Wall clock time and date at job start Tue Mar 31 2020 19:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47045 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00180 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00423 * 3 2 1 7 7 C 1.38811 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99701 * 179.73016 * 7 2 1 9 9 N 1.36935 * 120.00369 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99926 * 179.73019 * 9 7 2 11 11 C 1.53003 * 109.46708 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.34085 * 52.73868 * 11 10 9 13 13 C 1.54520 * 110.37376 * 290.35101 * 11 10 9 14 14 N 1.48196 * 104.63590 * 217.39536 * 13 11 10 15 15 C 1.34770 * 127.80048 * 219.24706 * 14 13 11 16 16 O 1.21285 * 120.00201 * 180.02562 * 15 14 13 17 17 C 1.50702 * 120.00113 * 0.04225 * 15 14 13 18 18 H 1.08998 * 115.54970 * 325.72630 * 17 15 14 19 19 C 1.53011 * 117.49737 * 111.39276 * 17 15 14 20 20 C 1.52992 * 117.49836 * 180.02562 * 17 15 14 21 21 C 1.52994 * 138.58880 * 121.62045 * 20 17 15 22 22 C 1.52992 * 59.99991 * 229.10467 * 21 20 17 23 23 C 1.48266 * 104.39611 * 39.28255 * 14 13 11 24 24 C 1.53781 * 110.37447 * 174.99903 * 11 10 9 25 25 C 1.52589 * 110.28553 * 0.02562 * 24 11 10 26 26 C 1.53203 * 109.19980 * 182.29743 * 25 24 11 27 27 O 1.42910 * 109.34381 * 56.66733 * 26 25 24 28 28 C 1.42914 * 114.22001 * 298.39276 * 27 26 25 29 29 C 1.52588 * 110.26880 * 237.85654 * 24 11 10 30 30 H 0.97004 * 120.00382 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99813 * 359.72895 * 9 7 2 32 32 H 1.08998 * 109.47134 * 299.99639 * 10 9 7 33 33 H 1.08994 * 109.47397 * 59.99931 * 10 9 7 34 34 H 1.08996 * 110.40557 * 336.18880 * 13 11 10 35 35 H 1.09001 * 110.40008 * 98.61218 * 13 11 10 36 36 H 1.09003 * 117.49435 * 214.97819 * 19 17 15 37 37 H 1.08997 * 117.49356 * 0.02562 * 19 17 15 38 38 H 1.08999 * 117.49752 * 336.59982 * 21 20 17 39 39 H 1.09009 * 117.49930 * 121.61784 * 21 20 17 40 40 H 1.09006 * 117.50287 * 252.50909 * 22 21 20 41 41 H 1.09002 * 117.50360 * 107.48812 * 22 21 20 42 42 H 1.08995 * 110.42283 * 202.10777 * 23 14 13 43 43 H 1.08998 * 110.42597 * 79.62354 * 23 14 13 44 44 H 1.08994 * 109.51552 * 302.21806 * 25 24 11 45 45 H 1.09005 * 109.51236 * 62.38111 * 25 24 11 46 46 H 1.09000 * 109.49120 * 296.70629 * 26 25 24 47 47 H 1.08995 * 109.49013 * 176.63018 * 26 25 24 48 48 H 1.08999 * 109.49423 * 301.65982 * 28 27 26 49 49 H 1.09000 * 109.49082 * 181.56968 * 28 27 26 50 50 H 1.08996 * 109.51887 * 297.64509 * 29 24 11 51 51 H 1.09009 * 109.51435 * 57.80823 * 29 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0049 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0071 11 6 1.0638 -4.8197 -0.0063 12 1 0.3439 -4.7032 -0.8164 13 6 0.3368 -4.9050 1.3546 14 7 0.1918 -6.3573 1.6112 15 6 -0.8633 -6.9995 2.1504 16 8 -0.8302 -8.2029 2.2977 17 6 -2.0845 -6.2225 2.5699 18 1 -1.8942 -5.2230 2.9610 19 6 -3.3674 -6.4330 1.7631 20 6 -3.2485 -7.0089 3.1758 21 6 -4.0586 -7.0423 4.4732 22 6 -3.4836 -8.3376 3.8969 23 6 1.4699 -6.9441 1.1417 24 6 1.8068 -6.1595 -0.1387 25 6 3.3115 -5.9231 -0.2302 26 6 4.0221 -7.2672 -0.4189 27 8 3.5021 -7.9188 -1.5797 28 6 2.1073 -8.2212 -1.5069 29 6 1.3124 -6.9190 -1.3663 30 1 -0.4851 0.8400 0.0004 31 1 0.3555 -2.3881 0.0038 32 1 2.6807 -3.7122 -0.9000 33 1 2.6887 -3.7168 0.8799 34 1 0.9371 -4.4390 2.1360 35 1 -0.6425 -4.4304 1.2926 36 1 -4.0214 -5.5721 1.6240 37 1 -3.3282 -7.1339 0.9293 38 1 -3.5892 -6.6384 5.3702 39 1 -5.1358 -6.8926 4.3980 40 1 -4.1823 -9.0402 3.4425 41 1 -2.6357 -8.7861 4.4147 42 1 1.3424 -8.0029 0.9167 43 1 2.2501 -6.8045 1.8899 44 1 3.5273 -5.2748 -1.0794 45 1 3.6625 -5.4514 0.6876 46 1 3.8529 -7.8941 0.4565 47 1 5.0916 -7.0987 -0.5448 48 1 1.9178 -8.8580 -0.6428 49 1 1.7995 -8.7389 -2.4154 50 1 0.2535 -7.1494 -1.2500 51 1 1.4570 -6.3063 -2.2563 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186506201.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:36 Heat of formation + Delta-G solvation = -3.164253 kcal Electronic energy + Delta-G solvation = -30266.833345 eV Core-core repulsion = 26361.501404 eV Total energy + Delta-G solvation = -3905.331941 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.98401 -39.52995 -37.79239 -36.98574 -34.66075 -33.48736 -32.60875 -31.73370 -31.14812 -29.24783 -27.42216 -25.62508 -24.63197 -23.80035 -23.27370 -22.51567 -22.27839 -20.73175 -19.96257 -18.59644 -18.43429 -17.43213 -16.88415 -16.09151 -16.00564 -15.86952 -15.55109 -15.13438 -15.00353 -14.84794 -14.63226 -14.45606 -13.97136 -13.94181 -13.35515 -13.19404 -12.78120 -12.69868 -12.40455 -12.27055 -12.08536 -11.84247 -11.79229 -11.59996 -11.53938 -11.28501 -11.10620 -11.01319 -10.85889 -10.68584 -10.33635 -10.25769 -10.19393 -10.14024 -10.07157 -9.97259 -9.75795 -9.68587 -9.39677 -8.92146 -8.65611 -6.98084 -5.82500 -3.11253 2.48612 2.85025 3.39614 3.45842 3.47630 3.60576 3.66366 3.84024 4.15276 4.35671 4.48102 4.57887 4.61840 4.66643 4.69286 4.96274 4.98156 5.06092 5.09199 5.19650 5.29458 5.32663 5.36096 5.42777 5.48410 5.49406 5.51829 5.52832 5.54119 5.61164 5.63260 5.66737 5.72922 5.78592 5.82602 5.83918 5.93206 5.96761 6.02505 6.03667 6.08865 6.14502 6.25944 6.31626 6.41025 6.68916 6.76616 7.15356 7.59484 7.65551 8.20394 8.36170 9.47904 10.04162 10.38556 11.40311 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.007937 B = 0.004091 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3526.783030 B = 6841.951971 C = 9827.233702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.162 3.838 11 C -0.096 4.096 12 H 0.085 0.915 13 C 0.109 3.891 14 N -0.618 5.618 15 C 0.564 3.436 16 O -0.545 6.545 17 C -0.137 4.137 18 H 0.126 0.874 19 C -0.098 4.098 20 C -0.201 4.201 21 C -0.130 4.130 22 C -0.114 4.114 23 C 0.113 3.887 24 C -0.064 4.064 25 C -0.145 4.145 26 C 0.058 3.942 27 O -0.383 6.383 28 C 0.060 3.940 29 C -0.138 4.138 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.028 0.972 33 H 0.023 0.977 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.047 0.953 47 H 0.093 0.907 48 H 0.050 0.950 49 H 0.092 0.908 50 H 0.072 0.928 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.257 -16.975 3.476 17.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.034 3.966 11 C -0.116 4.116 12 H 0.103 0.897 13 C -0.013 4.013 14 N -0.351 5.351 15 C 0.353 3.647 16 O -0.422 6.422 17 C -0.158 4.158 18 H 0.144 0.856 19 C -0.135 4.135 20 C -0.201 4.201 21 C -0.167 4.167 22 C -0.151 4.151 23 C -0.009 4.009 24 C -0.066 4.066 25 C -0.183 4.183 26 C -0.018 4.018 27 O -0.302 6.302 28 C -0.017 4.017 29 C -0.176 4.176 30 H 0.064 0.936 31 H 0.216 0.784 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.065 0.935 47 H 0.112 0.888 48 H 0.068 0.932 49 H 0.110 0.890 50 H 0.090 0.910 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.075 -17.598 3.454 18.053 hybrid contribution 0.020 1.362 0.228 1.381 sum -2.055 -16.236 3.682 16.775 Atomic orbital electron populations 1.69657 1.05100 1.25579 1.57787 1.24719 0.95498 0.97659 1.02923 0.86146 0.78836 0.84180 0.77204 1.20549 1.21867 1.21871 1.19245 0.91049 0.84088 1.42662 0.91145 1.42394 1.05823 0.99990 1.89527 1.20851 0.92838 0.84621 0.98270 1.22295 0.98148 0.94005 0.97137 0.89713 1.22604 1.01811 0.79625 0.97288 1.48990 1.15358 1.09622 1.61170 1.19271 0.82129 0.86808 0.76469 1.90667 1.81524 1.14318 1.55734 1.21935 0.88210 1.00252 1.05395 0.85621 1.22665 0.96281 1.02146 0.92380 1.21160 1.00923 1.03072 0.94984 1.22757 0.98776 1.00971 0.94166 1.22575 1.02138 0.89539 1.00844 1.22460 0.85275 0.98422 0.94781 1.21069 0.95726 0.95355 0.94408 1.22314 0.93589 0.98094 1.04293 1.22681 0.98379 0.92649 0.88119 1.87907 1.23450 1.78696 1.40156 1.22647 0.81388 0.95784 1.01874 1.22143 1.00052 0.97241 0.98181 0.93552 0.78374 0.95428 0.95937 0.90257 0.89835 0.87337 0.88196 0.88555 0.88333 0.88660 0.88362 0.90126 0.91115 0.89455 0.89945 0.93453 0.88839 0.93213 0.89026 0.90961 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.12 13.06 55.49 0.72 -26.39 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.38 9.99 -15.06 -0.15 -6.53 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.73 -17.18 5.48 -59.91 -0.33 -17.51 16 10 C 0.16 2.91 4.41 -4.04 -0.02 2.89 16 11 C -0.10 -1.41 2.74 -89.41 -0.25 -1.65 16 12 H 0.08 1.32 7.70 -51.93 -0.40 0.92 16 13 C 0.11 1.55 6.20 -2.31 -0.01 1.54 16 14 N -0.62 -8.53 3.32 -169.39 -0.56 -9.10 16 15 C 0.56 8.37 7.70 -10.99 -0.08 8.28 16 16 O -0.54 -9.47 16.52 5.55 0.09 -9.38 16 17 C -0.14 -1.75 5.30 -91.77 -0.49 -2.23 16 18 H 0.13 1.53 7.65 -51.93 -0.40 1.13 16 19 C -0.10 -1.09 10.24 -26.71 -0.27 -1.36 16 20 C -0.20 -2.36 5.05 -154.51 -0.78 -3.14 16 21 C -0.13 -1.24 10.53 -26.74 -0.28 -1.52 16 22 C -0.11 -1.23 10.16 -26.74 -0.27 -1.51 16 23 C 0.11 1.43 5.11 -2.60 -0.01 1.42 16 24 C -0.06 -0.79 0.69 -154.05 -0.11 -0.90 16 25 C -0.15 -1.70 3.62 -26.84 -0.10 -1.80 16 26 C 0.06 0.62 6.65 37.26 0.25 0.87 16 27 O -0.38 -4.76 10.75 -35.23 -0.38 -5.14 16 28 C 0.06 0.66 6.64 37.26 0.25 0.91 16 29 C -0.14 -1.63 4.67 -26.84 -0.13 -1.76 16 30 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.38 9.42 7.62 -40.82 -0.31 9.11 16 32 H 0.03 0.51 6.42 -51.93 -0.33 0.18 16 33 H 0.02 0.41 6.98 -51.93 -0.36 0.05 16 34 H 0.08 1.19 7.75 -51.93 -0.40 0.79 16 35 H 0.08 1.20 7.22 -51.93 -0.37 0.82 16 36 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.10 0.79 8.14 -51.92 -0.42 0.36 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.08 1.05 5.92 -51.93 -0.31 0.75 16 43 H 0.07 0.85 7.77 -51.93 -0.40 0.45 16 44 H 0.09 1.13 6.52 -51.93 -0.34 0.79 16 45 H 0.08 0.94 6.97 -51.93 -0.36 0.58 16 46 H 0.05 0.47 7.54 -51.93 -0.39 0.07 16 47 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.05 0.54 6.52 -51.93 -0.34 0.20 16 49 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 50 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 51 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 LS Contribution 395.33 15.07 5.96 5.96 Total: -1.00 -31.27 395.33 -10.56 -41.84 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -8.50 Total: 9.88 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -2.55 Total: -6.91 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.17 Total: -52.99 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.29 Total: -14.52 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.27 -10.56 -41.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186506201.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.671 kcal (2) G-P(sol) polarization free energy of solvation -31.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds