Wall clock time and date at job start Tue Mar 31 2020 18:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99635 * 2 1 4 4 C 1.52996 * 109.46904 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46472 * 299.97343 * 4 3 2 6 6 N 1.46500 * 109.47245 * 60.02565 * 5 4 3 7 7 C 1.34778 * 120.00205 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99826 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99790 * 180.02562 * 7 6 5 10 10 C 1.52998 * 109.46830 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47239 * 179.97438 * 10 9 7 12 12 F 1.39899 * 109.47076 * 65.00276 * 11 10 9 13 13 F 1.39898 * 109.47297 * 185.00179 * 11 10 9 14 14 C 1.53042 * 109.45834 * 179.97438 * 4 3 2 15 15 C 1.53192 * 109.31216 * 178.63240 * 14 4 3 16 16 N 1.46930 * 108.77834 * 54.63480 * 15 14 4 17 17 C 1.36932 * 120.62872 * 126.36699 * 16 15 14 18 18 H 1.08002 * 120.00663 * 332.45264 * 17 16 15 19 19 C 1.38819 * 119.99763 * 152.17982 * 17 16 15 20 20 N 1.31619 * 119.99653 * 343.16079 * 19 17 16 21 21 Si 1.86799 * 120.00056 * 163.16209 * 19 17 16 22 22 H 1.48498 * 109.47033 * 89.99898 * 21 19 17 23 23 H 1.48497 * 109.46906 * 209.99748 * 21 19 17 24 24 H 1.48496 * 109.47329 * 330.00182 * 21 19 17 25 25 C 1.46922 * 118.73694 * 306.64373 * 16 15 14 26 26 C 1.52760 * 109.00877 * 53.30539 * 25 16 15 27 27 H 1.08996 * 109.47883 * 299.99890 * 1 2 3 28 28 H 1.09002 * 109.47085 * 60.00353 * 1 2 3 29 29 H 1.09006 * 109.46724 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47185 * 59.99551 * 3 2 1 31 31 H 1.08991 * 109.47212 * 299.99475 * 3 2 1 32 32 H 1.09005 * 109.47339 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47024 * 300.02839 * 5 4 3 34 34 H 0.97003 * 119.99558 * 0.02562 * 6 5 4 35 35 H 1.08996 * 109.47372 * 299.99858 * 9 7 6 36 36 H 1.08995 * 109.47210 * 60.00188 * 9 7 6 37 37 H 1.09005 * 109.47339 * 300.00102 * 10 9 7 38 38 H 1.09004 * 109.47146 * 60.00279 * 10 9 7 39 39 H 1.08997 * 109.46910 * 305.00086 * 11 10 9 40 40 H 1.09002 * 109.49976 * 58.68163 * 14 4 3 41 41 H 1.09004 * 109.52502 * 298.59738 * 14 4 3 42 42 H 1.08997 * 109.58711 * 294.84701 * 15 14 4 43 43 H 1.09004 * 109.70548 * 174.49237 * 15 14 4 44 44 H 0.97007 * 119.99830 * 179.97438 * 20 19 17 45 45 H 1.08996 * 109.58958 * 173.14351 * 25 16 15 46 46 H 1.09005 * 109.58698 * 293.56931 * 25 16 15 47 47 H 1.08996 * 109.56719 * 185.54717 * 26 25 16 48 48 H 1.09007 * 109.38352 * 65.51663 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5353 1.1848 0.0006 5 6 3.9862 0.4263 1.2506 6 7 3.3908 -0.9122 1.2509 7 6 3.6490 -1.7644 2.2626 8 8 4.3747 -1.4233 3.1725 9 6 3.0369 -3.1415 2.2625 10 6 3.4877 -3.8999 3.5125 11 6 2.8658 -5.2979 3.5129 12 9 3.3684 -6.0321 2.4333 13 9 3.1846 -5.9498 4.7089 14 6 4.1575 2.5831 0.0000 15 6 5.6839 2.4584 0.0352 16 7 6.1147 1.6058 -1.0812 17 6 7.0602 2.0442 -1.9694 18 1 7.1781 3.1017 -2.1546 19 6 7.8710 1.1297 -2.6276 20 7 7.9743 -0.1024 -2.1764 21 14 8.8156 1.6479 -4.1537 22 1 10.1485 2.1690 -3.7575 23 1 8.9884 0.4767 -5.0502 24 1 8.0609 2.7098 -4.8663 25 6 5.5072 0.2763 -1.2300 26 6 3.9868 0.4232 -1.2477 27 1 -0.3635 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6884 1.8465 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 5.0729 0.3406 1.2514 33 1 3.6637 0.9676 2.1400 34 1 2.8107 -1.1851 0.5229 35 1 1.9503 -3.0562 2.2610 36 1 3.3602 -3.6827 1.3734 37 1 4.5744 -3.9853 3.5137 38 1 3.1648 -3.3589 4.4020 39 1 1.7829 -5.2137 3.4224 40 1 3.8171 3.1331 0.8773 41 1 3.8566 3.1152 -0.9025 42 1 5.9921 2.0083 0.9788 43 1 6.1356 3.4455 -0.0635 44 1 8.5406 -0.7415 -2.6366 45 1 5.8402 -0.1751 -2.1644 46 1 5.8007 -0.3554 -0.3915 47 1 3.5248 -0.5639 -1.2585 48 1 3.6870 0.9749 -2.1387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162356964.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:13 Heat of formation + Delta-G solvation = -195.337029 kcal Electronic energy + Delta-G solvation = -30723.773801 eV Core-core repulsion = 26255.879093 eV Total energy + Delta-G solvation = -4467.894708 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.85888 -47.88997 -41.31105 -39.94221 -38.25472 -36.08905 -34.73515 -34.51912 -32.68162 -31.63027 -29.03306 -28.73251 -27.14861 -26.27419 -25.46530 -23.90413 -23.16739 -22.49673 -21.23089 -19.89839 -18.84821 -18.48029 -18.15357 -17.82754 -17.10920 -17.05900 -16.86900 -16.67004 -16.60727 -16.25946 -16.06509 -15.36528 -15.30356 -15.12326 -14.90542 -14.68863 -14.50001 -14.28389 -14.17148 -14.01908 -13.70910 -13.40535 -13.27767 -13.04817 -13.00833 -12.92854 -12.64480 -12.52552 -12.28542 -12.26631 -12.19369 -11.98638 -11.82337 -11.78401 -11.43800 -11.21429 -11.09836 -10.82459 -10.53782 -10.45411 -9.86278 -8.64807 -7.86062 -5.31295 1.46140 1.47154 1.57123 1.74306 2.23012 2.51783 2.82211 3.08366 3.28916 3.42960 3.55048 3.68222 3.69054 3.75751 3.92643 4.01042 4.07608 4.28118 4.29604 4.39113 4.49140 4.53683 4.56685 4.59733 4.65601 4.70725 4.73207 4.77430 4.86625 4.91100 4.93382 4.99134 5.04831 5.06133 5.18427 5.25847 5.29896 5.38265 5.50460 5.64552 5.69188 5.80782 6.29344 6.39902 6.78964 7.16400 7.43292 7.88563 8.39726 9.19955 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.011110 B = 0.003320 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.702489 B = 8431.937816 C = 9909.680597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.407 6.407 3 C 0.083 3.917 4 C -0.052 4.052 5 C 0.140 3.860 6 N -0.699 5.699 7 C 0.500 3.500 8 O -0.600 6.600 9 C -0.130 4.130 10 C -0.154 4.154 11 C 0.263 3.737 12 F -0.220 7.220 13 F -0.221 7.221 14 C -0.108 4.108 15 C 0.138 3.862 16 N -0.609 5.609 17 C -0.261 4.261 18 H 0.068 0.932 19 C -0.052 4.052 20 N -0.936 5.936 21 Si 0.966 3.034 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.267 1.267 25 C 0.182 3.818 26 C -0.109 4.109 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.036 0.964 33 H 0.061 0.939 34 H 0.418 0.582 35 H 0.141 0.859 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.104 0.896 39 H 0.161 0.839 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.007 0.993 43 H 0.056 0.944 44 H 0.248 0.752 45 H 0.047 0.953 46 H -0.012 1.012 47 H 0.068 0.932 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.954 -3.655 7.117 23.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.326 6.326 3 C 0.006 3.994 4 C -0.053 4.053 5 C 0.015 3.985 6 N -0.356 5.356 7 C 0.288 3.712 8 O -0.482 6.482 9 C -0.169 4.169 10 C -0.193 4.193 11 C 0.210 3.790 12 F -0.202 7.202 13 F -0.203 7.203 14 C -0.148 4.148 15 C 0.012 3.988 16 N -0.333 5.333 17 C -0.392 4.392 18 H 0.086 0.914 19 C -0.248 4.248 20 N -0.583 5.583 21 Si 0.794 3.206 22 H -0.214 1.214 23 H -0.220 1.220 24 H -0.192 1.192 25 C 0.057 3.943 26 C -0.148 4.148 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.261 0.739 35 H 0.159 0.841 36 H 0.126 0.874 37 H 0.082 0.918 38 H 0.122 0.878 39 H 0.178 0.822 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.025 0.975 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.065 0.935 46 H 0.006 0.994 47 H 0.087 0.913 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.245 -3.714 7.652 22.885 hybrid contribution 1.147 0.076 -1.007 1.528 sum -20.098 -3.637 6.645 21.479 Atomic orbital electron populations 1.22909 0.79265 1.03976 1.00560 1.87496 1.21407 1.28194 1.95509 1.22531 0.90811 0.84755 1.01279 1.20697 0.94336 0.96123 0.94140 1.21195 0.96809 0.83281 0.97192 1.46199 1.49806 1.14180 1.25377 1.21196 0.80638 0.87988 0.81423 1.90681 1.40057 1.79129 1.38318 1.21551 1.04530 0.91046 0.99820 1.22352 1.02479 0.93745 1.00684 1.22329 1.01250 0.85495 0.69953 1.92972 1.90441 1.80057 1.56693 1.92957 1.95192 1.83661 1.48473 1.21842 0.95520 0.94503 1.02905 1.21082 0.93987 0.94354 0.89361 1.44306 1.44616 1.15552 1.28793 1.19539 1.10418 0.92505 1.16713 0.91399 1.25808 0.98993 0.96707 1.03252 1.70220 1.41917 1.05548 1.40580 0.85296 0.78482 0.77052 0.79734 1.21431 1.22026 1.19208 1.20434 0.89942 0.85797 0.98175 1.21855 0.96533 0.99771 0.96628 0.93452 0.93566 0.88030 0.91799 0.91971 0.94604 0.92113 0.73866 0.84093 0.87380 0.91760 0.87795 0.82207 0.89377 0.90907 0.97490 0.92574 0.94326 0.93473 0.99368 0.91344 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.58 16 2 O -0.41 -7.64 6.73 -148.98 -1.00 -8.64 16 3 C 0.08 1.71 4.80 71.98 0.35 2.05 16 4 C -0.05 -1.51 0.51 -52.16 -0.03 -1.54 16 5 C 0.14 4.54 3.80 86.38 0.33 4.87 16 6 N -0.70 -19.70 4.62 -463.06 -2.14 -21.84 16 7 C 0.50 14.59 7.83 87.66 0.69 15.28 16 8 O -0.60 -23.20 15.98 -3.03 -0.05 -23.25 16 9 C -0.13 -2.35 5.62 29.85 0.17 -2.18 16 10 C -0.15 -2.98 4.73 30.59 0.14 -2.83 16 11 C 0.26 4.04 5.29 71.98 0.38 4.42 16 12 F -0.22 -4.54 17.02 44.97 0.77 -3.78 16 13 F -0.22 -4.55 17.34 44.97 0.78 -3.77 16 14 C -0.11 -3.24 4.91 30.67 0.15 -3.09 16 15 C 0.14 5.61 6.05 86.36 0.52 6.14 16 16 N -0.61 -30.55 3.00 -699.92 -2.10 -32.65 16 17 C -0.26 -14.46 9.58 84.04 0.81 -13.65 16 18 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 19 C -0.05 -2.97 4.92 84.86 0.42 -2.56 16 20 N -0.94 -56.86 11.18 21.65 0.24 -56.61 16 21 Si 0.97 45.36 29.59 68.60 2.03 47.39 16 22 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 23 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 C 0.18 8.78 4.81 86.22 0.41 9.19 16 26 C -0.11 -3.83 4.57 30.53 0.14 -3.69 16 27 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.04 1.52 4.99 -2.38 -0.01 1.51 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.42 10.13 4.70 -92.71 -0.44 9.69 16 35 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.11 1.88 7.93 -2.39 -0.02 1.86 16 37 H 0.06 1.65 8.10 -2.38 -0.02 1.63 16 38 H 0.10 1.95 8.10 -2.38 -0.02 1.93 16 39 H 0.16 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.01 0.31 6.69 -2.39 -0.02 0.30 16 43 H 0.06 2.24 7.93 -2.39 -0.02 2.22 16 44 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 45 H 0.05 2.62 6.05 -2.39 -0.01 2.60 16 46 H -0.01 -0.63 6.70 -2.38 -0.02 -0.64 16 47 H 0.07 2.20 6.49 -2.39 -0.02 2.19 16 48 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -75.97 378.67 4.78 -71.19 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.53 Total: 17.98 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 5.73 Total: 13.99 kcal Atomic # 7 Polarization: -107.10 SS G_CDS: -4.00 Total: -111.10 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -1.05 Total: -31.90 kcal Atomic # 9 Polarization: -9.09 SS G_CDS: 1.54 Total: -7.55 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -75.97 4.78 -71.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162356964.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.143 kcal (2) G-P(sol) polarization free energy of solvation -75.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds