Wall clock time and date at job start Tue Mar 31 2020 18:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46639 * 2 1 4 4 C 1.36935 * 120.00125 * 87.58448 * 3 2 1 5 5 H 1.08007 * 120.00200 * 210.57519 * 4 3 2 6 6 C 1.38811 * 119.99948 * 30.57765 * 4 3 2 7 7 N 1.31619 * 120.00311 * 39.24352 * 6 4 3 8 8 Si 1.86800 * 119.99954 * 219.24809 * 6 4 3 9 9 H 1.48501 * 109.47441 * 179.97438 * 8 6 4 10 10 H 1.48506 * 109.47096 * 299.99807 * 8 6 4 11 11 H 1.48503 * 109.47494 * 59.99642 * 8 6 4 12 12 C 1.46502 * 120.00078 * 267.57740 * 3 2 1 13 13 H 1.09007 * 109.47169 * 180.02562 * 12 3 2 14 14 C 1.53002 * 109.46924 * 60.00671 * 12 3 2 15 15 C 1.52994 * 109.47324 * 300.00286 * 12 3 2 16 16 N 1.46497 * 109.47283 * 304.99901 * 15 12 3 17 17 C 1.34783 * 119.99856 * 180.02562 * 16 15 12 18 18 O 1.21282 * 119.99874 * 359.97438 * 17 16 15 19 19 C 1.50695 * 119.99709 * 179.97438 * 17 16 15 20 20 H 1.09001 * 115.55273 * 34.33459 * 19 17 16 21 21 C 1.52995 * 117.50080 * 248.62070 * 19 17 16 22 22 C 1.53003 * 60.00210 * 252.51364 * 21 19 17 23 23 H 1.08995 * 117.50145 * 107.48647 * 22 21 19 24 24 C 1.50705 * 117.49482 * 252.51075 * 22 21 19 25 25 C 1.38213 * 120.01544 * 8.62010 * 24 22 21 26 26 C 1.38223 * 120.02511 * 179.97438 * 25 24 22 27 27 C 1.38262 * 120.05165 * 0.02562 * 26 25 24 28 28 C 1.38178 * 120.02851 * 359.95693 * 27 26 25 29 29 C 1.38440 * 120.00496 * 188.34218 * 24 22 21 30 30 F 1.35096 * 120.03186 * 0.02562 * 29 24 22 31 31 H 1.08999 * 109.47381 * 59.99918 * 1 2 3 32 32 H 1.09007 * 109.46974 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47277 * 299.99564 * 1 2 3 34 34 H 1.08995 * 109.47494 * 240.00482 * 2 1 3 35 35 H 1.09004 * 109.47350 * 119.99579 * 2 1 3 36 36 H 0.96997 * 119.99524 * 5.86370 * 7 6 4 37 37 H 1.09000 * 109.47177 * 59.99454 * 14 12 3 38 38 H 1.08995 * 109.47142 * 179.97438 * 14 12 3 39 39 H 1.09001 * 109.46997 * 300.00328 * 14 12 3 40 40 H 1.09001 * 109.46979 * 65.00359 * 15 12 3 41 41 H 1.09009 * 109.47212 * 184.99566 * 15 12 3 42 42 H 0.96992 * 120.00271 * 359.97438 * 16 15 12 43 43 H 1.09007 * 117.49856 * 359.97438 * 21 19 17 44 44 H 1.08999 * 117.50614 * 145.02218 * 21 19 17 45 45 H 1.08002 * 119.98971 * 359.97438 * 25 24 22 46 46 H 1.08002 * 119.96985 * 179.97438 * 26 25 24 47 47 H 1.07998 * 119.98525 * 179.97438 * 27 26 25 48 48 H 1.07991 * 120.01477 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1993 2.0435 1.1848 5 1 2.0709 3.1149 1.2298 6 6 2.5478 1.3377 2.3282 7 7 3.4042 0.3412 2.2510 8 14 1.8013 1.8021 3.9763 9 1 2.3320 0.9018 5.0315 10 1 2.1538 3.2077 4.3010 11 1 0.3242 1.6656 3.9069 12 6 2.3129 2.0540 -1.2676 13 1 2.6625 3.0671 -1.0686 14 6 1.0448 2.1103 -2.1219 15 6 3.3984 1.2783 -2.0164 16 7 4.5708 1.1214 -1.1521 17 6 5.6584 0.4661 -1.6042 18 8 5.6662 0.0061 -2.7264 19 6 6.8646 0.3052 -0.7153 20 1 6.6529 0.1840 0.3470 21 6 8.1331 1.0688 -1.1007 22 6 8.0674 -0.4485 -1.2864 23 1 7.9862 -0.8278 -2.3050 24 6 8.8692 -1.3010 -0.3369 25 6 9.4816 -0.7252 0.7602 26 6 10.2166 -1.5070 1.6315 27 6 10.3404 -2.8655 1.4065 28 6 9.7287 -3.4435 0.3105 29 6 8.9876 -2.6621 -0.5602 30 9 8.3852 -3.2268 -1.6294 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.8562 0.1540 1.4134 37 1 0.2715 2.6629 -1.5883 38 1 1.2639 2.6113 -3.0648 39 1 0.6955 1.0971 -2.3208 40 1 3.0170 0.2955 -2.2935 41 1 3.6807 1.8253 -2.9161 42 1 4.5646 1.4896 -0.2549 43 1 8.0953 1.6873 -1.9976 44 1 8.7562 1.4504 -0.2920 45 1 9.3860 0.3360 0.9368 46 1 10.6952 -1.0561 2.4883 47 1 10.9153 -3.4753 2.0877 48 1 9.8253 -4.5047 0.1352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155718133.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:11 Heat of formation + Delta-G solvation = -18.325632 kcal Electronic energy + Delta-G solvation = -29259.637624 eV Core-core repulsion = 25230.187931 eV Total energy + Delta-G solvation = -4029.449693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -48.84919 -40.00593 -38.92806 -37.31758 -36.13672 -33.88447 -32.26405 -30.90646 -30.60488 -30.47597 -28.35931 -26.40540 -24.28111 -23.91407 -23.21805 -22.44840 -21.81611 -20.65320 -19.58243 -19.13977 -17.91267 -17.48436 -16.97144 -16.23920 -15.95135 -15.58280 -15.42449 -15.39232 -14.64820 -14.28734 -14.20036 -13.98639 -13.67446 -13.54961 -13.20708 -12.97197 -12.69514 -12.56980 -12.45830 -12.18658 -12.05945 -11.87253 -11.78447 -11.60309 -11.50171 -11.21681 -10.90147 -10.75485 -10.74101 -10.53310 -10.42586 -10.22356 -10.08002 -9.82778 -9.49158 -9.45828 -9.00332 -8.60566 -8.45559 -8.30036 -6.98004 -6.22946 -3.32588 1.01607 1.08811 2.87507 3.39866 3.43444 3.51127 3.66379 3.68930 4.00907 4.22339 4.49669 4.51690 4.59411 4.81253 4.83744 4.94604 5.03968 5.10520 5.19731 5.26024 5.30800 5.45359 5.53162 5.62857 5.75620 5.82672 5.92724 5.98765 6.00395 6.03848 6.06661 6.08744 6.09329 6.25333 6.26219 6.29263 6.36367 6.46121 6.50852 6.69871 6.73599 6.77909 6.82475 7.08057 7.09998 7.33062 8.03687 8.14738 8.46940 8.74753 9.01410 9.74011 10.22639 10.98452 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011434 B = 0.003483 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.279923 B = 8037.757471 C = 9306.433761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.136 3.864 3 N -0.583 5.583 4 C -0.373 4.373 5 H 0.052 0.948 6 C -0.005 4.005 7 N -0.882 5.882 8 Si 1.044 2.956 9 H -0.287 1.287 10 H -0.292 1.292 11 H -0.294 1.294 12 C 0.155 3.845 13 H 0.069 0.931 14 C -0.156 4.156 15 C 0.104 3.896 16 N -0.698 5.698 17 C 0.538 3.462 18 O -0.560 6.560 19 C -0.167 4.167 20 H 0.130 0.870 21 C -0.142 4.142 22 C -0.090 4.090 23 H 0.128 0.872 24 C -0.081 4.081 25 C -0.090 4.090 26 C -0.127 4.127 27 C -0.097 4.097 28 C -0.154 4.154 29 C 0.107 3.893 30 F -0.135 7.135 31 H 0.043 0.957 32 H 0.032 0.968 33 H 0.052 0.948 34 H 0.027 0.973 35 H 0.070 0.930 36 H 0.270 0.730 37 H 0.057 0.943 38 H 0.043 0.957 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.415 0.585 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.135 0.865 46 H 0.130 0.870 47 H 0.131 0.869 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.769 -1.682 -3.137 12.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.010 3.990 3 N -0.306 5.306 4 C -0.501 4.501 5 H 0.070 0.930 6 C -0.211 4.211 7 N -0.519 5.519 8 Si 0.874 3.126 9 H -0.213 1.213 10 H -0.219 1.219 11 H -0.221 1.221 12 C 0.047 3.953 13 H 0.088 0.912 14 C -0.216 4.216 15 C -0.022 4.022 16 N -0.349 5.349 17 C 0.324 3.676 18 O -0.440 6.440 19 C -0.188 4.188 20 H 0.148 0.852 21 C -0.179 4.179 22 C -0.109 4.109 23 H 0.146 0.854 24 C -0.082 4.082 25 C -0.108 4.108 26 C -0.145 4.145 27 C -0.115 4.115 28 C -0.173 4.173 29 C 0.088 3.912 30 F -0.113 7.113 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.252 0.748 43 H 0.123 0.877 44 H 0.126 0.874 45 H 0.153 0.847 46 H 0.148 0.852 47 H 0.149 0.851 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 11.643 -2.432 -2.342 12.122 hybrid contribution -0.327 0.424 -1.260 1.369 sum 11.315 -2.008 -3.602 12.043 Atomic orbital electron populations 1.22355 0.99858 0.98883 1.01307 1.20803 0.91564 0.86639 1.00021 1.43982 1.74191 1.11698 1.00684 1.19718 1.49526 0.93571 0.87294 0.93017 1.25627 0.95815 0.98015 1.01597 1.70847 1.19164 1.33492 1.28373 0.83845 0.76646 0.75515 0.76639 1.21324 1.21933 1.22103 1.20759 0.91347 0.95938 0.87216 0.91247 1.22249 0.99223 1.01372 0.98732 1.21948 0.86549 1.00831 0.92850 1.45843 1.13963 1.55748 1.19317 1.19488 0.83544 0.77898 0.86652 1.90638 1.82939 1.49882 1.20521 1.22391 0.88843 1.06411 1.01122 0.85222 1.23097 0.97747 0.93311 1.03766 1.20902 0.97682 0.92719 0.99556 0.85427 1.19209 0.99941 0.91916 0.97162 1.21002 0.96151 1.00667 0.93013 1.21184 0.99687 0.93929 0.99703 1.20996 0.98837 0.95144 0.96537 1.21135 0.99766 1.00514 0.95852 1.17528 0.96462 0.90896 0.86306 1.91513 1.81379 1.85089 1.53335 0.93752 0.94874 0.92857 0.95422 0.91227 0.91932 0.92376 0.93754 0.92857 0.92487 0.92842 0.74756 0.87740 0.87437 0.84750 0.85246 0.85127 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 9.99 37.16 0.37 -2.90 16 2 C 0.14 3.02 5.20 -4.04 -0.02 2.99 16 3 N -0.58 -13.00 1.72 -165.66 -0.29 -13.28 16 4 C -0.37 -9.32 8.92 -15.06 -0.13 -9.46 16 5 H 0.05 1.34 8.05 -52.48 -0.42 0.92 16 6 C 0.00 -0.12 4.52 -17.43 -0.08 -0.20 16 7 N -0.88 -23.69 12.22 55.49 0.68 -23.02 16 8 Si 1.04 23.64 30.05 -169.99 -5.11 18.53 16 9 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 12 C 0.16 2.97 2.87 -67.93 -0.20 2.78 16 13 H 0.07 1.36 7.89 -51.93 -0.41 0.95 16 14 C -0.16 -2.60 8.18 37.16 0.30 -2.30 16 15 C 0.10 1.97 4.93 -4.05 -0.02 1.95 16 16 N -0.70 -13.49 5.39 -60.30 -0.32 -13.82 16 17 C 0.54 10.31 7.61 -10.98 -0.08 10.22 16 18 O -0.56 -12.15 16.26 5.56 0.09 -12.06 16 19 C -0.17 -2.65 5.82 -91.77 -0.53 -3.19 16 20 H 0.13 2.12 8.14 -51.93 -0.42 1.70 16 21 C -0.14 -1.77 9.56 -26.73 -0.26 -2.03 16 22 C -0.09 -1.31 5.31 -91.77 -0.49 -1.80 16 23 H 0.13 2.07 7.40 -51.93 -0.38 1.68 16 24 C -0.08 -1.10 5.62 -104.55 -0.59 -1.68 16 25 C -0.09 -1.02 9.30 -39.60 -0.37 -1.39 16 26 C -0.13 -1.24 10.04 -39.58 -0.40 -1.64 16 27 C -0.10 -0.93 10.04 -39.59 -0.40 -1.33 16 28 C -0.15 -1.72 10.03 -39.51 -0.40 -2.12 16 29 C 0.11 1.49 7.25 -39.41 -0.29 1.20 16 30 F -0.13 -2.10 16.62 2.25 0.04 -2.06 16 31 H 0.04 0.81 5.71 -51.93 -0.30 0.52 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.03 0.60 6.53 -51.93 -0.34 0.26 16 35 H 0.07 1.77 5.69 -51.93 -0.30 1.47 16 36 H 0.27 7.17 7.50 -40.82 -0.31 6.86 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.89 6.36 -51.93 -0.33 0.56 16 40 H 0.06 1.15 6.87 -51.93 -0.36 0.79 16 41 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 42 H 0.41 8.50 7.33 -40.82 -0.30 8.20 16 43 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.11 1.07 6.18 -51.93 -0.32 0.75 16 45 H 0.13 1.29 6.02 -52.49 -0.32 0.97 16 46 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 47 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 48 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 391.44 15.07 5.90 5.90 Total: -1.00 -29.02 391.44 -9.68 -38.70 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -7.10 Total: 11.99 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -3.57 Total: -10.89 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 0.07 Total: -50.11 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -5.11 Total: 18.53 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.02 -9.68 -38.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155718133.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.373 kcal (2) G-P(sol) polarization free energy of solvation -29.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds