Wall clock time and date at job start Tue Mar 31 2020 18:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.46922 * 2 1 4 4 C 1.36937 * 120.00444 * 269.45636 * 3 2 1 5 5 H 1.08005 * 120.00169 * 39.11388 * 4 3 2 6 6 C 1.38814 * 119.99928 * 219.12110 * 4 3 2 7 7 N 1.31618 * 120.00229 * 8.25898 * 6 4 3 8 8 Si 1.86804 * 119.99696 * 188.25978 * 6 4 3 9 9 H 1.48503 * 109.47153 * 60.00245 * 8 6 4 10 10 H 1.48501 * 109.46945 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47233 * 299.99880 * 8 6 4 12 12 C 1.46504 * 119.99808 * 89.45059 * 3 2 1 13 13 H 1.08998 * 109.46909 * 179.02879 * 12 3 2 14 14 C 1.52999 * 109.46986 * 59.02872 * 12 3 2 15 15 C 1.52997 * 109.47228 * 299.02802 * 12 3 2 16 16 N 1.46497 * 109.47259 * 304.99923 * 15 12 3 17 17 C 1.34778 * 119.99980 * 180.02562 * 16 15 12 18 18 O 1.21276 * 119.99806 * 4.26501 * 17 16 15 19 19 C 1.50700 * 119.99974 * 184.26792 * 17 16 15 20 20 C 1.50701 * 115.55012 * 279.88602 * 19 17 16 21 21 C 1.38221 * 120.01012 * 113.32766 * 20 19 17 22 22 C 1.38222 * 120.02540 * 179.72648 * 21 20 19 23 23 C 1.38273 * 120.04865 * 0.55089 * 22 21 20 24 24 C 1.38170 * 120.02353 * 359.72059 * 23 22 21 25 25 C 1.38432 * 120.01367 * 293.60424 * 20 19 17 26 26 F 1.35099 * 120.02514 * 359.97438 * 25 20 19 27 27 C 1.53000 * 117.49769 * 134.18021 * 19 17 16 28 28 C 1.53003 * 60.00251 * 252.50821 * 27 19 17 29 29 H 1.09000 * 109.46959 * 60.00178 * 1 2 3 30 30 H 1.09008 * 109.46637 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47487 * 299.99636 * 1 2 3 32 32 H 1.09005 * 109.46919 * 240.00725 * 2 1 3 33 33 H 1.08994 * 109.47126 * 120.00230 * 2 1 3 34 34 H 0.96997 * 120.00025 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47247 * 179.97438 * 14 12 3 36 36 H 1.08999 * 109.47125 * 300.00290 * 14 12 3 37 37 H 1.09005 * 109.46925 * 59.99887 * 14 12 3 38 38 H 1.09003 * 109.47175 * 65.00245 * 15 12 3 39 39 H 1.09006 * 109.47165 * 185.00046 * 15 12 3 40 40 H 0.97002 * 119.99858 * 359.97438 * 16 15 12 41 41 H 1.07999 * 119.99153 * 359.97438 * 21 20 19 42 42 H 1.08002 * 119.97607 * 180.25583 * 22 21 20 43 43 H 1.08005 * 119.98330 * 179.75288 * 23 22 21 44 44 H 1.08005 * 120.00999 * 180.02562 * 24 23 22 45 45 H 1.08997 * 117.50321 * 359.97438 * 27 19 17 46 46 H 1.08999 * 117.49515 * 145.02285 * 27 19 17 47 47 H 1.08999 * 117.50130 * 252.51617 * 28 27 19 48 48 H 1.09001 * 117.49659 * 107.48464 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2571 2.0231 -1.1858 5 1 1.5888 1.8792 -2.0219 6 6 3.3583 2.8586 -1.3132 7 7 4.2603 2.9093 -0.3560 8 14 3.5601 3.9109 -2.8434 9 1 2.3981 4.8269 -2.9709 10 1 4.8084 4.7079 -2.7349 11 1 3.6338 3.0352 -4.0403 12 6 2.2509 2.0758 1.2687 13 1 2.6263 3.0796 1.0698 14 6 3.2804 1.3005 2.0933 15 6 0.9376 2.1676 2.0482 16 7 -0.0830 2.8045 1.2123 17 6 -1.3275 2.9928 1.6942 18 8 -1.5820 2.7062 2.8448 19 6 -2.4028 3.5593 0.8032 20 6 -2.3782 5.0557 0.6256 21 6 -2.0843 5.6004 -0.6102 22 6 -2.0672 6.9727 -0.7748 23 6 -2.3328 7.8022 0.2991 24 6 -2.6213 7.2599 1.5368 25 6 -2.6443 5.8851 1.7015 26 9 -2.9266 5.3538 2.9111 27 6 -3.7696 2.8720 0.8208 28 6 -2.8491 2.7134 -0.3911 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 5.0295 3.4934 -0.4449 35 1 3.4538 1.8175 3.0371 36 1 2.9050 0.2967 2.2922 37 1 4.2160 1.2351 1.5379 38 1 0.6081 1.1659 2.3242 39 1 1.0909 2.7609 2.9498 40 1 0.1372 3.0913 0.3121 41 1 -1.8719 4.9536 -1.4486 42 1 -1.8415 7.3975 -1.7418 43 1 -2.3152 8.8744 0.1703 44 1 -2.8291 7.9080 2.3754 45 1 -3.8909 2.0097 1.4764 46 1 -4.6513 3.5021 0.7040 47 1 -3.1252 3.2393 -1.3050 48 1 -2.3649 1.7471 -0.5323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156149143.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:56 Heat of formation + Delta-G solvation = -24.075249 kcal Electronic energy + Delta-G solvation = -30617.056584 eV Core-core repulsion = 26587.357569 eV Total energy + Delta-G solvation = -4029.699015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.84851 -41.37757 -39.83718 -38.64552 -37.34067 -35.19881 -33.68688 -32.60704 -31.81577 -31.33974 -29.97362 -27.66149 -25.75458 -25.28972 -24.06026 -23.44869 -22.90475 -22.84065 -21.05038 -20.46508 -18.93868 -18.66613 -18.02484 -17.25522 -17.03835 -16.81787 -16.70128 -16.41676 -16.27494 -15.80368 -15.49928 -15.12624 -15.02877 -14.79751 -14.20576 -14.14593 -14.02289 -13.90767 -13.69058 -13.47980 -13.31889 -13.18124 -12.83108 -12.74552 -12.71523 -12.60719 -12.48006 -12.32975 -12.20876 -12.05393 -11.88075 -11.63705 -11.42829 -11.28479 -11.18427 -10.84128 -10.41318 -9.94270 -9.88960 -9.60040 -8.40179 -7.77992 -5.38033 0.13447 0.23670 1.53587 1.55259 1.60344 1.62029 2.24048 2.52318 2.56548 2.78235 3.32959 3.38317 3.42805 3.64849 3.74815 3.81602 3.88203 4.05177 4.15020 4.24885 4.37947 4.42958 4.47968 4.55851 4.62717 4.64815 4.69122 4.79731 4.86482 4.90320 4.94206 4.96336 4.99034 5.08479 5.10716 5.13303 5.19844 5.24005 5.35310 5.37390 5.46274 5.52420 5.61934 5.72771 5.77766 5.87626 5.93545 6.56632 6.71025 7.27660 7.31713 7.93760 8.49983 9.25180 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010661 B = 0.004908 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.852572 B = 5704.032261 C = 6861.413010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.139 3.861 3 N -0.588 5.588 4 C -0.262 4.262 5 H 0.063 0.937 6 C -0.030 4.030 7 N -0.918 5.918 8 Si 0.954 3.046 9 H -0.269 1.269 10 H -0.304 1.304 11 H -0.282 1.282 12 C 0.186 3.814 13 H 0.068 0.932 14 C -0.134 4.134 15 C 0.113 3.887 16 N -0.689 5.689 17 C 0.544 3.456 18 O -0.584 6.584 19 C -0.136 4.136 20 C -0.093 4.093 21 C -0.085 4.085 22 C -0.126 4.126 23 C -0.085 4.085 24 C -0.162 4.162 25 C 0.077 3.923 26 F -0.151 7.151 27 C -0.132 4.132 28 C -0.131 4.131 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.248 0.752 35 H 0.045 0.955 36 H 0.042 0.958 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.042 0.958 40 H 0.411 0.589 41 H 0.149 0.851 42 H 0.160 0.840 43 H 0.166 0.834 44 H 0.149 0.851 45 H 0.092 0.908 46 H 0.117 0.883 47 H 0.132 0.868 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.341 6.549 -2.419 15.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.013 3.987 3 N -0.310 5.310 4 C -0.392 4.392 5 H 0.081 0.919 6 C -0.227 4.227 7 N -0.562 5.562 8 Si 0.783 3.217 9 H -0.195 1.195 10 H -0.231 1.231 11 H -0.208 1.208 12 C 0.079 3.921 13 H 0.086 0.914 14 C -0.193 4.193 15 C -0.013 4.013 16 N -0.338 5.338 17 C 0.331 3.669 18 O -0.464 6.464 19 C -0.140 4.140 20 C -0.094 4.094 21 C -0.103 4.103 22 C -0.144 4.144 23 C -0.103 4.103 24 C -0.181 4.181 25 C 0.058 3.942 26 F -0.129 7.129 27 C -0.170 4.170 28 C -0.168 4.168 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.247 0.753 41 H 0.167 0.833 42 H 0.177 0.823 43 H 0.183 0.817 44 H 0.166 0.834 45 H 0.111 0.889 46 H 0.135 0.865 47 H 0.150 0.850 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.337 6.377 -1.561 15.768 hybrid contribution 0.798 0.357 -0.335 0.936 sum -13.539 6.734 -1.896 15.239 Atomic orbital electron populations 1.22343 0.98096 1.00249 1.00974 1.20853 0.92986 0.86277 0.98574 1.43878 1.76967 1.08941 1.01263 1.19203 1.04714 1.23585 0.91720 0.91949 1.25951 0.95012 1.02448 0.99301 1.70071 1.11506 1.40163 1.34420 0.85566 0.76741 0.78894 0.80487 1.19463 1.23054 1.20802 1.20273 0.89347 0.97453 0.85023 0.91379 1.21866 1.00192 0.98798 0.98488 1.21957 0.90006 0.96121 0.93200 1.45849 1.09491 1.59496 1.18945 1.19789 0.83118 0.77264 0.86774 1.90627 1.82410 1.53791 1.19600 1.19851 0.97811 0.91576 1.04719 1.18925 1.04804 0.91431 0.94254 1.21247 0.96784 0.96546 0.95738 1.21608 0.99329 0.92624 1.00836 1.21447 0.96065 1.01970 0.90812 1.21421 1.03854 0.91964 1.00814 1.18069 1.02858 0.92910 0.80411 1.91500 1.91123 1.87300 1.43003 1.23034 0.91604 1.01660 1.00661 1.23271 1.00558 1.00435 0.92503 0.93403 0.92709 0.93827 0.94404 0.94578 0.94317 0.93604 0.93942 0.93112 0.92845 0.93932 0.75297 0.83317 0.82278 0.81689 0.83356 0.88927 0.86469 0.84992 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.25 9.66 71.98 0.70 -4.56 16 2 C 0.14 5.40 5.88 86.38 0.51 5.91 16 3 N -0.59 -25.95 1.86 -678.04 -1.26 -27.21 16 4 C -0.26 -12.58 9.17 84.03 0.77 -11.81 16 5 H 0.06 2.94 7.84 -2.91 -0.02 2.91 16 6 C -0.03 -1.48 5.04 84.86 0.43 -1.05 16 7 N -0.92 -49.11 10.44 21.65 0.23 -48.88 16 8 Si 0.95 40.73 29.56 68.60 2.03 42.76 16 9 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 10 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 11 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 12 C 0.19 8.13 1.91 44.99 0.09 8.22 16 13 H 0.07 3.44 6.15 -2.39 -0.01 3.43 16 14 C -0.13 -5.60 9.02 71.98 0.65 -4.95 16 15 C 0.11 4.53 4.30 86.38 0.37 4.90 16 16 N -0.69 -26.00 4.08 -463.06 -1.89 -27.89 16 17 C 0.54 20.44 6.53 87.66 0.57 21.02 16 18 O -0.58 -26.07 16.91 -3.02 -0.05 -26.12 16 19 C -0.14 -4.02 1.71 -53.67 -0.09 -4.11 16 20 C -0.09 -2.57 5.11 -19.82 -0.10 -2.67 16 21 C -0.09 -1.89 9.22 22.26 0.21 -1.68 16 22 C -0.13 -2.25 10.04 22.27 0.22 -2.03 16 23 C -0.09 -1.47 10.04 22.26 0.22 -1.25 16 24 C -0.16 -3.62 10.03 22.31 0.22 -3.40 16 25 C 0.08 2.25 7.19 22.37 0.16 2.41 16 26 F -0.15 -5.32 16.54 44.97 0.74 -4.58 16 27 C -0.13 -3.31 9.86 30.60 0.30 -3.01 16 28 C -0.13 -2.97 9.42 30.60 0.29 -2.68 16 29 H 0.05 1.57 8.06 -2.39 -0.02 1.56 16 30 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.04 1.54 4.57 -2.39 -0.01 1.53 16 32 H 0.04 1.51 8.04 -2.38 -0.02 1.49 16 33 H 0.04 1.38 6.38 -2.39 -0.02 1.36 16 34 H 0.25 13.19 8.31 -92.71 -0.77 12.42 16 35 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.04 1.62 6.63 -2.39 -0.02 1.61 16 37 H 0.05 2.40 7.35 -2.38 -0.02 2.38 16 38 H 0.05 2.15 6.54 -2.39 -0.02 2.14 16 39 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.41 15.71 7.84 -92.71 -0.73 14.98 16 41 H 0.15 2.82 7.09 -2.91 -0.02 2.80 16 42 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 43 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 44 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 45 H 0.09 2.51 8.14 -2.39 -0.02 2.50 16 46 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 47 H 0.13 2.25 7.20 -2.39 -0.02 2.24 16 48 H 0.10 2.45 8.06 -2.39 -0.02 2.43 16 Total: -1.00 -62.79 389.79 5.56 -57.24 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: 0.25 Total: 35.42 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 5.52 Total: -0.74 kcal Atomic # 7 Polarization: -101.06 SS G_CDS: -2.92 Total: -103.98 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.05 Total: -26.12 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.74 Total: -4.58 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -62.79 5.56 -57.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156149143.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.160 kcal (2) G-P(sol) polarization free energy of solvation -62.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds