Wall clock time and date at job start Tue Mar 31 2020 18:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36931 * 119.99812 * 2 1 4 4 H 1.08005 * 120.00865 * 37.87250 * 3 2 1 5 5 C 1.38812 * 119.99970 * 217.87140 * 3 2 1 6 6 N 1.31630 * 119.99798 * 25.75935 * 5 3 2 7 7 Si 1.86793 * 120.00327 * 205.75803 * 5 3 2 8 8 H 1.48505 * 109.47418 * 175.00021 * 7 5 3 9 9 H 1.48492 * 109.47513 * 295.00166 * 7 5 3 10 10 H 1.48502 * 109.47266 * 55.00625 * 7 5 3 11 11 C 1.46497 * 120.00002 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47134 * 266.33960 * 11 2 1 13 13 H 1.08998 * 109.58516 * 298.72614 * 12 11 2 14 14 C 1.53187 * 109.58958 * 59.01255 * 12 11 2 15 15 C 1.53072 * 109.29976 * 174.27943 * 14 12 11 16 16 C 1.53043 * 109.65907 * 298.84754 * 15 14 12 17 17 C 1.53192 * 109.30982 * 61.29772 * 16 15 14 18 18 N 1.46926 * 109.58485 * 178.44520 * 12 11 2 19 19 C 1.34774 * 120.63218 * 6.58251 * 18 12 11 20 20 O 1.21283 * 120.00029 * 4.63989 * 19 18 12 21 21 C 1.50706 * 120.00062 * 184.64653 * 19 18 12 22 22 C 1.50697 * 109.47032 * 183.97690 * 21 19 18 23 23 C 1.38264 * 119.98810 * 93.89170 * 22 21 19 24 24 C 1.38227 * 120.04808 * 180.02562 * 23 22 21 25 25 C 1.38215 * 120.02872 * 359.95326 * 24 23 22 26 26 C 1.38438 * 119.97476 * 0.02562 * 25 24 23 27 27 F 1.35093 * 120.02723 * 179.97438 * 26 25 24 28 28 C 1.38176 * 119.98620 * 273.61556 * 22 21 19 29 29 H 1.09004 * 109.46813 * 91.46116 * 1 2 3 30 30 H 1.08994 * 109.47279 * 211.46062 * 1 2 3 31 31 H 1.09006 * 109.47352 * 331.46733 * 1 2 3 32 32 H 0.96998 * 119.99488 * 5.55190 * 6 5 3 33 33 H 1.09001 * 109.46806 * 26.33798 * 11 2 1 34 34 H 1.08995 * 109.47011 * 146.33704 * 11 2 1 35 35 H 1.09000 * 109.49626 * 294.37523 * 14 12 11 36 36 H 1.08997 * 109.49990 * 54.46731 * 14 12 11 37 37 H 1.09002 * 109.45556 * 178.75306 * 15 14 12 38 38 H 1.09002 * 109.33577 * 58.86160 * 15 14 12 39 39 H 1.08999 * 109.49685 * 301.34931 * 16 15 14 40 40 H 1.08995 * 109.52526 * 181.26146 * 16 15 14 41 41 H 1.09007 * 109.58807 * 185.58338 * 17 16 15 42 42 H 1.08999 * 109.59155 * 65.15404 * 17 16 15 43 43 H 1.09003 * 109.46613 * 303.97628 * 21 19 18 44 44 H 1.08999 * 109.47138 * 63.97168 * 21 19 18 45 45 H 1.07997 * 119.97962 * 359.97438 * 23 22 21 46 46 H 1.08008 * 119.98275 * 179.97438 * 24 23 22 47 47 H 1.08002 * 120.01428 * 180.02562 * 25 24 23 48 48 H 1.08008 * 120.01104 * 359.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7804 2.0228 0.5742 5 6 3.3185 1.3125 -0.7380 6 7 3.5157 0.5520 -1.7941 7 14 4.6116 2.5621 -0.2325 8 1 5.8066 2.4175 -1.1022 9 1 4.0582 3.9326 -0.3756 10 1 4.9983 2.3296 1.1823 11 6 2.1975 -1.2687 0.0006 12 6 2.5323 -1.6637 1.4403 13 1 3.1670 -0.9004 1.8904 14 6 1.2388 -1.7989 2.2498 15 6 1.5693 -2.3314 3.6463 16 6 2.2169 -3.7132 3.5305 17 6 3.5218 -3.5961 2.7365 18 7 3.2344 -2.9543 1.4464 19 6 3.6073 -3.5386 0.2905 20 8 3.4399 -2.9609 -0.7627 21 6 4.2324 -4.9098 0.3067 22 6 4.6435 -5.2910 -1.0921 23 6 5.9337 -5.0454 -1.5243 24 6 6.3120 -5.3941 -2.8073 25 6 5.4011 -5.9895 -3.6593 26 6 4.1091 -6.2363 -3.2275 27 9 3.2177 -6.8178 -4.0596 28 6 3.7326 -5.8910 -1.9403 29 1 -0.3633 -0.0262 -1.0274 30 1 -0.3633 -0.8765 0.5363 31 1 -0.3634 0.9029 0.4909 32 1 2.8120 -0.0393 -2.1041 33 1 1.5816 -2.0440 -0.4550 34 1 3.1199 -1.1559 -0.5691 35 1 0.7587 -0.8239 2.3339 36 1 0.5661 -2.4939 1.7473 37 1 0.6531 -2.4077 4.2320 38 1 2.2596 -1.6471 4.1395 39 1 1.5371 -4.3916 3.0151 40 1 2.4309 -4.0999 4.5268 41 1 3.9362 -4.5898 2.5659 42 1 4.2362 -2.9909 3.2946 43 1 5.1095 -4.9016 0.9538 44 1 3.5099 -5.6340 0.6832 45 1 6.6462 -4.5801 -0.8593 46 1 7.3200 -5.2014 -3.1439 47 1 5.6970 -6.2622 -4.6615 48 1 2.7262 -6.0872 -1.6009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158824856.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:06 Heat of formation + Delta-G solvation = -22.298454 kcal Electronic energy + Delta-G solvation = -30244.073215 eV Core-core repulsion = 26214.451247 eV Total energy + Delta-G solvation = -4029.621967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -48.82133 -40.31337 -38.90467 -36.98445 -35.62275 -33.08197 -32.41685 -31.54904 -30.53246 -30.35836 -27.92742 -26.46121 -25.19987 -24.28889 -22.79659 -22.59272 -21.81343 -20.52377 -20.31068 -18.60591 -17.35708 -17.20042 -16.43594 -16.21703 -16.11174 -15.61673 -15.47148 -15.02861 -14.32207 -14.15600 -14.00048 -13.90591 -13.61741 -13.58577 -13.38595 -13.28204 -13.08515 -12.82218 -12.73052 -12.49460 -12.03136 -11.87985 -11.63894 -11.52156 -11.16616 -11.07611 -11.03004 -10.98068 -10.67476 -10.65284 -10.41060 -10.11188 -10.07219 -9.97163 -9.22335 -8.98133 -8.70080 -8.49204 -8.23579 -8.03879 -6.58480 -5.82434 -3.21580 1.19048 1.26533 3.04559 3.27605 3.53981 3.56562 3.69856 3.75408 4.25473 4.58928 4.70316 4.74719 4.78410 4.89480 4.96716 5.01717 5.13633 5.19216 5.25325 5.36828 5.41929 5.47313 5.48252 5.54104 5.55262 5.74658 5.84720 5.90671 5.95338 6.00053 6.07639 6.13399 6.18875 6.22759 6.31723 6.39022 6.45992 6.49353 6.55940 6.61880 6.77046 6.88452 6.93103 6.99173 7.17478 7.79613 7.93304 8.24476 8.64575 8.80876 9.34296 10.00146 10.47682 11.32801 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009542 B = 0.004502 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.563918 B = 6218.332031 C = 7578.845446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.601 5.601 3 C -0.364 4.364 4 H 0.046 0.954 5 C -0.016 4.016 6 N -0.892 5.892 7 Si 1.059 2.941 8 H -0.286 1.286 9 H -0.293 1.293 10 H -0.294 1.294 11 C 0.146 3.854 12 C 0.129 3.871 13 H 0.069 0.931 14 C -0.120 4.120 15 C -0.121 4.121 16 C -0.132 4.132 17 C 0.106 3.894 18 N -0.609 5.609 19 C 0.504 3.496 20 O -0.497 6.497 21 C -0.104 4.104 22 C -0.031 4.031 23 C -0.115 4.115 24 C -0.088 4.088 25 C -0.157 4.157 26 C 0.097 3.903 27 F -0.143 7.143 28 C -0.136 4.136 29 H -0.002 1.002 30 H 0.024 0.976 31 H 0.032 0.968 32 H 0.274 0.726 33 H 0.030 0.970 34 H 0.116 0.884 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.127 0.873 46 H 0.132 0.868 47 H 0.132 0.868 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.365 -16.318 8.049 18.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.325 5.325 3 C -0.493 4.493 4 H 0.064 0.936 5 C -0.222 4.222 6 N -0.530 5.530 7 Si 0.889 3.111 8 H -0.211 1.211 9 H -0.220 1.220 10 H -0.222 1.222 11 C 0.020 3.980 12 C 0.025 3.975 13 H 0.087 0.913 14 C -0.158 4.158 15 C -0.158 4.158 16 C -0.170 4.170 17 C -0.018 4.018 18 N -0.344 5.344 19 C 0.290 3.710 20 O -0.370 6.370 21 C -0.144 4.144 22 C -0.032 4.032 23 C -0.133 4.133 24 C -0.106 4.106 25 C -0.175 4.175 26 C 0.078 3.922 27 F -0.122 7.122 28 C -0.155 4.155 29 H 0.016 0.984 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.134 0.866 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.145 0.855 46 H 0.150 0.850 47 H 0.150 0.850 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.735 -15.427 7.047 17.609 hybrid contribution -1.905 -0.571 0.484 2.047 sum 2.829 -15.998 7.531 17.907 Atomic orbital electron populations 1.21156 0.86622 0.97816 0.96920 1.44066 0.99651 1.02728 1.86067 1.19744 1.10057 0.91814 1.27697 0.93646 1.25880 1.00808 1.02205 0.93273 1.70700 1.38092 1.25424 1.18753 0.83634 0.76679 0.75348 0.75423 1.21126 1.22010 1.22155 1.21745 0.99971 0.85504 0.90795 1.22270 0.91437 0.81769 1.02045 0.91265 1.21947 0.98110 1.01530 0.94252 1.21556 1.00201 0.96057 0.98014 1.21894 0.97191 0.98192 0.99767 1.21701 0.97086 0.97867 0.85119 1.48329 1.58418 1.22697 1.04983 1.20361 0.79425 0.86998 0.84196 1.90907 1.52826 1.62685 1.30615 1.20793 1.02467 0.96301 0.94886 1.19117 0.93272 0.96080 0.94739 1.21062 0.95926 0.99747 0.96593 1.20937 0.99475 0.97015 0.93219 1.21094 0.92331 1.02938 1.01185 1.17619 0.87542 0.98420 0.88586 1.91480 1.67587 1.81974 1.71143 1.20901 1.00438 1.01537 0.92592 0.98432 0.95739 0.94948 0.91452 0.95122 0.86633 0.90204 0.92894 0.92409 0.92010 0.91826 0.91298 0.90299 0.91554 0.88151 0.88161 0.85461 0.85035 0.85013 0.85149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.76 9.73 59.85 0.58 3.34 16 2 N -0.60 -15.82 2.24 -181.12 -0.41 -16.23 16 3 C -0.36 -10.51 9.36 -15.06 -0.14 -10.65 16 4 H 0.05 1.33 7.95 -52.48 -0.42 0.91 16 5 C -0.02 -0.48 4.87 -17.43 -0.08 -0.57 16 6 N -0.89 -28.13 12.26 55.49 0.68 -27.45 16 7 Si 1.06 26.08 29.99 -169.99 -5.10 20.98 16 8 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 9 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 C 0.15 3.61 2.86 -4.04 -0.01 3.60 16 12 C 0.13 2.59 3.19 -67.60 -0.22 2.38 16 13 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 14 C -0.12 -2.04 4.03 -26.60 -0.11 -2.14 16 15 C -0.12 -1.55 5.88 -26.67 -0.16 -1.71 16 16 C -0.13 -1.39 6.09 -26.61 -0.16 -1.56 16 17 C 0.11 1.20 6.33 -3.71 -0.02 1.18 16 18 N -0.61 -9.96 2.97 -165.21 -0.49 -10.45 16 19 C 0.50 8.72 7.54 -10.98 -0.08 8.64 16 20 O -0.50 -11.27 11.57 5.55 0.06 -11.21 16 21 C -0.10 -1.25 4.22 -29.03 -0.12 -1.38 16 22 C -0.03 -0.43 4.38 -104.64 -0.46 -0.89 16 23 C -0.12 -1.48 9.68 -39.58 -0.38 -1.86 16 24 C -0.09 -1.06 10.04 -39.59 -0.40 -1.46 16 25 C -0.16 -1.99 10.03 -39.52 -0.40 -2.38 16 26 C 0.10 1.40 7.30 -39.42 -0.29 1.11 16 27 F -0.14 -2.11 17.27 2.25 0.04 -2.07 16 28 C -0.14 -1.92 9.70 -39.51 -0.38 -2.31 16 29 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 30 H 0.02 0.49 6.38 -51.93 -0.33 0.16 16 31 H 0.03 0.71 8.03 -51.93 -0.42 0.29 16 32 H 0.27 8.99 7.19 -40.82 -0.29 8.69 16 33 H 0.03 0.78 7.13 -51.93 -0.37 0.41 16 34 H 0.12 3.31 3.58 -51.93 -0.19 3.12 16 35 H 0.08 1.49 6.76 -51.93 -0.35 1.14 16 36 H 0.05 0.91 7.87 -51.93 -0.41 0.50 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.66 5.92 -51.93 -0.31 0.35 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 0.93 7.46 -51.93 -0.39 0.54 16 44 H 0.10 0.95 8.00 -51.93 -0.42 0.54 16 45 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 46 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 47 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 48 H 0.13 1.71 8.06 -52.48 -0.42 1.28 16 LS Contribution 378.33 15.07 5.70 5.70 Total: -1.00 -34.77 378.33 -9.67 -44.44 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.33 Total: 2.93 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -2.83 Total: -6.66 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.22 Total: -54.12 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.06 Total: -11.21 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -5.10 Total: 20.98 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.77 -9.67 -44.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158824856.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.146 kcal (2) G-P(sol) polarization free energy of solvation -34.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds