Wall clock time and date at job start Tue Mar 31 2020 18:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36931 * 119.99812 * 2 1 4 4 H 1.08005 * 120.00865 * 37.87250 * 3 2 1 5 5 C 1.38812 * 119.99970 * 217.87140 * 3 2 1 6 6 N 1.31630 * 119.99798 * 25.75935 * 5 3 2 7 7 Si 1.86793 * 120.00327 * 205.75803 * 5 3 2 8 8 H 1.48505 * 109.47418 * 175.00021 * 7 5 3 9 9 H 1.48492 * 109.47513 * 295.00166 * 7 5 3 10 10 H 1.48502 * 109.47266 * 55.00625 * 7 5 3 11 11 C 1.46497 * 120.00002 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47134 * 266.33960 * 11 2 1 13 13 H 1.08998 * 109.58516 * 298.72614 * 12 11 2 14 14 C 1.53187 * 109.58958 * 59.01255 * 12 11 2 15 15 C 1.53072 * 109.29976 * 174.27943 * 14 12 11 16 16 C 1.53043 * 109.65907 * 298.84754 * 15 14 12 17 17 C 1.53192 * 109.30982 * 61.29772 * 16 15 14 18 18 N 1.46926 * 109.58485 * 178.44520 * 12 11 2 19 19 C 1.34774 * 120.63218 * 6.58251 * 18 12 11 20 20 O 1.21283 * 120.00029 * 4.63989 * 19 18 12 21 21 C 1.50706 * 120.00062 * 184.64653 * 19 18 12 22 22 C 1.50697 * 109.47032 * 183.97690 * 21 19 18 23 23 C 1.38264 * 119.98810 * 93.89170 * 22 21 19 24 24 C 1.38227 * 120.04808 * 180.02562 * 23 22 21 25 25 C 1.38215 * 120.02872 * 359.95326 * 24 23 22 26 26 C 1.38438 * 119.97476 * 0.02562 * 25 24 23 27 27 F 1.35093 * 120.02723 * 179.97438 * 26 25 24 28 28 C 1.38176 * 119.98620 * 273.61556 * 22 21 19 29 29 H 1.09004 * 109.46813 * 91.46116 * 1 2 3 30 30 H 1.08994 * 109.47279 * 211.46062 * 1 2 3 31 31 H 1.09006 * 109.47352 * 331.46733 * 1 2 3 32 32 H 0.96998 * 119.99488 * 5.55190 * 6 5 3 33 33 H 1.09001 * 109.46806 * 26.33798 * 11 2 1 34 34 H 1.08995 * 109.47011 * 146.33704 * 11 2 1 35 35 H 1.09000 * 109.49626 * 294.37523 * 14 12 11 36 36 H 1.08997 * 109.49990 * 54.46731 * 14 12 11 37 37 H 1.09002 * 109.45556 * 178.75306 * 15 14 12 38 38 H 1.09002 * 109.33577 * 58.86160 * 15 14 12 39 39 H 1.08999 * 109.49685 * 301.34931 * 16 15 14 40 40 H 1.08995 * 109.52526 * 181.26146 * 16 15 14 41 41 H 1.09007 * 109.58807 * 185.58338 * 17 16 15 42 42 H 1.08999 * 109.59155 * 65.15404 * 17 16 15 43 43 H 1.09003 * 109.46613 * 303.97628 * 21 19 18 44 44 H 1.08999 * 109.47138 * 63.97168 * 21 19 18 45 45 H 1.07997 * 119.97962 * 359.97438 * 23 22 21 46 46 H 1.08008 * 119.98275 * 179.97438 * 24 23 22 47 47 H 1.08002 * 120.01428 * 180.02562 * 25 24 23 48 48 H 1.08008 * 120.01104 * 359.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7804 2.0228 0.5742 5 6 3.3185 1.3125 -0.7380 6 7 3.5157 0.5520 -1.7941 7 14 4.6116 2.5621 -0.2325 8 1 5.8066 2.4175 -1.1022 9 1 4.0582 3.9326 -0.3756 10 1 4.9983 2.3296 1.1823 11 6 2.1975 -1.2687 0.0006 12 6 2.5323 -1.6637 1.4403 13 1 3.1670 -0.9004 1.8904 14 6 1.2388 -1.7989 2.2498 15 6 1.5693 -2.3314 3.6463 16 6 2.2169 -3.7132 3.5305 17 6 3.5218 -3.5961 2.7365 18 7 3.2344 -2.9543 1.4464 19 6 3.6073 -3.5386 0.2905 20 8 3.4399 -2.9609 -0.7627 21 6 4.2324 -4.9098 0.3067 22 6 4.6435 -5.2910 -1.0921 23 6 5.9337 -5.0454 -1.5243 24 6 6.3120 -5.3941 -2.8073 25 6 5.4011 -5.9895 -3.6593 26 6 4.1091 -6.2363 -3.2275 27 9 3.2177 -6.8178 -4.0596 28 6 3.7326 -5.8910 -1.9403 29 1 -0.3633 -0.0262 -1.0274 30 1 -0.3633 -0.8765 0.5363 31 1 -0.3634 0.9029 0.4909 32 1 2.8120 -0.0393 -2.1041 33 1 1.5816 -2.0440 -0.4550 34 1 3.1199 -1.1559 -0.5691 35 1 0.7587 -0.8239 2.3339 36 1 0.5661 -2.4939 1.7473 37 1 0.6531 -2.4077 4.2320 38 1 2.2596 -1.6471 4.1395 39 1 1.5371 -4.3916 3.0151 40 1 2.4309 -4.0999 4.5268 41 1 3.9362 -4.5898 2.5659 42 1 4.2362 -2.9909 3.2946 43 1 5.1095 -4.9016 0.9538 44 1 3.5099 -5.6340 0.6832 45 1 6.6462 -4.5801 -0.8593 46 1 7.3200 -5.2014 -3.1439 47 1 5.6970 -6.2622 -4.6615 48 1 2.7262 -6.0872 -1.6009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158824856.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:05 Heat of formation + Delta-G solvation = -42.251741 kcal Electronic energy + Delta-G solvation = -30244.938454 eV Core-core repulsion = 26214.451247 eV Total energy + Delta-G solvation = -4030.487207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.92984 -41.62000 -39.96622 -38.34716 -37.46542 -34.33257 -33.56217 -33.39050 -32.04745 -31.48667 -29.03507 -28.03170 -27.26316 -25.59514 -24.05444 -23.72098 -23.12707 -22.12368 -21.60575 -19.86899 -19.35250 -18.27321 -17.69197 -17.41763 -17.13771 -17.01556 -16.60708 -16.34924 -15.90993 -15.69988 -15.45820 -15.25934 -15.11971 -14.95977 -14.74986 -14.61813 -14.37622 -14.02103 -13.94576 -13.91497 -13.20298 -13.10054 -13.01378 -12.90335 -12.82198 -12.61977 -12.52885 -12.31983 -12.00437 -11.95065 -11.86331 -11.84831 -11.60796 -11.42483 -11.29970 -10.44578 -10.25782 -9.87989 -9.61644 -9.43606 -8.80729 -8.07000 -5.51282 0.17192 0.25497 1.52890 1.61667 1.76496 1.80548 2.06127 2.63844 2.67999 3.23530 3.25333 3.59154 3.67232 3.80590 3.82773 3.94335 3.98594 4.07367 4.08385 4.19273 4.25611 4.32879 4.38659 4.47469 4.51852 4.57091 4.60570 4.61827 4.71505 4.80228 4.88536 4.91523 4.93976 5.02710 5.07530 5.09859 5.12901 5.14318 5.25538 5.27159 5.34567 5.47986 5.49958 5.59526 5.90633 5.94701 5.95430 6.38864 6.61016 7.14215 7.39818 7.83122 8.27720 8.97310 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009542 B = 0.004502 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.563918 B = 6218.332031 C = 7578.845446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.619 5.619 3 C -0.367 4.367 4 H 0.041 0.959 5 C -0.068 4.068 6 N -0.918 5.918 7 Si 1.110 2.890 8 H -0.292 1.292 9 H -0.273 1.273 10 H -0.275 1.275 11 C 0.158 3.842 12 C 0.140 3.860 13 H 0.039 0.961 14 C -0.110 4.110 15 C -0.116 4.116 16 C -0.126 4.126 17 C 0.097 3.903 18 N -0.609 5.609 19 C 0.494 3.506 20 O -0.562 6.562 21 C -0.090 4.090 22 C -0.045 4.045 23 C -0.125 4.125 24 C -0.091 4.091 25 C -0.162 4.162 26 C 0.071 3.929 27 F -0.152 7.152 28 C -0.151 4.151 29 H -0.017 1.017 30 H 0.050 0.950 31 H 0.039 0.961 32 H 0.250 0.750 33 H 0.011 0.989 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.074 0.926 43 H 0.138 0.862 44 H 0.133 0.867 45 H 0.146 0.854 46 H 0.160 0.840 47 H 0.151 0.849 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.675 -17.705 11.165 21.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.345 5.345 3 C -0.497 4.497 4 H 0.059 0.941 5 C -0.267 4.267 6 N -0.557 5.557 7 Si 0.934 3.066 8 H -0.218 1.218 9 H -0.199 1.199 10 H -0.201 1.201 11 C 0.033 3.967 12 C 0.034 3.966 13 H 0.058 0.942 14 C -0.149 4.149 15 C -0.154 4.154 16 C -0.164 4.164 17 C -0.024 4.024 18 N -0.343 5.343 19 C 0.283 3.717 20 O -0.440 6.440 21 C -0.129 4.129 22 C -0.046 4.046 23 C -0.143 4.143 24 C -0.109 4.109 25 C -0.180 4.180 26 C 0.052 3.948 27 F -0.131 7.131 28 C -0.170 4.170 29 H 0.001 0.999 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.029 0.971 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.125 0.875 41 H 0.137 0.863 42 H 0.092 0.908 43 H 0.155 0.845 44 H 0.150 0.850 45 H 0.164 0.836 46 H 0.178 0.822 47 H 0.169 0.831 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.024 -16.853 10.232 20.615 hybrid contribution -2.368 -0.150 -0.509 2.427 sum 3.656 -17.003 9.723 19.925 Atomic orbital electron populations 1.21182 0.85072 0.99424 0.96474 1.44338 1.00954 1.02745 1.86421 1.19963 1.10389 0.92619 1.26722 0.94112 1.27356 1.03224 1.03504 0.92644 1.70851 1.37291 1.26867 1.20694 0.82963 0.73918 0.73934 0.75764 1.21806 1.19914 1.20107 1.21428 0.97637 0.84178 0.93465 1.21670 0.92913 0.83360 0.98637 0.94248 1.21791 0.95907 1.00546 0.96635 1.21542 1.01459 0.97494 0.94894 1.21898 0.96285 0.96477 1.01699 1.22141 0.98161 0.99551 0.82580 1.48402 1.57517 1.21295 1.07126 1.21342 0.78510 0.88568 0.83315 1.90900 1.55459 1.64718 1.32943 1.20811 1.04242 0.92978 0.94883 1.19368 0.93540 0.96068 0.95623 1.21438 0.96168 0.99333 0.97337 1.21335 1.00649 0.96043 0.92892 1.21409 0.91803 1.02532 1.02288 1.17949 0.88313 0.99576 0.88957 1.91447 1.67993 1.82267 1.71390 1.21084 1.00860 1.02144 0.92944 0.99878 0.93105 0.94195 0.94008 0.97106 0.90164 0.92483 0.93319 0.90457 0.92148 0.91556 0.87480 0.86260 0.90803 0.84456 0.84958 0.83647 0.82204 0.83137 0.85030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.84 9.73 127.77 1.24 7.08 16 2 N -0.62 -33.97 2.24 -726.93 -1.63 -35.59 16 3 C -0.37 -21.85 9.36 84.03 0.79 -21.07 16 4 H 0.04 2.43 7.95 -2.91 -0.02 2.41 16 5 C -0.07 -4.14 4.87 84.86 0.41 -3.72 16 6 N -0.92 -60.53 12.26 21.65 0.27 -60.27 16 7 Si 1.11 53.33 29.99 68.60 2.06 55.38 16 8 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 11 C 0.16 8.24 2.86 86.38 0.25 8.48 16 12 C 0.14 5.70 3.19 44.97 0.14 5.84 16 13 H 0.04 1.82 8.14 -2.39 -0.02 1.81 16 14 C -0.11 -3.68 4.03 30.68 0.12 -3.55 16 15 C -0.12 -2.65 5.88 30.63 0.18 -2.47 16 16 C -0.13 -2.07 6.09 30.67 0.19 -1.88 16 17 C 0.10 1.81 6.33 86.36 0.55 2.36 16 18 N -0.61 -19.18 2.97 -795.00 -2.36 -21.54 16 19 C 0.49 16.85 7.54 87.66 0.66 17.51 16 20 O -0.56 -26.68 11.57 -3.04 -0.04 -26.72 16 21 C -0.09 -1.92 4.22 29.10 0.12 -1.79 16 22 C -0.05 -1.19 4.38 -19.87 -0.09 -1.27 16 23 C -0.12 -3.03 9.68 22.27 0.22 -2.81 16 24 C -0.09 -2.08 10.04 22.26 0.22 -1.86 16 25 C -0.16 -4.04 10.03 22.31 0.22 -3.82 16 26 C 0.07 2.08 7.30 22.38 0.16 2.24 16 27 F -0.15 -4.64 17.27 44.97 0.78 -3.87 16 28 C -0.15 -4.33 9.70 22.31 0.22 -4.11 16 29 H -0.02 -0.84 8.14 -2.38 -0.02 -0.86 16 30 H 0.05 2.09 6.38 -2.39 -0.02 2.07 16 31 H 0.04 1.79 8.03 -2.38 -0.02 1.77 16 32 H 0.25 17.46 7.19 -92.71 -0.67 16.80 16 33 H 0.01 0.58 7.13 -2.39 -0.02 0.56 16 34 H 0.08 4.87 3.58 -2.39 -0.01 4.87 16 35 H 0.06 2.13 6.76 -2.39 -0.02 2.12 16 36 H 0.05 1.64 7.87 -2.39 -0.02 1.62 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.12 1.30 5.92 -2.38 -0.01 1.29 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 43 H 0.14 1.91 7.46 -2.39 -0.02 1.89 16 44 H 0.13 1.98 8.00 -2.39 -0.02 1.96 16 45 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 46 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 47 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 48 H 0.13 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -83.14 378.33 5.74 -77.40 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 1.06 Total: 20.07 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 5.61 Total: -4.86 kcal Atomic # 7 Polarization: -113.68 SS G_CDS: -3.73 Total: -117.40 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.04 Total: -26.72 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.78 Total: -3.87 kcal Atomic # 14 Polarization: 53.33 SS G_CDS: 2.06 Total: 55.38 kcal Total: -83.14 5.74 -77.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158824856.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.148 kcal (2) G-P(sol) polarization free energy of solvation -83.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds