Wall clock time and date at job start Tue Mar 31 2020 18:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.46922 * 2 1 4 4 C 1.36937 * 120.00444 * 269.45636 * 3 2 1 5 5 H 1.08005 * 120.00169 * 39.11388 * 4 3 2 6 6 C 1.38814 * 119.99928 * 219.12110 * 4 3 2 7 7 N 1.31618 * 120.00229 * 8.25898 * 6 4 3 8 8 Si 1.86804 * 119.99696 * 188.25978 * 6 4 3 9 9 H 1.48503 * 109.47153 * 60.00245 * 8 6 4 10 10 H 1.48501 * 109.46945 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47233 * 299.99880 * 8 6 4 12 12 C 1.46504 * 119.99808 * 89.45059 * 3 2 1 13 13 H 1.08998 * 109.46909 * 179.02879 * 12 3 2 14 14 C 1.52999 * 109.46986 * 59.02872 * 12 3 2 15 15 C 1.52997 * 109.47228 * 299.02802 * 12 3 2 16 16 N 1.46497 * 109.47259 * 304.99923 * 15 12 3 17 17 C 1.34778 * 119.99980 * 180.02562 * 16 15 12 18 18 O 1.21276 * 119.99806 * 4.26501 * 17 16 15 19 19 C 1.50700 * 119.99974 * 184.26792 * 17 16 15 20 20 C 1.50701 * 115.55012 * 279.88602 * 19 17 16 21 21 C 1.38221 * 120.01012 * 113.32766 * 20 19 17 22 22 C 1.38222 * 120.02540 * 179.72648 * 21 20 19 23 23 C 1.38273 * 120.04865 * 0.55089 * 22 21 20 24 24 C 1.38170 * 120.02353 * 359.72059 * 23 22 21 25 25 C 1.38432 * 120.01367 * 293.60424 * 20 19 17 26 26 F 1.35099 * 120.02514 * 359.97438 * 25 20 19 27 27 C 1.53000 * 117.49769 * 134.18021 * 19 17 16 28 28 C 1.53003 * 60.00251 * 252.50821 * 27 19 17 29 29 H 1.09000 * 109.46959 * 60.00178 * 1 2 3 30 30 H 1.09008 * 109.46637 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47487 * 299.99636 * 1 2 3 32 32 H 1.09005 * 109.46919 * 240.00725 * 2 1 3 33 33 H 1.08994 * 109.47126 * 120.00230 * 2 1 3 34 34 H 0.96997 * 120.00025 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47247 * 179.97438 * 14 12 3 36 36 H 1.08999 * 109.47125 * 300.00290 * 14 12 3 37 37 H 1.09005 * 109.46925 * 59.99887 * 14 12 3 38 38 H 1.09003 * 109.47175 * 65.00245 * 15 12 3 39 39 H 1.09006 * 109.47165 * 185.00046 * 15 12 3 40 40 H 0.97002 * 119.99858 * 359.97438 * 16 15 12 41 41 H 1.07999 * 119.99153 * 359.97438 * 21 20 19 42 42 H 1.08002 * 119.97607 * 180.25583 * 22 21 20 43 43 H 1.08005 * 119.98330 * 179.75288 * 23 22 21 44 44 H 1.08005 * 120.00999 * 180.02562 * 24 23 22 45 45 H 1.08997 * 117.50321 * 359.97438 * 27 19 17 46 46 H 1.08999 * 117.49515 * 145.02285 * 27 19 17 47 47 H 1.08999 * 117.50130 * 252.51617 * 28 27 19 48 48 H 1.09001 * 117.49659 * 107.48464 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2571 2.0231 -1.1858 5 1 1.5888 1.8792 -2.0219 6 6 3.3583 2.8586 -1.3132 7 7 4.2603 2.9093 -0.3560 8 14 3.5601 3.9109 -2.8434 9 1 2.3981 4.8269 -2.9709 10 1 4.8084 4.7079 -2.7349 11 1 3.6338 3.0352 -4.0403 12 6 2.2509 2.0758 1.2687 13 1 2.6263 3.0796 1.0698 14 6 3.2804 1.3005 2.0933 15 6 0.9376 2.1676 2.0482 16 7 -0.0830 2.8045 1.2123 17 6 -1.3275 2.9928 1.6942 18 8 -1.5820 2.7062 2.8448 19 6 -2.4028 3.5593 0.8032 20 6 -2.3782 5.0557 0.6256 21 6 -2.0843 5.6004 -0.6102 22 6 -2.0672 6.9727 -0.7748 23 6 -2.3328 7.8022 0.2991 24 6 -2.6213 7.2599 1.5368 25 6 -2.6443 5.8851 1.7015 26 9 -2.9266 5.3538 2.9111 27 6 -3.7696 2.8720 0.8208 28 6 -2.8491 2.7134 -0.3911 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 5.0295 3.4934 -0.4449 35 1 3.4538 1.8175 3.0371 36 1 2.9050 0.2967 2.2922 37 1 4.2160 1.2351 1.5379 38 1 0.6081 1.1659 2.3242 39 1 1.0909 2.7609 2.9498 40 1 0.1372 3.0913 0.3121 41 1 -1.8719 4.9536 -1.4486 42 1 -1.8415 7.3975 -1.7418 43 1 -2.3152 8.8744 0.1703 44 1 -2.8291 7.9080 2.3754 45 1 -3.8909 2.0097 1.4764 46 1 -4.6513 3.5021 0.7040 47 1 -3.1252 3.2393 -1.3050 48 1 -2.3649 1.7471 -0.5323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156149143.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:57 Heat of formation + Delta-G solvation = -10.914366 kcal Electronic energy + Delta-G solvation = -30616.485885 eV Core-core repulsion = 26587.357569 eV Total energy + Delta-G solvation = -4029.128316 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.70284 -40.13292 -38.67303 -37.07525 -36.11383 -33.55619 -31.88739 -30.96430 -30.90376 -30.42477 -28.24401 -26.14598 -24.19371 -23.88655 -23.06596 -22.07453 -21.86930 -21.48117 -19.44575 -19.01016 -17.74293 -17.05855 -16.79966 -16.20157 -15.73298 -15.42987 -15.37369 -14.93029 -14.81151 -14.50010 -14.18409 -13.91128 -13.56390 -13.38364 -13.11074 -12.71019 -12.60130 -12.39830 -12.32206 -12.10512 -11.89505 -11.79226 -11.60784 -11.47641 -11.25911 -11.02129 -10.96056 -10.84086 -10.74255 -10.60594 -10.35538 -10.30630 -10.05988 -9.60326 -9.47802 -9.44986 -8.95481 -8.61038 -8.52804 -8.33074 -6.57263 -5.88683 -3.46658 1.06673 1.14552 3.03641 3.29225 3.35619 3.36852 3.45980 3.51806 3.91241 4.28277 4.39147 4.46231 4.68790 4.83807 4.90168 5.01249 5.12180 5.26890 5.29311 5.29803 5.40288 5.61434 5.66717 5.80899 5.88829 5.93912 6.01855 6.05758 6.08302 6.11757 6.21165 6.24509 6.26055 6.33773 6.38547 6.50234 6.55513 6.66242 6.70338 6.82619 6.85115 6.91452 7.12745 7.15858 7.51393 7.60465 7.74324 8.22188 8.47175 8.79544 9.17182 9.75228 10.35780 11.17281 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010661 B = 0.004908 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.852572 B = 5704.032261 C = 6861.413010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.140 3.860 3 N -0.581 5.581 4 C -0.265 4.265 5 H 0.060 0.940 6 C 0.017 3.983 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.282 1.282 10 H -0.291 1.291 11 H -0.282 1.282 12 C 0.178 3.822 13 H 0.100 0.900 14 C -0.143 4.143 15 C 0.100 3.900 16 N -0.692 5.692 17 C 0.545 3.455 18 O -0.545 6.545 19 C -0.118 4.118 20 C -0.079 4.079 21 C -0.077 4.077 22 C -0.131 4.131 23 C -0.092 4.092 24 C -0.159 4.159 25 C 0.114 3.886 26 F -0.127 7.127 27 C -0.135 4.135 28 C -0.153 4.153 29 H 0.046 0.954 30 H 0.032 0.968 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.033 0.967 34 H 0.256 0.744 35 H 0.032 0.968 36 H 0.029 0.971 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.412 0.588 41 H 0.137 0.863 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.104 0.896 46 H 0.100 0.900 47 H 0.104 0.896 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.906 5.505 -0.437 14.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.014 3.986 3 N -0.302 5.302 4 C -0.395 4.395 5 H 0.078 0.922 6 C -0.184 4.184 7 N -0.534 5.534 8 Si 0.728 3.272 9 H -0.208 1.208 10 H -0.217 1.217 11 H -0.208 1.208 12 C 0.071 3.929 13 H 0.117 0.883 14 C -0.203 4.203 15 C -0.025 4.025 16 N -0.342 5.342 17 C 0.329 3.671 18 O -0.424 6.424 19 C -0.122 4.122 20 C -0.080 4.080 21 C -0.095 4.095 22 C -0.149 4.149 23 C -0.110 4.110 24 C -0.178 4.178 25 C 0.095 3.905 26 F -0.105 7.105 27 C -0.173 4.173 28 C -0.190 4.190 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.248 0.752 41 H 0.155 0.845 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.152 0.848 45 H 0.122 0.878 46 H 0.118 0.882 47 H 0.123 0.877 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.874 5.345 0.438 13.947 hybrid contribution 0.349 0.683 -0.957 1.226 sum -12.525 6.028 -0.519 13.910 Atomic orbital electron populations 1.22548 1.00289 0.98939 1.01463 1.20772 0.91437 0.87602 0.98786 1.43778 1.76770 1.08038 1.01635 1.18990 1.05198 1.24099 0.91170 0.92232 1.25351 0.94958 1.00962 0.97092 1.69912 1.11159 1.39423 1.32920 0.86459 0.77163 0.80256 0.83308 1.20841 1.21692 1.20849 1.20484 0.88601 0.99033 0.84827 0.88266 1.22000 1.01790 0.97988 0.98474 1.22233 0.90447 0.96212 0.93650 1.45897 1.09396 1.59592 1.19309 1.19184 0.82803 0.78320 0.86823 1.90657 1.81789 1.52182 1.17732 1.19938 0.98189 0.90547 1.03492 1.18872 1.03573 0.92128 0.93444 1.21014 0.96896 0.95392 0.96235 1.21192 1.00988 0.93253 0.99458 1.21014 0.97906 1.00177 0.91888 1.21134 1.04431 0.92938 0.99326 1.17609 1.00555 0.91475 0.80883 1.91569 1.90554 1.86797 1.41560 1.22972 0.91668 1.02129 1.00500 1.23181 1.02294 1.01243 0.92266 0.93515 0.94921 0.92857 0.93754 0.94822 0.93432 0.94911 0.95186 0.90330 0.92769 0.93142 0.75184 0.84539 0.85163 0.85131 0.84808 0.87771 0.88180 0.87729 0.87395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 9.66 37.16 0.36 -2.67 16 2 C 0.14 2.80 5.88 -4.04 -0.02 2.77 16 3 N -0.58 -12.86 1.86 -165.66 -0.31 -13.17 16 4 C -0.26 -6.43 9.17 -15.06 -0.14 -6.57 16 5 H 0.06 1.44 7.84 -52.48 -0.41 1.03 16 6 C 0.02 0.43 5.04 -17.43 -0.09 0.34 16 7 N -0.89 -23.47 10.44 55.49 0.58 -22.89 16 8 Si 0.90 20.01 29.56 -169.99 -5.03 14.99 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 C 0.18 3.83 1.91 -67.93 -0.13 3.70 16 13 H 0.10 2.45 6.15 -51.93 -0.32 2.13 16 14 C -0.14 -2.96 9.02 37.16 0.34 -2.62 16 15 C 0.10 1.98 4.30 -4.05 -0.02 1.96 16 16 N -0.69 -13.01 4.08 -60.30 -0.25 -13.26 16 17 C 0.54 10.14 6.53 -10.98 -0.07 10.07 16 18 O -0.55 -11.87 16.91 5.56 0.09 -11.78 16 19 C -0.12 -1.78 1.71 -156.81 -0.27 -2.05 16 20 C -0.08 -1.13 5.11 -104.56 -0.53 -1.66 16 21 C -0.08 -0.95 9.22 -39.59 -0.37 -1.32 16 22 C -0.13 -1.40 10.04 -39.57 -0.40 -1.80 16 23 C -0.09 -0.95 10.04 -39.59 -0.40 -1.34 16 24 C -0.16 -1.91 10.03 -39.52 -0.40 -2.31 16 25 C 0.11 1.69 7.19 -39.42 -0.28 1.41 16 26 F -0.13 -2.16 16.54 2.25 0.04 -2.13 16 27 C -0.14 -1.76 9.86 -26.73 -0.26 -2.02 16 28 C -0.15 -1.88 9.42 -26.73 -0.25 -2.14 16 29 H 0.05 0.82 8.06 -51.93 -0.42 0.40 16 30 H 0.03 0.51 8.14 -51.92 -0.42 0.08 16 31 H 0.05 0.98 4.57 -51.93 -0.24 0.74 16 32 H 0.04 0.91 8.04 -51.93 -0.42 0.49 16 33 H 0.03 0.66 6.38 -51.93 -0.33 0.33 16 34 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.03 0.57 6.63 -51.93 -0.34 0.23 16 37 H 0.08 1.83 7.35 -51.93 -0.38 1.45 16 38 H 0.05 1.09 6.54 -51.93 -0.34 0.75 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.41 7.92 7.84 -40.82 -0.32 7.60 16 41 H 0.14 1.51 7.09 -52.49 -0.37 1.14 16 42 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 43 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 45 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 46 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 47 H 0.10 1.07 7.20 -51.93 -0.37 0.69 16 48 H 0.11 1.40 8.06 -51.93 -0.42 0.98 16 LS Contribution 389.79 15.07 5.87 5.87 Total: -1.00 -28.43 389.79 -9.13 -37.56 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -7.20 Total: 11.05 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -2.93 Total: -6.25 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.03 Total: -49.32 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.03 Total: 14.99 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -28.43 -9.13 -37.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156149143.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.646 kcal (2) G-P(sol) polarization free energy of solvation -28.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds