Wall clock time and date at job start Tue Mar 31 2020 18:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46639 * 2 1 4 4 C 1.36935 * 120.00125 * 87.58448 * 3 2 1 5 5 H 1.08007 * 120.00200 * 210.57519 * 4 3 2 6 6 C 1.38811 * 119.99948 * 30.57765 * 4 3 2 7 7 N 1.31619 * 120.00311 * 39.24352 * 6 4 3 8 8 Si 1.86800 * 119.99954 * 219.24809 * 6 4 3 9 9 H 1.48501 * 109.47441 * 179.97438 * 8 6 4 10 10 H 1.48506 * 109.47096 * 299.99807 * 8 6 4 11 11 H 1.48503 * 109.47494 * 59.99642 * 8 6 4 12 12 C 1.46502 * 120.00078 * 267.57740 * 3 2 1 13 13 H 1.09007 * 109.47169 * 180.02562 * 12 3 2 14 14 C 1.53002 * 109.46924 * 60.00671 * 12 3 2 15 15 C 1.52994 * 109.47324 * 300.00286 * 12 3 2 16 16 N 1.46497 * 109.47283 * 304.99901 * 15 12 3 17 17 C 1.34783 * 119.99856 * 180.02562 * 16 15 12 18 18 O 1.21282 * 119.99874 * 359.97438 * 17 16 15 19 19 C 1.50695 * 119.99709 * 179.97438 * 17 16 15 20 20 H 1.09001 * 115.55273 * 34.33459 * 19 17 16 21 21 C 1.52995 * 117.50080 * 248.62070 * 19 17 16 22 22 C 1.53003 * 60.00210 * 252.51364 * 21 19 17 23 23 H 1.08995 * 117.50145 * 107.48647 * 22 21 19 24 24 C 1.50705 * 117.49482 * 252.51075 * 22 21 19 25 25 C 1.38213 * 120.01544 * 8.62010 * 24 22 21 26 26 C 1.38223 * 120.02511 * 179.97438 * 25 24 22 27 27 C 1.38262 * 120.05165 * 0.02562 * 26 25 24 28 28 C 1.38178 * 120.02851 * 359.95693 * 27 26 25 29 29 C 1.38440 * 120.00496 * 188.34218 * 24 22 21 30 30 F 1.35096 * 120.03186 * 0.02562 * 29 24 22 31 31 H 1.08999 * 109.47381 * 59.99918 * 1 2 3 32 32 H 1.09007 * 109.46974 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47277 * 299.99564 * 1 2 3 34 34 H 1.08995 * 109.47494 * 240.00482 * 2 1 3 35 35 H 1.09004 * 109.47350 * 119.99579 * 2 1 3 36 36 H 0.96997 * 119.99524 * 5.86370 * 7 6 4 37 37 H 1.09000 * 109.47177 * 59.99454 * 14 12 3 38 38 H 1.08995 * 109.47142 * 179.97438 * 14 12 3 39 39 H 1.09001 * 109.46997 * 300.00328 * 14 12 3 40 40 H 1.09001 * 109.46979 * 65.00359 * 15 12 3 41 41 H 1.09009 * 109.47212 * 184.99566 * 15 12 3 42 42 H 0.96992 * 120.00271 * 359.97438 * 16 15 12 43 43 H 1.09007 * 117.49856 * 359.97438 * 21 19 17 44 44 H 1.08999 * 117.50614 * 145.02218 * 21 19 17 45 45 H 1.08002 * 119.98971 * 359.97438 * 25 24 22 46 46 H 1.08002 * 119.96985 * 179.97438 * 26 25 24 47 47 H 1.07998 * 119.98525 * 179.97438 * 27 26 25 48 48 H 1.07991 * 120.01477 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1993 2.0435 1.1848 5 1 2.0709 3.1149 1.2298 6 6 2.5478 1.3377 2.3282 7 7 3.4042 0.3412 2.2510 8 14 1.8013 1.8021 3.9763 9 1 2.3320 0.9018 5.0315 10 1 2.1538 3.2077 4.3010 11 1 0.3242 1.6656 3.9069 12 6 2.3129 2.0540 -1.2676 13 1 2.6625 3.0671 -1.0686 14 6 1.0448 2.1103 -2.1219 15 6 3.3984 1.2783 -2.0164 16 7 4.5708 1.1214 -1.1521 17 6 5.6584 0.4661 -1.6042 18 8 5.6662 0.0061 -2.7264 19 6 6.8646 0.3052 -0.7153 20 1 6.6529 0.1840 0.3470 21 6 8.1331 1.0688 -1.1007 22 6 8.0674 -0.4485 -1.2864 23 1 7.9862 -0.8278 -2.3050 24 6 8.8692 -1.3010 -0.3369 25 6 9.4816 -0.7252 0.7602 26 6 10.2166 -1.5070 1.6315 27 6 10.3404 -2.8655 1.4065 28 6 9.7287 -3.4435 0.3105 29 6 8.9876 -2.6621 -0.5602 30 9 8.3852 -3.2268 -1.6294 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.8562 0.1540 1.4134 37 1 0.2715 2.6629 -1.5883 38 1 1.2639 2.6113 -3.0648 39 1 0.6955 1.0971 -2.3208 40 1 3.0170 0.2955 -2.2935 41 1 3.6807 1.8253 -2.9161 42 1 4.5646 1.4896 -0.2549 43 1 8.0953 1.6873 -1.9976 44 1 8.7562 1.4504 -0.2920 45 1 9.3860 0.3360 0.9368 46 1 10.6952 -1.0561 2.4883 47 1 10.9153 -3.4753 2.0877 48 1 9.8253 -4.5047 0.1352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155718133.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:10 Heat of formation + Delta-G solvation = -32.289835 kcal Electronic energy + Delta-G solvation = -29260.243157 eV Core-core repulsion = 25230.187931 eV Total energy + Delta-G solvation = -4030.055226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -49.93633 -41.29675 -40.07151 -38.89588 -37.38086 -35.56814 -34.01356 -32.31888 -31.73649 -31.39980 -30.10856 -27.83884 -25.76256 -25.19550 -24.55221 -23.51750 -23.37662 -21.68963 -21.12607 -20.72942 -19.32344 -18.92909 -18.23205 -17.34412 -17.15830 -17.11360 -16.72031 -16.61663 -16.01899 -15.81647 -15.51718 -15.19749 -15.15928 -15.08023 -14.66729 -14.23591 -14.18666 -13.75631 -13.65372 -13.49539 -13.47107 -13.30073 -13.18212 -13.08270 -12.61638 -12.52276 -12.42285 -12.20115 -12.17077 -11.99610 -11.88742 -11.80975 -11.55537 -11.46657 -11.31428 -10.97846 -10.25823 -10.02684 -9.88068 -9.55160 -8.86429 -8.19565 -5.28731 0.11796 0.23219 1.44308 1.62193 1.68204 1.86545 2.20314 2.51740 2.67243 2.89901 3.15107 3.29339 3.41449 3.54695 3.59355 3.73733 3.81437 3.96207 4.06277 4.09030 4.18027 4.25953 4.35394 4.37630 4.41400 4.52001 4.61587 4.64653 4.71890 4.78022 4.81363 4.85279 4.90087 4.97610 5.01392 5.05481 5.09719 5.20687 5.21672 5.31873 5.36923 5.40445 5.46564 5.54115 5.58614 5.93941 6.05606 6.45700 6.57902 7.11423 7.20811 7.85030 8.33154 8.99211 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011434 B = 0.003483 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.279923 B = 8037.757471 C = 9306.433761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.141 3.859 3 N -0.590 5.590 4 C -0.370 4.370 5 H 0.042 0.958 6 C -0.043 4.043 7 N -0.906 5.906 8 Si 1.086 2.914 9 H -0.297 1.297 10 H -0.277 1.277 11 H -0.292 1.292 12 C 0.156 3.844 13 H 0.065 0.935 14 C -0.147 4.147 15 C 0.110 3.890 16 N -0.700 5.700 17 C 0.534 3.466 18 O -0.591 6.591 19 C -0.186 4.186 20 H 0.124 0.876 21 C -0.110 4.110 22 C -0.090 4.090 23 H 0.102 0.898 24 C -0.101 4.101 25 C -0.096 4.096 26 C -0.122 4.122 27 C -0.091 4.091 28 C -0.158 4.158 29 C 0.069 3.931 30 F -0.156 7.156 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.035 0.965 34 H 0.028 0.972 35 H 0.036 0.964 36 H 0.262 0.738 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.041 0.959 41 H 0.067 0.933 42 H 0.410 0.590 43 H 0.109 0.891 44 H 0.141 0.859 45 H 0.152 0.848 46 H 0.162 0.838 47 H 0.166 0.834 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.676 -0.765 -2.094 12.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.015 3.985 3 N -0.313 5.313 4 C -0.498 4.498 5 H 0.060 0.940 6 C -0.245 4.245 7 N -0.545 5.545 8 Si 0.913 3.087 9 H -0.224 1.224 10 H -0.203 1.203 11 H -0.219 1.219 12 C 0.049 3.951 13 H 0.084 0.916 14 C -0.206 4.206 15 C -0.016 4.016 16 N -0.349 5.349 17 C 0.322 3.678 18 O -0.474 6.474 19 C -0.207 4.207 20 H 0.142 0.858 21 C -0.147 4.147 22 C -0.109 4.109 23 H 0.120 0.880 24 C -0.102 4.102 25 C -0.114 4.114 26 C -0.140 4.140 27 C -0.109 4.109 28 C -0.176 4.176 29 C 0.050 3.950 30 F -0.135 7.135 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.246 0.754 43 H 0.127 0.873 44 H 0.159 0.841 45 H 0.170 0.830 46 H 0.180 0.820 47 H 0.183 0.817 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 12.539 -1.494 -1.317 12.696 hybrid contribution -0.566 0.117 -1.607 1.707 sum 11.973 -1.377 -2.924 12.401 Atomic orbital electron populations 1.22225 0.97768 1.00118 1.01221 1.20675 0.93127 0.86377 0.98371 1.44051 1.74445 1.11625 1.01132 1.19763 1.48405 0.93253 0.88417 0.93986 1.26500 0.95890 0.98113 1.03975 1.70912 1.20583 1.34856 1.28103 0.83239 0.75910 0.75780 0.73731 1.22362 1.20316 1.21864 1.20872 0.92668 0.95220 0.86372 0.91628 1.22127 0.97442 1.01665 0.99354 1.21897 0.86417 1.00035 0.93266 1.45913 1.14277 1.55725 1.18975 1.20030 0.84217 0.76936 0.86616 1.90611 1.83591 1.51132 1.22038 1.22277 0.88668 1.09805 0.99970 0.85849 1.23281 0.94767 0.91982 1.04624 1.20790 0.97079 0.94461 0.98592 0.87999 1.19272 1.00994 0.91771 0.98139 1.21276 0.95895 1.01818 0.92372 1.21631 0.98476 0.94001 0.99892 1.21456 0.97860 0.95610 0.95960 1.21431 0.99162 1.01258 0.95784 1.18006 0.98262 0.91751 0.86943 1.91449 1.82087 1.85425 1.54545 0.92033 0.93052 0.94571 0.95379 0.94591 0.92760 0.92649 0.90972 0.92932 0.94027 0.91475 0.75387 0.87299 0.84112 0.83014 0.82027 0.81679 0.83257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.99 9.99 71.98 0.72 -5.27 16 2 C 0.14 6.29 5.20 86.38 0.45 6.74 16 3 N -0.59 -26.33 1.72 -678.03 -1.17 -27.50 16 4 C -0.37 -18.50 8.92 84.03 0.75 -17.75 16 5 H 0.04 2.18 8.05 -2.91 -0.02 2.15 16 6 C -0.04 -2.20 4.52 84.86 0.38 -1.82 16 7 N -0.91 -49.55 12.22 21.65 0.26 -49.29 16 8 Si 1.09 47.82 30.05 68.60 2.06 49.88 16 9 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 10 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 11 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 12 C 0.16 5.87 2.87 44.99 0.13 6.00 16 13 H 0.07 2.53 7.89 -2.38 -0.02 2.51 16 14 C -0.15 -4.61 8.18 71.98 0.59 -4.03 16 15 C 0.11 4.15 4.93 86.38 0.43 4.58 16 16 N -0.70 -27.70 5.39 -463.06 -2.49 -30.20 16 17 C 0.53 21.17 7.61 87.65 0.67 21.83 16 18 O -0.59 -26.66 16.26 -3.04 -0.05 -26.71 16 19 C -0.19 -6.07 5.82 -11.54 -0.07 -6.14 16 20 H 0.12 4.17 8.14 -2.39 -0.02 4.15 16 21 C -0.11 -2.64 9.56 30.59 0.29 -2.35 16 22 C -0.09 -2.71 5.31 -11.54 -0.06 -2.77 16 23 H 0.10 3.55 7.40 -2.39 -0.02 3.53 16 24 C -0.10 -2.73 5.62 -19.82 -0.11 -2.85 16 25 C -0.10 -1.99 9.30 22.26 0.21 -1.78 16 26 C -0.12 -2.01 10.04 22.27 0.22 -1.79 16 27 C -0.09 -1.49 10.04 22.26 0.22 -1.27 16 28 C -0.16 -3.39 10.03 22.32 0.22 -3.17 16 29 C 0.07 1.97 7.25 22.38 0.16 2.14 16 30 F -0.16 -5.22 16.62 44.97 0.75 -4.47 16 31 H 0.06 2.15 5.71 -2.39 -0.01 2.14 16 32 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.03 1.23 6.53 -2.39 -0.02 1.22 16 35 H 0.04 1.87 5.69 -2.39 -0.01 1.86 16 36 H 0.26 14.36 7.50 -92.71 -0.70 13.66 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 39 H 0.05 1.66 6.36 -2.39 -0.02 1.64 16 40 H 0.04 1.70 6.87 -2.39 -0.02 1.68 16 41 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 42 H 0.41 17.23 7.33 -92.71 -0.68 16.55 16 43 H 0.11 2.54 8.14 -2.38 -0.02 2.52 16 44 H 0.14 2.42 6.18 -2.39 -0.01 2.40 16 45 H 0.15 2.48 6.02 -2.91 -0.02 2.46 16 46 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 47 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 48 H 0.15 2.60 8.06 -2.92 -0.02 2.58 16 Total: -1.00 -64.97 391.44 4.94 -60.03 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: 0.37 Total: 37.94 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 5.21 Total: -9.68 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -3.40 Total: -106.98 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.05 Total: -26.71 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.75 Total: -4.47 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.06 Total: 49.88 kcal Total: -64.97 4.94 -60.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155718133.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.740 kcal (2) G-P(sol) polarization free energy of solvation -64.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds