Wall clock time and date at job start Tue Mar 31 2020 18:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99635 * 2 1 4 4 C 1.52996 * 109.46904 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46472 * 299.97343 * 4 3 2 6 6 N 1.46500 * 109.47245 * 60.02565 * 5 4 3 7 7 C 1.34778 * 120.00205 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99826 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99790 * 180.02562 * 7 6 5 10 10 C 1.52998 * 109.46830 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47239 * 179.97438 * 10 9 7 12 12 F 1.39899 * 109.47076 * 65.00276 * 11 10 9 13 13 F 1.39898 * 109.47297 * 185.00179 * 11 10 9 14 14 C 1.53042 * 109.45834 * 179.97438 * 4 3 2 15 15 C 1.53192 * 109.31216 * 178.63240 * 14 4 3 16 16 N 1.46930 * 108.77834 * 54.63480 * 15 14 4 17 17 C 1.36932 * 120.62872 * 126.36699 * 16 15 14 18 18 H 1.08002 * 120.00663 * 332.45264 * 17 16 15 19 19 C 1.38819 * 119.99763 * 152.17982 * 17 16 15 20 20 N 1.31619 * 119.99653 * 343.16079 * 19 17 16 21 21 Si 1.86799 * 120.00056 * 163.16209 * 19 17 16 22 22 H 1.48498 * 109.47033 * 89.99898 * 21 19 17 23 23 H 1.48497 * 109.46906 * 209.99748 * 21 19 17 24 24 H 1.48496 * 109.47329 * 330.00182 * 21 19 17 25 25 C 1.46922 * 118.73694 * 306.64373 * 16 15 14 26 26 C 1.52760 * 109.00877 * 53.30539 * 25 16 15 27 27 H 1.08996 * 109.47883 * 299.99890 * 1 2 3 28 28 H 1.09002 * 109.47085 * 60.00353 * 1 2 3 29 29 H 1.09006 * 109.46724 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47185 * 59.99551 * 3 2 1 31 31 H 1.08991 * 109.47212 * 299.99475 * 3 2 1 32 32 H 1.09005 * 109.47339 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47024 * 300.02839 * 5 4 3 34 34 H 0.97003 * 119.99558 * 0.02562 * 6 5 4 35 35 H 1.08996 * 109.47372 * 299.99858 * 9 7 6 36 36 H 1.08995 * 109.47210 * 60.00188 * 9 7 6 37 37 H 1.09005 * 109.47339 * 300.00102 * 10 9 7 38 38 H 1.09004 * 109.47146 * 60.00279 * 10 9 7 39 39 H 1.08997 * 109.46910 * 305.00086 * 11 10 9 40 40 H 1.09002 * 109.49976 * 58.68163 * 14 4 3 41 41 H 1.09004 * 109.52502 * 298.59738 * 14 4 3 42 42 H 1.08997 * 109.58711 * 294.84701 * 15 14 4 43 43 H 1.09004 * 109.70548 * 174.49237 * 15 14 4 44 44 H 0.97007 * 119.99830 * 179.97438 * 20 19 17 45 45 H 1.08996 * 109.58958 * 173.14351 * 25 16 15 46 46 H 1.09005 * 109.58698 * 293.56931 * 25 16 15 47 47 H 1.08996 * 109.56719 * 185.54717 * 26 25 16 48 48 H 1.09007 * 109.38352 * 65.51663 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5353 1.1848 0.0006 5 6 3.9862 0.4263 1.2506 6 7 3.3908 -0.9122 1.2509 7 6 3.6490 -1.7644 2.2626 8 8 4.3747 -1.4233 3.1725 9 6 3.0369 -3.1415 2.2625 10 6 3.4877 -3.8999 3.5125 11 6 2.8658 -5.2979 3.5129 12 9 3.3684 -6.0321 2.4333 13 9 3.1846 -5.9498 4.7089 14 6 4.1575 2.5831 0.0000 15 6 5.6839 2.4584 0.0352 16 7 6.1147 1.6058 -1.0812 17 6 7.0602 2.0442 -1.9694 18 1 7.1781 3.1017 -2.1546 19 6 7.8710 1.1297 -2.6276 20 7 7.9743 -0.1024 -2.1764 21 14 8.8156 1.6479 -4.1537 22 1 10.1485 2.1690 -3.7575 23 1 8.9884 0.4767 -5.0502 24 1 8.0609 2.7098 -4.8663 25 6 5.5072 0.2763 -1.2300 26 6 3.9868 0.4232 -1.2477 27 1 -0.3635 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6884 1.8465 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 5.0729 0.3406 1.2514 33 1 3.6637 0.9676 2.1400 34 1 2.8107 -1.1851 0.5229 35 1 1.9503 -3.0562 2.2610 36 1 3.3602 -3.6827 1.3734 37 1 4.5744 -3.9853 3.5137 38 1 3.1648 -3.3589 4.4020 39 1 1.7829 -5.2137 3.4224 40 1 3.8171 3.1331 0.8773 41 1 3.8566 3.1152 -0.9025 42 1 5.9921 2.0083 0.9788 43 1 6.1356 3.4455 -0.0635 44 1 8.5406 -0.7415 -2.6366 45 1 5.8402 -0.1751 -2.1644 46 1 5.8007 -0.3554 -0.3915 47 1 3.5248 -0.5639 -1.2585 48 1 3.6870 0.9749 -2.1387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162356964.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:14 Heat of formation + Delta-G solvation = -174.296216 kcal Electronic energy + Delta-G solvation = -30722.861403 eV Core-core repulsion = 26255.879093 eV Total energy + Delta-G solvation = -4466.982309 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.08982 -47.10251 -40.05793 -38.70825 -37.14924 -34.57241 -33.79840 -33.01506 -30.92939 -29.98855 -27.81948 -27.70489 -26.05997 -25.20063 -23.86742 -22.47010 -22.18269 -20.90444 -20.05945 -18.48094 -17.76677 -17.53184 -16.99409 -16.63517 -16.27731 -15.88966 -15.68007 -15.60217 -15.33438 -15.10016 -14.65111 -14.10931 -13.92142 -13.80082 -13.63269 -13.47081 -13.38212 -13.14561 -12.89556 -12.77703 -12.58734 -12.33339 -12.10792 -11.94149 -11.65104 -11.46654 -11.39873 -11.26035 -11.05031 -10.92600 -10.70858 -10.55901 -10.26888 -10.19702 -9.93862 -9.77355 -9.57790 -9.53049 -9.41145 -8.60008 -8.42459 -6.64796 -5.77322 -3.19701 2.90172 3.25196 3.37885 3.45126 3.46817 3.62823 3.85797 4.14232 4.32181 4.44404 4.50392 4.91786 4.93002 5.00079 5.00697 5.15866 5.20107 5.25669 5.29762 5.40508 5.43918 5.49824 5.50640 5.55176 5.64291 5.69544 5.70846 5.87279 6.00299 6.04245 6.21802 6.35569 6.38087 6.58988 6.62214 6.69634 6.80003 6.86721 6.96564 7.06734 7.38027 7.68927 7.80551 7.93723 8.45988 8.56881 9.22551 9.85971 10.42435 11.31011 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.011110 B = 0.003320 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.702489 B = 8431.937816 C = 9909.680597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.072 3.928 4 C -0.059 4.059 5 C 0.132 3.868 6 N -0.706 5.706 7 C 0.509 3.491 8 O -0.552 6.552 9 C -0.140 4.140 10 C -0.155 4.155 11 C 0.262 3.738 12 F -0.206 7.206 13 F -0.208 7.208 14 C -0.119 4.119 15 C 0.143 3.857 16 N -0.591 5.591 17 C -0.254 4.254 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.900 5.900 21 Si 0.901 3.099 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.170 3.830 26 C -0.125 4.125 27 H 0.037 0.963 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.409 0.591 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.022 0.978 43 H 0.056 0.944 44 H 0.253 0.747 45 H 0.086 0.914 46 H 0.021 0.979 47 H 0.054 0.946 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.375 -4.236 7.408 20.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.004 4.004 4 C -0.060 4.060 5 C 0.008 3.992 6 N -0.362 5.362 7 C 0.294 3.706 8 O -0.431 6.431 9 C -0.181 4.181 10 C -0.194 4.194 11 C 0.208 3.792 12 F -0.187 7.187 13 F -0.189 7.189 14 C -0.159 4.159 15 C 0.016 3.984 16 N -0.314 5.314 17 C -0.383 4.383 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.730 3.270 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.045 3.955 26 C -0.165 4.165 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.250 0.750 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.040 0.960 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.104 0.896 46 H 0.039 0.961 47 H 0.073 0.927 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.619 -4.311 7.954 19.806 hybrid contribution 0.001 0.242 -1.175 1.199 sum -17.618 -4.069 6.779 19.310 Atomic orbital electron populations 1.22699 0.81417 1.02401 0.99815 1.87557 1.19267 1.28871 1.95331 1.22766 0.93940 0.83869 0.99823 1.20808 0.91382 0.97301 0.96501 1.21446 0.99541 0.81906 0.96293 1.46228 1.50109 1.14779 1.25110 1.20308 0.81433 0.86464 0.82380 1.90702 1.37965 1.77934 1.36489 1.21531 1.02209 0.94545 0.99777 1.22400 1.04290 0.92341 1.00346 1.21966 0.98986 0.87192 0.71057 1.92998 1.89957 1.79768 1.55986 1.92984 1.94887 1.83484 1.47539 1.21987 0.99351 0.93539 1.01019 1.20928 0.90561 0.95457 0.91405 1.44026 1.44622 1.14889 1.27829 1.19156 1.10392 0.92251 1.16549 0.91746 1.25037 0.97530 0.96614 1.00373 1.70040 1.40702 1.04442 1.39273 0.86330 0.79899 0.77478 0.83252 1.21429 1.21597 1.20559 1.20714 0.86363 0.86774 1.01689 1.22109 1.00902 0.98396 0.95045 0.94391 0.94160 0.89904 0.93617 0.93106 0.89778 0.92704 0.74955 0.88641 0.88030 0.88473 0.88081 0.87330 0.92733 0.91568 0.96028 0.92571 0.93649 0.89592 0.96089 0.92697 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.42 6.73 -35.23 -0.24 -4.65 16 3 C 0.07 0.88 4.80 37.16 0.18 1.06 16 4 C -0.06 -0.90 0.51 -154.47 -0.08 -0.98 16 5 C 0.13 2.15 3.80 -4.04 -0.02 2.13 16 6 N -0.71 -10.26 4.62 -60.30 -0.28 -10.54 16 7 C 0.51 7.52 7.83 -10.99 -0.09 7.44 16 8 O -0.55 -10.36 15.98 5.56 0.09 -10.27 16 9 C -0.14 -1.42 5.62 -27.89 -0.16 -1.57 16 10 C -0.16 -1.57 4.73 -26.73 -0.13 -1.70 16 11 C 0.26 2.30 5.29 37.16 0.20 2.49 16 12 F -0.21 -2.27 17.02 2.25 0.04 -2.24 16 13 F -0.21 -2.26 17.34 2.25 0.04 -2.22 16 14 C -0.12 -1.89 4.91 -26.61 -0.13 -2.02 16 15 C 0.14 2.88 6.05 -3.71 -0.02 2.85 16 16 N -0.59 -14.35 3.00 -172.58 -0.52 -14.87 16 17 C -0.25 -6.86 9.58 -15.06 -0.14 -7.00 16 18 H 0.06 1.71 7.88 -52.49 -0.41 1.29 16 19 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 20 N -0.90 -26.10 11.18 55.49 0.62 -25.48 16 21 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.17 3.92 4.81 -3.93 -0.02 3.91 16 26 C -0.13 -2.23 4.57 -26.83 -0.12 -2.35 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.69 4.99 -51.93 -0.26 1.43 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.41 5.37 4.70 -40.82 -0.19 5.18 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.98 7.93 -51.93 -0.41 0.57 16 37 H 0.10 1.19 8.10 -51.93 -0.42 0.77 16 38 H 0.10 0.99 8.10 -51.93 -0.42 0.57 16 39 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.02 0.45 6.69 -51.93 -0.35 0.11 16 43 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.09 2.26 6.05 -51.93 -0.31 1.95 16 46 H 0.02 0.53 6.70 -51.93 -0.35 0.18 16 47 H 0.05 0.91 6.49 -51.93 -0.34 0.57 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 378.67 15.07 5.71 5.71 Total: -1.00 -32.29 378.67 -6.73 -39.02 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -7.66 Total: 3.36 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 0.50 Total: 5.64 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.18 Total: -50.88 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.15 Total: -14.92 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.08 Total: -4.46 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.29 -6.73 -39.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162356964.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.272 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds