 1.35102 * 120.06196 * 179.97438 * 25 24 23 27 27 C 1.38475 * 119.87782 * 0.02562 * 25 24 23 28 28 C 1.38064 * 119.90983 * 359.97438 * 27 25 24 29 29 C 1.38226 * 109.75990 * 17.12629 * 23 22 21 30 30 H 1.08998 * 109.46755 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47098 * 300.00214 * 1 2 3 32 32 H 1.09004 * 109.46577 * 60.00092 * 1 2 3 33 33 H 1.09004 * 109.47084 * 240.00250 * 2 1 3 34 34 H 1.08996 * 109.46829 * 119.99930 * 2 1 3 35 35 H 0.97008 * 120.00127 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.47216 * 299.99821 * 14 12 3 37 37 H 1.08998 * 109.46802 * 59.99880 * 14 12 3 38 38 H 1.08998 * 109.46796 * 179.97438 * 14 12 3 39 39 H 1.08999 * 109.46783 * 65.00452 * 15 12 3 40 40 H 1.09007 * 109.46495 * 184.99929 * 15 12 3 41 41 H 0.97003 * 119.99990 * 0.02562 * 16 15 12 42 42 H 1.09001 * 110.82700 * 263.50745 * 21 19 17 43 43 H 1.09003 * 110.82399 * 27.06034 * 21 19 17 44 44 H 1.09001 * 110.33942 * 214.79484 * 22 21 19 45 45 H 1.08995 * 110.30899 * 92.71653 * 22 21 19 46 46 H 1.08000 * 119.89616 * 0.02902 * 24 23 22 47 47 H 1.08001 * 120.04583 * 180.02562 * 27 25 24 48 48 H 1.08001 * 119.87066 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1375 2.0654 1.1802 5 1 2.4315 3.1046 1.1748 6 6 1.8805 1.4231 2.3837 7 7 1.0686 0.3877 2.4168 8 14 2.6869 2.0283 3.9563 9 1 3.9237 1.2470 4.2107 10 1 3.0300 3.4663 3.8148 11 1 1.7478 1.8530 5.0932 12 6 2.3792 2.0306 -1.2627 13 1 2.7185 3.0473 -1.0645 14 6 1.1575 2.0704 -2.1830 15 6 3.5020 1.2416 -1.9393 16 7 4.6275 1.1012 -1.0122 17 6 5.7364 0.4374 -1.3941 18 8 5.8028 -0.0435 -2.5056 19 6 6.8941 0.2925 -0.4402 20 1 6.5754 -0.2257 0.4643 21 6 8.0522 -0.4721 -1.1157 22 6 9.2973 0.2093 -0.5058 23 6 8.8436 1.6041 -0.1317 24 6 9.5812 2.7409 0.1534 25 6 8.9403 3.9234 0.4757 26 9 9.6627 5.0307 0.7539 27 6 7.5568 3.9701 0.5137 28 6 6.8217 2.8365 0.2294 29 6 7.4627 1.6520 -0.0940 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.8888 -0.0610 3.2579 36 1 0.8186 1.0536 -2.3813 37 1 0.3577 2.6325 -1.7009 38 1 1.4259 2.5540 -3.1223 39 1 3.1350 0.2537 -2.2177 40 1 3.8312 1.7720 -2.8329 41 1 4.5744 1.4855 -0.1231 42 1 8.0215 -1.5303 -0.8560 43 1 8.0275 -0.3365 -2.1970 44 1 10.1010 0.2573 -1.2405 45 1 9.6282 -0.3314 0.3809 46 1 10.6602 2.7039 0.1239 47 1 7.0536 4.8921 0.7647 48 1 5.7427 2.8738 0.2589 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154355748.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:06 Heat of formation + Delta-G solvation = -31.601755 kcal Electronic energy + Delta-G solvation = -29957.074112 eV Core-core repulsion = 25927.048723 eV Total energy + Delta-G solvation = -4030.025389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -48.97424 -40.68933 -38.76802 -37.08217 -35.33408 -34.05626 -32.37871 -31.45774 -30.00140 -28.86151 -28.62293 -28.07241 -25.54627 -23.81040 -23.08759 -21.88070 -21.68782 -21.14586 -19.77274 -19.07636 -17.26812 -17.11199 -16.89649 -16.43579 -16.18122 -15.64647 -15.49931 -15.33031 -14.63095 -14.39976 -14.24035 -13.83979 -13.63932 -13.24815 -13.03449 -13.02153 -12.70684 -12.52305 -12.46153 -12.03880 -11.98967 -11.77613 -11.69272 -11.54398 -11.46906 -11.32410 -10.98285 -10.89601 -10.84705 -10.76349 -10.39510 -10.36793 -9.89555 -9.65145 -9.59314 -9.36550 -9.03814 -8.52710 -8.50151 -8.32713 -7.03197 -5.83735 -3.13188 1.01082 1.11780 2.94888 3.31641 3.39660 3.40444 3.42755 3.67570 3.95888 4.36441 4.38933 4.41160 4.78242 4.80499 4.99294 5.04851 5.12106 5.20159 5.31879 5.34179 5.49526 5.54688 5.55202 5.60205 5.75798 5.84265 5.87422 5.96907 6.02481 6.05906 6.12455 6.16855 6.20181 6.25884 6.34941 6.41845 6.64485 6.69769 6.77162 6.83258 6.93751 7.02417 7.09492 7.23042 7.61924 7.82380 8.01267 8.14172 8.28862 8.61877 9.17442 9.79915 10.24904 11.16859 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010729 B = 0.004259 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.077188 B = 6572.328809 C = 7715.242828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.168 3.832 3 N -0.594 5.594 4 C -0.257 4.257 5 H 0.076 0.924 6 C 0.004 3.996 7 N -0.888 5.888 8 Si 0.885 3.115 9 H -0.288 1.288 10 H -0.281 1.281 11 H -0.294 1.294 12 C 0.160 3.840 13 H 0.067 0.933 14 C -0.159 4.159 15 C 0.106 3.894 16 N -0.703 5.703 17 C 0.518 3.482 18 O -0.553 6.553 19 C -0.072 4.072 20 H 0.116 0.884 21 C -0.102 4.102 22 C -0.082 4.082 23 C -0.063 4.063 24 C -0.145 4.145 25 C 0.098 3.902 26 F -0.141 7.141 27 C -0.150 4.150 28 C -0.069 4.069 29 C -0.097 4.097 30 H 0.014 0.986 31 H 0.089 0.911 32 H 0.012 0.988 33 H 0.003 0.997 34 H 0.088 0.912 35 H 0.251 0.749 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.041 0.959 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.410 0.590 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.132 0.868 47 H 0.139 0.861 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.281 1.736 -5.053 14.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.043 3.957 3 N -0.317 5.317 4 C -0.385 4.385 5 H 0.094 0.906 6 C -0.193 4.193 7 N -0.533 5.533 8 Si 0.715 3.285 9 H -0.216 1.216 10 H -0.206 1.206 11 H -0.221 1.221 12 C 0.051 3.949 13 H 0.085 0.915 14 C -0.218 4.218 15 C -0.020 4.020 16 N -0.354 5.354 17 C 0.304 3.696 18 O -0.433 6.433 19 C -0.093 4.093 20 H 0.133 0.867 21 C -0.140 4.140 22 C -0.119 4.119 23 C -0.063 4.063 24 C -0.164 4.164 25 C 0.079 3.921 26 F -0.120 7.120 27 C -0.168 4.168 28 C -0.087 4.087 29 C -0.097 4.097 30 H 0.033 0.967 31 H 0.107 0.893 32 H 0.031 0.969 33 H 0.021 0.979 34 H 0.106 0.894 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.248 0.752 42 H 0.101 0.899 43 H 0.111 0.889 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.150 0.850 47 H 0.157 0.843 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 13.262 1.357 -5.667 14.486 hybrid contribution 0.168 0.763 1.510 1.700 sum 13.430 2.120 -4.157 14.217 Atomic orbital electron populations 1.22437 0.99323 0.97913 1.00989 1.20965 0.92424 0.84315 0.97979 1.44307 1.75303 1.11276 1.00771 1.19295 1.40835 0.94969 0.83426 0.90618 1.24712 0.99180 0.98123 0.97289 1.70255 1.33790 1.24418 1.24853 0.86523 0.79782 0.78191 0.84051 1.21555 1.20621 1.22080 1.20541 0.91706 0.95382 0.87227 0.91506 1.22298 0.99514 1.01632 0.98391 1.21971 0.87104 1.01172 0.91764 1.46012 1.15145 1.55307 1.18926 1.20230 0.83524 0.78101 0.87792 1.90640 1.81872 1.49064 1.21677 1.20913 0.95016 0.93739 0.99591 0.86657 1.22281 0.90853 0.99051 1.01809 1.21146 0.98739 0.90828 1.01172 1.20354 0.93569 0.94979 0.97387 1.20463 1.00566 0.91084 1.04313 1.17508 0.89519 0.83032 1.02044 1.91491 1.77940 1.51206 1.91334 1.21050 0.91894 1.00231 1.03650 1.20689 1.00831 0.90715 0.96499 1.20293 0.94230 0.94287 1.00916 0.96654 0.89261 0.96866 0.97870 0.89374 0.93838 0.92744 0.92378 0.93995 0.92070 0.92585 0.75202 0.89863 0.88937 0.90126 0.89604 0.84962 0.84278 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.41 37.16 0.35 -2.95 16 2 C 0.17 3.77 4.92 -4.04 -0.02 3.75 16 3 N -0.59 -12.76 1.92 -165.65 -0.32 -13.08 16 4 C -0.26 -6.09 9.42 -15.06 -0.14 -6.23 16 5 H 0.08 1.76 7.78 -52.49 -0.41 1.35 16 6 C 0.00 0.11 5.10 -17.43 -0.09 0.02 16 7 N -0.89 -23.06 8.00 55.49 0.44 -22.62 16 8 Si 0.88 19.89 29.63 -169.99 -5.04 14.85 16 9 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.16 2.88 2.87 -67.93 -0.19 2.69 16 13 H 0.07 1.18 7.78 -51.93 -0.40 0.77 16 14 C -0.16 -2.64 8.24 37.16 0.31 -2.33 16 15 C 0.11 1.81 4.94 -4.04 -0.02 1.79 16 16 N -0.70 -11.72 4.85 -60.29 -0.29 -12.01 16 17 C 0.52 8.54 7.11 -10.99 -0.08 8.46 16 18 O -0.55 -10.60 15.50 5.55 0.09 -10.51 16 19 C -0.07 -0.96 3.25 -91.89 -0.30 -1.26 16 20 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 21 C -0.10 -1.15 6.35 -25.25 -0.16 -1.31 16 22 C -0.08 -0.78 6.77 -26.77 -0.18 -0.96 16 23 C -0.06 -0.73 6.14 -104.21 -0.64 -1.37 16 24 C -0.15 -1.65 10.02 -39.47 -0.40 -2.05 16 25 C 0.10 1.22 7.30 -39.46 -0.29 0.93 16 26 F -0.14 -1.79 17.27 2.25 0.04 -1.75 16 27 C -0.15 -1.87 10.03 -39.56 -0.40 -2.27 16 28 C -0.07 -0.92 9.49 -39.54 -0.38 -1.30 16 29 C -0.10 -1.27 5.59 -104.19 -0.58 -1.85 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 2.27 6.22 -51.93 -0.32 1.95 16 32 H 0.01 0.26 6.07 -51.93 -0.31 -0.05 16 33 H 0.00 0.07 6.54 -51.93 -0.34 -0.27 16 34 H 0.09 2.24 5.81 -51.93 -0.30 1.94 16 35 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 36 H 0.05 0.94 6.60 -51.93 -0.34 0.59 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 1.14 6.86 -51.93 -0.36 0.78 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.41 6.94 5.99 -40.82 -0.24 6.70 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.09 1.19 7.04 -51.93 -0.37 0.82 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 47 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 48 H 0.14 1.86 6.01 -52.49 -0.32 1.54 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -27.21 377.66 -9.67 -36.88 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.08 Total: 8.79 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -3.21 Total: -6.24 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -0.17 Total: -47.70 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.04 Total: 14.85 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -27.21 -9.67 -36.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154355748.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.277 kcal (2) G-P(sol) polarization free energy of solvation -27.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds