Wall clock time and date at job start Tue Mar 31 2020 19:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99809 * 2 1 4 4 H 1.48503 * 109.46681 * 269.99852 * 3 2 1 5 5 H 1.48504 * 109.47044 * 29.99460 * 3 2 1 6 6 H 1.48496 * 109.47250 * 149.99867 * 3 2 1 7 7 C 1.38806 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00419 * 0.02562 * 7 2 1 9 9 N 1.36942 * 120.00038 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00013 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46947 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.33850 * 55.80795 * 11 10 9 13 13 C 1.54518 * 110.37839 * 293.54280 * 11 10 9 14 14 N 1.48192 * 104.63452 * 217.39455 * 13 11 10 15 15 C 1.34771 * 127.79684 * 219.25752 * 14 13 11 16 16 O 1.21620 * 119.99909 * 180.02562 * 15 14 13 17 17 C 1.47098 * 120.00484 * 0.02562 * 15 14 13 18 18 C 1.32995 * 120.00466 * 179.97438 * 17 15 14 19 19 C 1.50697 * 120.00051 * 180.02562 * 18 17 15 20 20 C 1.53000 * 117.49504 * 171.38345 * 19 18 17 21 21 C 1.52997 * 60.00347 * 107.48912 * 20 19 18 22 22 C 1.48260 * 104.39828 * 39.52337 * 14 13 11 23 23 C 1.53783 * 110.37578 * 178.18694 * 11 10 9 24 24 C 1.52589 * 110.28368 * 0.02562 * 23 11 10 25 25 C 1.53198 * 109.19867 * 182.30082 * 24 23 11 26 26 O 1.42903 * 109.34807 * 56.66674 * 25 24 23 27 27 C 1.42916 * 114.22147 * 298.39425 * 26 25 24 28 28 C 1.52595 * 110.26746 * 237.86233 * 23 11 10 29 29 H 0.96999 * 120.00197 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99680 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47350 * 60.00086 * 10 9 7 32 32 H 1.09000 * 109.47138 * 299.99880 * 10 9 7 33 33 H 1.09000 * 110.39921 * 98.60543 * 13 11 10 34 34 H 1.09004 * 110.50089 * 336.23431 * 13 11 10 35 35 H 1.08006 * 119.99933 * 0.02562 * 17 15 14 36 36 H 1.08006 * 119.99601 * 0.02562 * 18 17 15 37 37 H 1.08990 * 115.56356 * 25.69516 * 19 18 17 38 38 H 1.09002 * 117.49696 * 214.98125 * 20 19 18 39 39 H 1.09002 * 117.50343 * 0.02562 * 20 19 18 40 40 H 1.08999 * 117.49685 * 252.51237 * 21 20 19 41 41 H 1.08997 * 117.50044 * 107.48590 * 21 20 19 42 42 H 1.08998 * 110.43130 * 79.37713 * 22 14 13 43 43 H 1.08996 * 110.42741 * 201.86889 * 22 14 13 44 44 H 1.08998 * 109.51579 * 302.21461 * 24 23 11 45 45 H 1.08999 * 109.51369 * 62.38101 * 24 23 11 46 46 H 1.09000 * 109.49027 * 296.70606 * 25 24 23 47 47 H 1.08998 * 109.49707 * 176.63363 * 25 24 23 48 48 H 1.09005 * 109.49655 * 301.65814 * 27 26 25 49 49 H 1.09000 * 109.49925 * 181.57298 * 27 26 25 50 50 H 1.09003 * 109.51407 * 297.63983 * 28 23 11 51 51 H 1.08992 * 109.51706 * 57.80625 * 28 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1912 0.0011 12 1 5.8839 -1.5572 0.8464 13 6 6.0397 -1.5240 -1.3268 14 7 7.3670 -2.1078 -1.6328 15 6 8.4452 -1.4837 -2.1467 16 8 9.4718 -2.1056 -2.3427 17 6 8.3805 -0.0503 -2.4707 18 6 9.4447 0.5658 -2.9774 19 6 9.3785 2.0344 -3.3088 20 6 10.6846 2.7307 -3.6962 21 6 9.6260 2.4425 -4.7625 22 6 7.2387 -3.5349 -1.2519 23 6 6.4062 -3.5099 0.0467 24 6 5.4498 -4.6985 0.0775 25 6 6.2600 -5.9946 0.1806 26 8 7.0964 -5.9392 1.3380 27 6 8.0553 -4.8797 1.3183 28 6 7.3240 -3.5345 1.2655 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3620 0.0007 31 1 3.8492 -3.0422 -0.8891 32 1 3.8485 -3.0425 0.8908 33 1 6.1193 -0.4442 -1.2011 34 1 5.3283 -1.7623 -2.1176 35 1 7.4690 0.5022 -2.2963 36 1 10.3564 0.0134 -3.1514 37 1 8.6494 2.6122 -2.7410 38 1 10.8147 3.7666 -3.3832 39 1 11.5917 2.1264 -3.7119 40 1 9.8366 1.6486 -5.4791 41 1 9.0595 3.2888 -5.1510 42 1 6.7166 -4.0910 -2.0305 43 1 8.2211 -3.9690 -1.0667 44 1 4.7894 -4.6122 0.9404 45 1 4.8561 -4.7118 -0.8365 46 1 6.8782 -6.1088 -0.7098 47 1 5.5805 -6.8428 0.2632 48 1 8.6925 -4.9820 0.4397 49 1 8.6672 -4.9259 2.2191 50 1 8.0520 -2.7268 1.1894 51 1 6.7306 -3.4069 2.1708 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186320503.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:24 Heat of formation + Delta-G solvation = -40.327467 kcal Electronic energy + Delta-G solvation = -29853.848367 eV Core-core repulsion = 25946.904908 eV Total energy + Delta-G solvation = -3906.943459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.05900 -40.24923 -38.65087 -38.32019 -36.51869 -34.67284 -33.67638 -33.33574 -32.18599 -31.14922 -28.49550 -27.24619 -25.90625 -24.87558 -24.56437 -23.49687 -23.26330 -22.05056 -21.24893 -20.04512 -19.92455 -19.17912 -18.41226 -17.17399 -17.12593 -16.97627 -16.81986 -16.43388 -16.26923 -15.92511 -15.76194 -15.42927 -15.34845 -14.98961 -14.78450 -14.68116 -14.01900 -13.90149 -13.80170 -13.53524 -13.23346 -13.16217 -13.03901 -12.81700 -12.60721 -12.53950 -12.42541 -12.39768 -12.18871 -12.14411 -12.01007 -11.88558 -11.77021 -11.44500 -11.27306 -11.13254 -10.99663 -10.86881 -10.38735 -10.21810 -9.76580 -9.25615 -7.99534 -5.33114 0.24287 1.38922 1.43184 1.50495 1.85485 2.14694 2.51056 2.97372 2.98395 3.18840 3.31783 3.33784 3.49994 3.55742 3.83391 3.90145 3.92190 4.01851 4.04201 4.06077 4.10802 4.13286 4.16320 4.20336 4.32991 4.39591 4.43034 4.56446 4.60190 4.63829 4.71026 4.76151 4.79102 4.80338 4.84956 4.95712 4.97039 5.00376 5.07292 5.08179 5.12726 5.15313 5.22102 5.32851 5.39152 5.41079 5.43255 5.79882 6.23746 6.27851 6.43172 7.02685 7.11314 7.86524 8.05468 9.22075 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.006298 B = 0.004783 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4445.078540 B = 5852.218753 C = 9782.108706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.063 4.063 3 Si 0.950 3.050 4 H -0.274 1.274 5 H -0.301 1.301 6 H -0.248 1.248 7 C -0.231 4.231 8 H 0.057 0.943 9 N -0.757 5.757 10 C 0.168 3.832 11 C -0.093 4.093 12 H 0.084 0.916 13 C 0.108 3.892 14 N -0.614 5.614 15 C 0.564 3.436 16 O -0.589 6.589 17 C -0.228 4.228 18 C -0.018 4.018 19 C -0.157 4.157 20 C -0.162 4.162 21 C -0.162 4.162 22 C 0.112 3.888 23 C -0.055 4.055 24 C -0.144 4.144 25 C 0.059 3.941 26 O -0.398 6.398 27 C 0.060 3.940 28 C -0.135 4.135 29 H 0.257 0.743 30 H 0.365 0.635 31 H 0.036 0.964 32 H 0.032 0.968 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.139 0.861 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.113 0.887 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.059 0.941 47 H 0.107 0.893 48 H 0.053 0.947 49 H 0.105 0.895 50 H 0.071 0.929 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.601 -1.718 -4.698 23.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.255 4.255 3 Si 0.777 3.223 4 H -0.200 1.200 5 H -0.228 1.228 6 H -0.173 1.173 7 C -0.362 4.362 8 H 0.075 0.925 9 N -0.403 5.403 10 C 0.042 3.958 11 C -0.113 4.113 12 H 0.103 0.897 13 C -0.014 4.014 14 N -0.345 5.345 15 C 0.358 3.642 16 O -0.472 6.472 17 C -0.248 4.248 18 C -0.038 4.038 19 C -0.175 4.175 20 C -0.199 4.199 21 C -0.199 4.199 22 C -0.010 4.010 23 C -0.056 4.056 24 C -0.182 4.182 25 C -0.018 4.018 26 O -0.317 6.317 27 C -0.016 4.016 28 C -0.172 4.172 29 H 0.066 0.934 30 H 0.199 0.801 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.157 0.843 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.132 0.868 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.131 0.869 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.077 0.923 47 H 0.125 0.875 48 H 0.072 0.928 49 H 0.123 0.877 50 H 0.090 0.910 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 23.004 -2.243 -4.690 23.584 hybrid contribution -0.409 1.205 -0.067 1.274 sum 22.595 -1.038 -4.757 23.114 Atomic orbital electron populations 1.69889 1.07261 1.26611 1.59867 1.25489 0.96016 1.01225 1.02730 0.85480 0.78816 0.79695 0.78286 1.20010 1.22786 1.17280 1.19013 0.82717 0.93419 1.41014 0.92477 1.42723 1.02427 1.04154 1.90970 1.20926 0.88585 0.87329 0.98916 1.22211 0.94598 0.96640 0.97815 0.89743 1.22591 0.82795 0.99242 0.96822 1.48907 1.12216 1.11326 1.62050 1.18525 0.81225 0.88305 0.76182 1.90741 1.31198 1.68717 1.56573 1.22504 1.01680 0.92653 1.07983 1.23164 0.96949 0.94373 0.89306 1.21388 1.03096 0.92156 1.00856 1.23122 0.92323 1.02209 1.02258 1.23074 1.02835 1.03681 0.90297 1.22619 1.00612 0.82112 0.95657 1.21057 0.95056 0.94710 0.94808 1.22286 0.97991 0.93835 1.04081 1.22763 0.93071 0.97756 0.88188 1.87900 1.49570 1.51393 1.42886 1.22706 0.90456 0.85602 1.02839 1.22097 0.98937 0.98666 0.97537 0.93448 0.80135 0.94618 0.95030 0.89376 0.90282 0.84281 0.86349 0.86030 0.86816 0.88085 0.88503 0.86910 0.90025 0.90127 0.90711 0.89514 0.92274 0.87523 0.92838 0.87656 0.91032 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -61.89 13.97 21.65 0.30 -61.59 16 2 C -0.06 -3.60 5.50 84.86 0.47 -3.14 16 3 Si 0.95 43.22 27.74 68.60 1.90 45.12 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.25 -9.97 6.52 99.48 0.65 -9.33 16 7 C -0.23 -12.55 10.47 84.03 0.88 -11.67 16 8 H 0.06 3.43 8.06 -2.91 -0.02 3.41 16 9 N -0.76 -32.39 5.24 -343.46 -1.80 -34.19 16 10 C 0.17 5.62 4.39 86.38 0.38 6.00 16 11 C -0.09 -2.41 2.77 -10.01 -0.03 -2.44 16 12 H 0.08 2.24 7.71 -2.39 -0.02 2.22 16 13 C 0.11 2.69 6.09 86.57 0.53 3.22 16 14 N -0.61 -15.42 3.32 -811.78 -2.69 -18.11 16 15 C 0.56 15.62 7.86 86.57 0.68 16.30 16 16 O -0.59 -19.75 16.49 -4.10 -0.07 -19.82 16 17 C -0.23 -5.13 9.19 23.43 0.22 -4.91 16 18 C -0.02 -0.36 9.24 24.52 0.23 -0.13 16 19 C -0.16 -2.37 6.01 -11.54 -0.07 -2.44 16 20 C -0.16 -1.90 10.23 30.59 0.31 -1.59 16 21 C -0.16 -2.03 10.23 30.60 0.31 -1.72 16 22 C 0.11 2.55 5.12 86.47 0.44 2.99 16 23 C -0.05 -1.21 0.69 -51.76 -0.04 -1.25 16 24 C -0.14 -3.07 3.63 30.52 0.11 -2.96 16 25 C 0.06 1.12 6.65 72.05 0.48 1.59 16 26 O -0.40 -8.98 10.75 -148.98 -1.60 -10.59 16 27 C 0.06 1.18 6.64 72.05 0.48 1.66 16 28 C -0.13 -2.82 4.69 30.53 0.14 -2.68 16 29 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 30 H 0.37 14.75 5.38 -92.71 -0.50 14.25 16 31 H 0.04 1.20 6.88 -2.39 -0.02 1.18 16 32 H 0.03 1.11 6.62 -2.39 -0.02 1.09 16 33 H 0.09 2.05 6.71 -2.39 -0.02 2.04 16 34 H 0.08 2.08 7.81 -2.39 -0.02 2.06 16 35 H 0.14 2.76 6.73 -2.91 -0.02 2.74 16 36 H 0.12 2.54 7.49 -2.91 -0.02 2.52 16 37 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 1.73 7.78 -2.39 -0.02 1.72 16 43 H 0.08 1.91 5.94 -2.39 -0.01 1.89 16 44 H 0.07 1.81 6.60 -2.39 -0.02 1.79 16 45 H 0.09 1.80 6.87 -2.39 -0.02 1.78 16 46 H 0.06 1.00 7.54 -2.39 -0.02 0.98 16 47 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.05 1.02 6.53 -2.38 -0.02 1.00 16 49 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -70.21 393.87 1.94 -68.27 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: 0.37 Total: 34.06 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 5.52 Total: -3.16 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -4.19 Total: -113.89 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -1.67 Total: -30.40 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.90 Total: 45.12 kcal Total: -70.21 1.94 -68.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186320503.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.947 kcal (2) G-P(sol) polarization free energy of solvation -70.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds