Wall clock time and date at job start Tue Mar 31 2020 18:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 109.46822 * 2 1 4 4 C 1.36938 * 120.00212 * 84.40326 * 3 2 1 5 5 H 1.07999 * 120.00264 * 184.25147 * 4 3 2 6 6 C 1.38814 * 119.99410 * 4.25801 * 4 3 2 7 7 N 1.31613 * 120.00265 * 334.15428 * 6 4 3 8 8 Si 1.86804 * 119.99770 * 154.15843 * 6 4 3 9 9 H 1.48493 * 109.47176 * 265.00038 * 8 6 4 10 10 H 1.48507 * 109.46917 * 24.99921 * 8 6 4 11 11 H 1.48502 * 109.47038 * 144.99612 * 8 6 4 12 12 C 1.46498 * 119.99935 * 264.39973 * 3 2 1 13 13 H 1.09003 * 109.47454 * 180.02562 * 12 3 2 14 14 C 1.53006 * 109.47065 * 60.00402 * 12 3 2 15 15 C 1.53004 * 109.47233 * 300.00356 * 12 3 2 16 16 N 1.46498 * 109.47131 * 304.99601 * 15 12 3 17 17 C 1.34769 * 119.99948 * 179.97438 * 16 15 12 18 18 O 1.21286 * 120.00345 * 0.02562 * 17 16 15 19 19 C 1.50703 * 120.00144 * 180.02562 * 17 16 15 20 20 H 1.09003 * 110.26441 * 59.30047 * 19 17 16 21 21 C 1.54340 * 110.30382 * 181.37474 * 19 17 16 22 22 C 1.54490 * 102.32507 * 145.22006 * 21 19 17 23 23 C 1.51374 * 105.21384 * 333.76128 * 22 21 19 24 24 C 1.38470 * 130.36577 * 197.10529 * 23 22 21 25 25 C 1.38318 * 120.19859 * 180.02562 * 24 23 22 26 26 F 1.35102 * 120.06196 * 179.97438 * 25 24 23 27 27 C 1.38475 * 119.87782 * 0.02562 * 25 24 23 28 28 C 1.38064 * 119.90983 * 359.97438 * 27 25 24 29 29 C 1.38226 * 109.75990 * 17.12629 * 23 22 21 30 30 H 1.08998 * 109.46755 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47098 * 300.00214 * 1 2 3 32 32 H 1.09004 * 109.46577 * 60.00092 * 1 2 3 33 33 H 1.09004 * 109.47084 * 240.00250 * 2 1 3 34 34 H 1.08996 * 109.46829 * 119.99930 * 2 1 3 35 35 H 0.97008 * 120.00127 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.47216 * 299.99821 * 14 12 3 37 37 H 1.08998 * 109.46802 * 59.99880 * 14 12 3 38 38 H 1.08998 * 109.46796 * 179.97438 * 14 12 3 39 39 H 1.08999 * 109.46783 * 65.00452 * 15 12 3 40 40 H 1.09007 * 109.46495 * 184.99929 * 15 12 3 41 41 H 0.97003 * 119.99990 * 0.02562 * 16 15 12 42 42 H 1.09001 * 110.82700 * 263.50745 * 21 19 17 43 43 H 1.09003 * 110.82399 * 27.06034 * 21 19 17 44 44 H 1.09001 * 110.33942 * 214.79484 * 22 21 19 45 45 H 1.08995 * 110.30899 * 92.71653 * 22 21 19 46 46 H 1.08000 * 119.89616 * 0.02902 * 24 23 22 47 47 H 1.08001 * 120.04583 * 180.02562 * 27 25 24 48 48 H 1.08001 * 119.87066 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1375 2.0654 1.1802 5 1 2.4315 3.1046 1.1748 6 6 1.8805 1.4231 2.3837 7 7 1.0686 0.3877 2.4168 8 14 2.6869 2.0283 3.9563 9 1 3.9237 1.2470 4.2107 10 1 3.0300 3.4663 3.8148 11 1 1.7478 1.8530 5.0932 12 6 2.3792 2.0306 -1.2627 13 1 2.7185 3.0473 -1.0645 14 6 1.1575 2.0704 -2.1830 15 6 3.5020 1.2416 -1.9393 16 7 4.6275 1.1012 -1.0122 17 6 5.7364 0.4374 -1.3941 18 8 5.8028 -0.0435 -2.5056 19 6 6.8941 0.2925 -0.4402 20 1 6.5754 -0.2257 0.4643 21 6 8.0522 -0.4721 -1.1157 22 6 9.2973 0.2093 -0.5058 23 6 8.8436 1.6041 -0.1317 24 6 9.5812 2.7409 0.1534 25 6 8.9403 3.9234 0.4757 26 9 9.6627 5.0307 0.7539 27 6 7.5568 3.9701 0.5137 28 6 6.8217 2.8365 0.2294 29 6 7.4627 1.6520 -0.0940 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.8888 -0.0610 3.2579 36 1 0.8186 1.0536 -2.3813 37 1 0.3577 2.6325 -1.7009 38 1 1.4259 2.5540 -3.1223 39 1 3.1350 0.2537 -2.2177 40 1 3.8312 1.7720 -2.8329 41 1 4.5744 1.4855 -0.1231 42 1 8.0215 -1.5303 -0.8560 43 1 8.0275 -0.3365 -2.1970 44 1 10.1010 0.2573 -1.2405 45 1 9.6282 -0.3314 0.3809 46 1 10.6602 2.7039 0.1239 47 1 7.0536 4.8921 0.7647 48 1 5.7427 2.8738 0.2589 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154355748.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:05 Heat of formation + Delta-G solvation = -43.334388 kcal Electronic energy + Delta-G solvation = -29957.582877 eV Core-core repulsion = 25927.048723 eV Total energy + Delta-G solvation = -4030.534154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -49.93475 -41.74607 -40.00055 -38.65808 -36.32906 -35.57226 -33.88221 -32.56303 -31.70556 -30.37502 -29.77857 -29.10527 -26.85696 -25.60970 -24.01916 -23.46432 -22.89573 -22.05281 -21.11993 -20.54128 -18.76378 -18.27811 -18.12115 -17.46763 -17.32369 -17.06006 -16.74960 -16.58925 -15.96441 -15.60051 -15.50536 -15.18602 -14.92807 -14.56652 -14.35935 -14.19019 -13.99510 -13.89563 -13.58595 -13.46250 -13.28700 -13.15865 -13.06298 -12.84891 -12.67900 -12.57099 -12.53600 -12.47804 -12.16824 -12.02309 -11.87389 -11.73347 -11.62664 -11.34654 -11.19386 -10.91399 -10.21046 -9.96417 -9.89599 -9.47692 -8.84209 -7.73429 -5.01217 0.04900 0.19735 1.50658 1.56809 1.60622 1.66129 2.30769 2.55130 2.58383 3.05072 3.32954 3.41425 3.45575 3.66208 3.76639 3.91987 4.04459 4.08335 4.14837 4.21140 4.35732 4.38884 4.60562 4.63198 4.64260 4.69569 4.75755 4.77205 4.89031 4.90527 5.00464 5.04297 5.08234 5.11877 5.15261 5.24918 5.26744 5.30342 5.31199 5.38131 5.46298 5.48410 5.64246 5.72073 5.85133 5.94731 6.25224 6.41483 6.66638 7.27634 7.29970 7.99888 8.41323 9.26229 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010729 B = 0.004259 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.077188 B = 6572.328809 C = 7715.242828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.177 3.823 3 N -0.600 5.600 4 C -0.248 4.248 5 H 0.081 0.919 6 C -0.041 4.041 7 N -0.911 5.911 8 Si 0.936 3.064 9 H -0.291 1.291 10 H -0.272 1.272 11 H -0.310 1.310 12 C 0.159 3.841 13 H 0.073 0.927 14 C -0.151 4.151 15 C 0.115 3.885 16 N -0.704 5.704 17 C 0.516 3.484 18 O -0.582 6.582 19 C -0.070 4.070 20 H 0.120 0.880 21 C -0.100 4.100 22 C -0.074 4.074 23 C -0.062 4.062 24 C -0.142 4.142 25 C 0.089 3.911 26 F -0.144 7.144 27 C -0.157 4.157 28 C -0.083 4.083 29 C -0.113 4.113 30 H 0.020 0.980 31 H 0.058 0.942 32 H 0.025 0.975 33 H 0.012 0.988 34 H 0.059 0.941 35 H 0.242 0.758 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.046 0.954 40 H 0.068 0.932 41 H 0.409 0.591 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.158 0.842 47 H 0.149 0.851 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.223 2.184 -5.686 16.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.052 3.948 3 N -0.322 5.322 4 C -0.377 4.377 5 H 0.099 0.901 6 C -0.236 4.236 7 N -0.559 5.559 8 Si 0.767 3.233 9 H -0.219 1.219 10 H -0.197 1.197 11 H -0.238 1.238 12 C 0.052 3.948 13 H 0.092 0.908 14 C -0.210 4.210 15 C -0.011 4.011 16 N -0.354 5.354 17 C 0.303 3.697 18 O -0.464 6.464 19 C -0.091 4.091 20 H 0.138 0.862 21 C -0.138 4.138 22 C -0.110 4.110 23 C -0.062 4.062 24 C -0.160 4.160 25 C 0.070 3.930 26 F -0.122 7.122 27 C -0.176 4.176 28 C -0.101 4.101 29 C -0.113 4.113 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.247 0.753 42 H 0.117 0.883 43 H 0.094 0.906 44 H 0.119 0.881 45 H 0.126 0.874 46 H 0.175 0.825 47 H 0.166 0.834 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.221 1.834 -6.318 16.582 hybrid contribution -0.440 0.667 1.637 1.822 sum 14.780 2.501 -4.681 15.704 Atomic orbital electron populations 1.22267 0.99203 0.98015 0.99975 1.20710 0.92385 0.84799 0.96876 1.44370 1.75271 1.10960 1.01604 1.19525 1.38930 0.95118 0.84106 0.90104 1.25207 1.00132 0.98898 0.99373 1.70409 1.35189 1.25738 1.24525 0.85703 0.78364 0.78096 0.81140 1.21863 1.19689 1.23796 1.20704 0.92542 0.95461 0.86103 0.90838 1.22179 0.98220 1.01362 0.99252 1.21811 0.86951 1.00198 0.92164 1.46067 1.15250 1.55375 1.18750 1.20783 0.83956 0.77105 0.87881 1.90621 1.82466 1.50198 1.23074 1.20974 0.94445 0.94585 0.99075 0.86233 1.22293 0.90868 0.99927 1.00665 1.21186 0.98185 0.89214 1.02437 1.20631 0.92897 0.96135 0.96555 1.20716 1.01878 0.90327 1.03098 1.17663 0.89544 0.83437 1.02368 1.91485 1.77918 1.51424 1.91403 1.21176 0.92267 1.00428 1.03693 1.20698 1.00587 0.91328 0.97474 1.20379 0.95180 0.93992 1.01763 0.96059 0.92282 0.95592 0.96962 0.92312 0.94832 0.93441 0.93519 0.90982 0.93588 0.91336 0.75317 0.88346 0.90620 0.88081 0.87448 0.82456 0.83353 0.85288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.06 9.41 71.98 0.68 -5.38 16 2 C 0.18 7.99 4.92 86.38 0.43 8.41 16 3 N -0.60 -25.52 1.92 -678.00 -1.30 -26.82 16 4 C -0.25 -11.66 9.42 84.03 0.79 -10.86 16 5 H 0.08 3.69 7.78 -2.91 -0.02 3.66 16 6 C -0.04 -2.05 5.10 84.86 0.43 -1.62 16 7 N -0.91 -48.33 8.00 21.65 0.17 -48.15 16 8 Si 0.94 41.30 29.63 68.60 2.03 43.33 16 9 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.31 -14.41 7.11 99.48 0.71 -13.71 16 12 C 0.16 5.54 2.87 45.00 0.13 5.67 16 13 H 0.07 2.47 7.78 -2.39 -0.02 2.45 16 14 C -0.15 -4.74 8.24 71.98 0.59 -4.14 16 15 C 0.11 3.81 4.94 86.38 0.43 4.24 16 16 N -0.70 -23.16 4.85 -463.05 -2.25 -25.41 16 17 C 0.52 16.75 7.11 87.66 0.62 17.38 16 18 O -0.58 -22.10 15.50 -3.05 -0.05 -22.15 16 19 C -0.07 -1.79 3.25 -11.62 -0.04 -1.83 16 20 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 21 C -0.10 -2.06 6.35 31.56 0.20 -1.86 16 22 C -0.07 -1.16 6.77 30.57 0.21 -0.95 16 23 C -0.06 -1.30 6.14 -19.60 -0.12 -1.42 16 24 C -0.14 -2.85 10.02 22.34 0.22 -2.63 16 25 C 0.09 2.06 7.30 22.35 0.16 2.22 16 26 F -0.14 -3.40 17.27 44.97 0.78 -2.62 16 27 C -0.16 -3.77 10.03 22.29 0.22 -3.55 16 28 C -0.08 -2.14 9.49 22.29 0.21 -1.93 16 29 C -0.11 -2.82 5.59 -19.59 -0.11 -2.93 16 30 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 3.04 6.22 -2.39 -0.01 3.02 16 32 H 0.03 1.05 6.07 -2.38 -0.01 1.04 16 33 H 0.01 0.52 6.54 -2.39 -0.02 0.51 16 34 H 0.06 3.04 5.81 -2.39 -0.01 3.02 16 35 H 0.24 12.85 8.31 -92.70 -0.77 12.08 16 36 H 0.05 1.55 6.60 -2.39 -0.02 1.54 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.05 1.68 6.86 -2.39 -0.02 1.66 16 40 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 41 H 0.41 13.75 5.99 -92.71 -0.56 13.19 16 42 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.08 1.84 7.04 -2.39 -0.02 1.83 16 44 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 47 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 48 H 0.13 3.47 6.01 -2.91 -0.02 3.46 16 Total: -1.00 -58.22 377.66 4.88 -53.34 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 0.43 Total: 29.67 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 5.06 Total: -1.19 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -3.37 Total: -100.38 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.05 Total: -22.15 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.78 Total: -2.62 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -58.22 4.88 -53.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154355748.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.010 kcal (2) G-P(sol) polarization free energy of solvation -58.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds