Wall clock time and date at job start Tue Mar 31 2020 19:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99809 * 2 1 4 4 H 1.48503 * 109.46681 * 269.99852 * 3 2 1 5 5 H 1.48504 * 109.47044 * 29.99460 * 3 2 1 6 6 H 1.48496 * 109.47250 * 149.99867 * 3 2 1 7 7 C 1.38806 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00419 * 0.02562 * 7 2 1 9 9 N 1.36942 * 120.00038 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00013 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46947 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.33850 * 55.80795 * 11 10 9 13 13 C 1.54518 * 110.37839 * 293.54280 * 11 10 9 14 14 N 1.48192 * 104.63452 * 217.39455 * 13 11 10 15 15 C 1.34771 * 127.79684 * 219.25752 * 14 13 11 16 16 O 1.21620 * 119.99909 * 180.02562 * 15 14 13 17 17 C 1.47098 * 120.00484 * 0.02562 * 15 14 13 18 18 C 1.32995 * 120.00466 * 179.97438 * 17 15 14 19 19 C 1.50697 * 120.00051 * 180.02562 * 18 17 15 20 20 C 1.53000 * 117.49504 * 171.38345 * 19 18 17 21 21 C 1.52997 * 60.00347 * 107.48912 * 20 19 18 22 22 C 1.48260 * 104.39828 * 39.52337 * 14 13 11 23 23 C 1.53783 * 110.37578 * 178.18694 * 11 10 9 24 24 C 1.52589 * 110.28368 * 0.02562 * 23 11 10 25 25 C 1.53198 * 109.19867 * 182.30082 * 24 23 11 26 26 O 1.42903 * 109.34807 * 56.66674 * 25 24 23 27 27 C 1.42916 * 114.22147 * 298.39425 * 26 25 24 28 28 C 1.52595 * 110.26746 * 237.86233 * 23 11 10 29 29 H 0.96999 * 120.00197 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99680 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47350 * 60.00086 * 10 9 7 32 32 H 1.09000 * 109.47138 * 299.99880 * 10 9 7 33 33 H 1.09000 * 110.39921 * 98.60543 * 13 11 10 34 34 H 1.09004 * 110.50089 * 336.23431 * 13 11 10 35 35 H 1.08006 * 119.99933 * 0.02562 * 17 15 14 36 36 H 1.08006 * 119.99601 * 0.02562 * 18 17 15 37 37 H 1.08990 * 115.56356 * 25.69516 * 19 18 17 38 38 H 1.09002 * 117.49696 * 214.98125 * 20 19 18 39 39 H 1.09002 * 117.50343 * 0.02562 * 20 19 18 40 40 H 1.08999 * 117.49685 * 252.51237 * 21 20 19 41 41 H 1.08997 * 117.50044 * 107.48590 * 21 20 19 42 42 H 1.08998 * 110.43130 * 79.37713 * 22 14 13 43 43 H 1.08996 * 110.42741 * 201.86889 * 22 14 13 44 44 H 1.08998 * 109.51579 * 302.21461 * 24 23 11 45 45 H 1.08999 * 109.51369 * 62.38101 * 24 23 11 46 46 H 1.09000 * 109.49027 * 296.70606 * 25 24 23 47 47 H 1.08998 * 109.49707 * 176.63363 * 25 24 23 48 48 H 1.09005 * 109.49655 * 301.65814 * 27 26 25 49 49 H 1.09000 * 109.49925 * 181.57298 * 27 26 25 50 50 H 1.09003 * 109.51407 * 297.63983 * 28 23 11 51 51 H 1.08992 * 109.51706 * 57.80625 * 28 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1912 0.0011 12 1 5.8839 -1.5572 0.8464 13 6 6.0397 -1.5240 -1.3268 14 7 7.3670 -2.1078 -1.6328 15 6 8.4452 -1.4837 -2.1467 16 8 9.4718 -2.1056 -2.3427 17 6 8.3805 -0.0503 -2.4707 18 6 9.4447 0.5658 -2.9774 19 6 9.3785 2.0344 -3.3088 20 6 10.6846 2.7307 -3.6962 21 6 9.6260 2.4425 -4.7625 22 6 7.2387 -3.5349 -1.2519 23 6 6.4062 -3.5099 0.0467 24 6 5.4498 -4.6985 0.0775 25 6 6.2600 -5.9946 0.1806 26 8 7.0964 -5.9392 1.3380 27 6 8.0553 -4.8797 1.3183 28 6 7.3240 -3.5345 1.2655 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3620 0.0007 31 1 3.8492 -3.0422 -0.8891 32 1 3.8485 -3.0425 0.8908 33 1 6.1193 -0.4442 -1.2011 34 1 5.3283 -1.7623 -2.1176 35 1 7.4690 0.5022 -2.2963 36 1 10.3564 0.0134 -3.1514 37 1 8.6494 2.6122 -2.7410 38 1 10.8147 3.7666 -3.3832 39 1 11.5917 2.1264 -3.7119 40 1 9.8366 1.6486 -5.4791 41 1 9.0595 3.2888 -5.1510 42 1 6.7166 -4.0910 -2.0305 43 1 8.2211 -3.9690 -1.0667 44 1 4.7894 -4.6122 0.9404 45 1 4.8561 -4.7118 -0.8365 46 1 6.8782 -6.1088 -0.7098 47 1 5.5805 -6.8428 0.2632 48 1 8.6925 -4.9820 0.4397 49 1 8.6672 -4.9259 2.2191 50 1 8.0520 -2.7268 1.1894 51 1 6.7306 -3.4069 2.1708 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186320503.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:25 Heat of formation + Delta-G solvation = -20.543705 kcal Electronic energy + Delta-G solvation = -29852.990478 eV Core-core repulsion = 25946.904908 eV Total energy + Delta-G solvation = -3906.085570 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.02950 -39.23097 -37.87711 -37.35835 -34.85524 -33.55063 -32.56408 -31.80581 -31.23007 -29.68223 -27.50690 -25.88218 -24.78671 -23.82957 -23.56667 -22.72227 -22.03429 -20.91485 -20.36356 -18.96846 -18.67937 -17.67548 -17.26036 -16.25077 -16.14572 -15.99266 -15.78912 -15.46941 -14.96425 -14.67858 -14.55524 -14.52219 -14.11364 -13.95206 -13.47414 -13.06029 -12.92695 -12.79979 -12.56524 -12.33237 -12.29924 -12.05195 -11.93332 -11.74399 -11.71628 -11.43361 -11.41873 -11.23747 -11.16965 -10.93464 -10.80976 -10.67980 -10.34856 -10.18082 -10.07581 -9.92938 -9.65098 -9.45761 -9.37170 -8.95181 -8.72445 -7.30005 -5.82512 -3.18756 1.14914 2.87988 3.14635 3.30593 3.32014 3.39680 3.61405 3.80921 4.13753 4.37335 4.43889 4.51824 4.52286 4.53048 4.62448 4.73822 4.92122 4.94080 4.96529 5.04006 5.08944 5.11533 5.21701 5.27986 5.30998 5.36949 5.46588 5.49132 5.50606 5.51550 5.59670 5.61263 5.66931 5.73595 5.74350 5.78230 5.82149 5.90692 5.96821 6.03598 6.08424 6.15951 6.18050 6.24269 6.34780 6.59101 6.65053 7.12342 7.49810 7.92833 8.10225 8.36109 9.14498 9.86690 10.05598 11.35878 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.006298 B = 0.004783 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4445.078540 B = 5852.218753 C = 9782.108706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.166 3.834 11 C -0.102 4.102 12 H 0.084 0.916 13 C 0.105 3.895 14 N -0.616 5.616 15 C 0.569 3.431 16 O -0.555 6.555 17 C -0.208 4.208 18 C -0.036 4.036 19 C -0.141 4.141 20 C -0.171 4.171 21 C -0.165 4.165 22 C 0.112 3.888 23 C -0.063 4.063 24 C -0.146 4.146 25 C 0.058 3.942 26 O -0.383 6.383 27 C 0.060 3.940 28 C -0.139 4.139 29 H 0.260 0.740 30 H 0.359 0.641 31 H 0.033 0.967 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.048 0.952 47 H 0.095 0.905 48 H 0.050 0.950 49 H 0.092 0.908 50 H 0.072 0.928 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.304 -2.754 -4.319 20.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.712 3.288 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.402 5.402 10 C 0.039 3.961 11 C -0.122 4.122 12 H 0.102 0.898 13 C -0.017 4.017 14 N -0.348 5.348 15 C 0.360 3.640 16 O -0.436 6.436 17 C -0.229 4.229 18 C -0.056 4.056 19 C -0.159 4.159 20 C -0.208 4.208 21 C -0.202 4.202 22 C -0.010 4.010 23 C -0.065 4.065 24 C -0.184 4.184 25 C -0.018 4.018 26 O -0.302 6.302 27 C -0.017 4.017 28 C -0.177 4.177 29 H 0.070 0.930 30 H 0.192 0.808 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.134 0.866 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.102 0.898 46 H 0.066 0.934 47 H 0.113 0.887 48 H 0.068 0.932 49 H 0.110 0.890 50 H 0.090 0.910 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 20.664 -3.246 -4.315 21.358 hybrid contribution 0.289 1.635 -0.161 1.668 sum 20.954 -1.611 -4.475 21.487 Atomic orbital electron populations 1.69696 1.05107 1.25854 1.57408 1.24665 0.95194 0.97134 1.01977 0.86592 0.79269 0.85182 0.77756 1.21030 1.21688 1.20375 1.19037 0.80534 0.94745 1.43154 0.89153 1.42745 1.04111 1.02126 1.91236 1.20829 0.86751 0.89355 0.99154 1.22362 0.97015 0.95376 0.97417 0.89781 1.22645 0.82912 0.98706 0.97443 1.48906 1.12486 1.10959 1.62481 1.18123 0.81654 0.87455 0.76724 1.90764 1.30062 1.67813 1.54930 1.22533 1.00605 0.93805 1.05940 1.23022 0.97866 0.93318 0.91358 1.21340 1.01536 0.93416 0.99635 1.23012 0.92907 1.01617 1.03237 1.22984 1.02763 1.03445 0.91021 1.22558 1.00615 0.82426 0.95421 1.21123 0.95199 0.95629 0.94504 1.22326 0.98145 0.93346 1.04601 1.22682 0.92975 0.98029 0.88133 1.87913 1.49180 1.50957 1.42106 1.22640 0.90668 0.86431 1.01944 1.22145 0.99160 0.98136 0.98225 0.93010 0.80833 0.94935 0.94637 0.90303 0.89790 0.85394 0.85535 0.86608 0.88237 0.88340 0.88350 0.88093 0.90822 0.89937 0.89399 0.89751 0.93406 0.88714 0.93173 0.88995 0.90976 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.62 13.97 55.49 0.78 -27.85 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 21.22 27.74 -169.99 -4.71 16.50 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.22 6.52 56.52 0.37 -5.85 16 7 C -0.24 -6.62 10.47 -15.06 -0.16 -6.78 16 8 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 9 N -0.76 -16.63 5.24 -59.91 -0.31 -16.94 16 10 C 0.17 2.85 4.39 -4.04 -0.02 2.84 16 11 C -0.10 -1.41 2.77 -89.41 -0.25 -1.65 16 12 H 0.08 1.20 7.71 -51.93 -0.40 0.80 16 13 C 0.11 1.41 6.09 -2.31 -0.01 1.40 16 14 N -0.62 -8.18 3.32 -170.56 -0.57 -8.75 16 15 C 0.57 8.17 7.86 -12.67 -0.10 8.07 16 16 O -0.56 -9.45 16.49 5.26 0.09 -9.37 16 17 C -0.21 -2.50 9.19 -37.81 -0.35 -2.84 16 18 C -0.04 -0.38 9.24 -36.13 -0.33 -0.72 16 19 C -0.14 -1.22 6.01 -91.77 -0.55 -1.78 16 20 C -0.17 -1.22 10.23 -26.73 -0.27 -1.49 16 21 C -0.17 -1.23 10.23 -26.73 -0.27 -1.51 16 22 C 0.11 1.36 5.12 -2.41 -0.01 1.35 16 23 C -0.06 -0.74 0.69 -153.85 -0.11 -0.85 16 24 C -0.15 -1.65 3.63 -26.84 -0.10 -1.74 16 25 C 0.06 0.60 6.65 37.26 0.25 0.85 16 26 O -0.38 -4.62 10.75 -35.23 -0.38 -5.00 16 27 C 0.06 0.63 6.64 37.26 0.25 0.88 16 28 C -0.14 -1.56 4.69 -26.83 -0.13 -1.69 16 29 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.36 7.69 5.38 -40.82 -0.22 7.47 16 31 H 0.03 0.56 6.88 -51.93 -0.36 0.20 16 32 H 0.04 0.63 6.62 -51.93 -0.34 0.29 16 33 H 0.08 1.02 6.71 -51.93 -0.35 0.67 16 34 H 0.08 1.18 7.81 -51.93 -0.41 0.77 16 35 H 0.13 1.40 6.73 -52.48 -0.35 1.05 16 36 H 0.13 1.41 7.49 -52.48 -0.39 1.02 16 37 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.84 7.78 -51.93 -0.40 0.44 16 43 H 0.08 1.03 5.94 -51.93 -0.31 0.73 16 44 H 0.09 1.09 6.60 -51.93 -0.34 0.75 16 45 H 0.08 0.93 6.87 -51.93 -0.36 0.57 16 46 H 0.05 0.45 7.54 -51.93 -0.39 0.06 16 47 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.05 0.52 6.53 -51.93 -0.34 0.18 16 49 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 393.87 15.07 5.94 5.94 Total: -1.00 -32.45 393.87 -9.79 -42.24 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -8.36 Total: 8.81 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -2.26 Total: -5.58 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.10 Total: -53.54 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.29 Total: -14.37 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.71 Total: 16.50 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.45 -9.79 -42.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186320503.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.698 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds