Wall clock time and date at job start Tue Mar 31 2020 19:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47045 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00180 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00423 * 3 2 1 7 7 C 1.38811 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99701 * 179.73016 * 7 2 1 9 9 N 1.36935 * 120.00369 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99926 * 179.73019 * 9 7 2 11 11 C 1.53003 * 109.46708 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.34085 * 52.73868 * 11 10 9 13 13 C 1.54520 * 110.37376 * 290.35101 * 11 10 9 14 14 N 1.48196 * 104.63590 * 217.39536 * 13 11 10 15 15 C 1.34770 * 127.80048 * 219.24706 * 14 13 11 16 16 O 1.21285 * 120.00201 * 180.02562 * 15 14 13 17 17 C 1.50702 * 120.00113 * 0.04225 * 15 14 13 18 18 H 1.08998 * 115.54970 * 325.72630 * 17 15 14 19 19 C 1.53011 * 117.49737 * 111.39276 * 17 15 14 20 20 C 1.52992 * 117.49836 * 180.02562 * 17 15 14 21 21 C 1.52994 * 138.58880 * 121.62045 * 20 17 15 22 22 C 1.52992 * 59.99991 * 229.10467 * 21 20 17 23 23 C 1.48266 * 104.39611 * 39.28255 * 14 13 11 24 24 C 1.53781 * 110.37447 * 174.99903 * 11 10 9 25 25 C 1.52589 * 110.28553 * 0.02562 * 24 11 10 26 26 C 1.53203 * 109.19980 * 182.29743 * 25 24 11 27 27 O 1.42910 * 109.34381 * 56.66733 * 26 25 24 28 28 C 1.42914 * 114.22001 * 298.39276 * 27 26 25 29 29 C 1.52588 * 110.26880 * 237.85654 * 24 11 10 30 30 H 0.97004 * 120.00382 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99813 * 359.72895 * 9 7 2 32 32 H 1.08998 * 109.47134 * 299.99639 * 10 9 7 33 33 H 1.08994 * 109.47397 * 59.99931 * 10 9 7 34 34 H 1.08996 * 110.40557 * 336.18880 * 13 11 10 35 35 H 1.09001 * 110.40008 * 98.61218 * 13 11 10 36 36 H 1.09003 * 117.49435 * 214.97819 * 19 17 15 37 37 H 1.08997 * 117.49356 * 0.02562 * 19 17 15 38 38 H 1.08999 * 117.49752 * 336.59982 * 21 20 17 39 39 H 1.09009 * 117.49930 * 121.61784 * 21 20 17 40 40 H 1.09006 * 117.50287 * 252.50909 * 22 21 20 41 41 H 1.09002 * 117.50360 * 107.48812 * 22 21 20 42 42 H 1.08995 * 110.42283 * 202.10777 * 23 14 13 43 43 H 1.08998 * 110.42597 * 79.62354 * 23 14 13 44 44 H 1.08994 * 109.51552 * 302.21806 * 25 24 11 45 45 H 1.09005 * 109.51236 * 62.38111 * 25 24 11 46 46 H 1.09000 * 109.49120 * 296.70629 * 26 25 24 47 47 H 1.08995 * 109.49013 * 176.63018 * 26 25 24 48 48 H 1.08999 * 109.49423 * 301.65982 * 28 27 26 49 49 H 1.09000 * 109.49082 * 181.56968 * 28 27 26 50 50 H 1.08996 * 109.51887 * 297.64509 * 29 24 11 51 51 H 1.09009 * 109.51435 * 57.80823 * 29 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0049 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0071 11 6 1.0638 -4.8197 -0.0063 12 1 0.3439 -4.7032 -0.8164 13 6 0.3368 -4.9050 1.3546 14 7 0.1918 -6.3573 1.6112 15 6 -0.8633 -6.9995 2.1504 16 8 -0.8302 -8.2029 2.2977 17 6 -2.0845 -6.2225 2.5699 18 1 -1.8942 -5.2230 2.9610 19 6 -3.3674 -6.4330 1.7631 20 6 -3.2485 -7.0089 3.1758 21 6 -4.0586 -7.0423 4.4732 22 6 -3.4836 -8.3376 3.8969 23 6 1.4699 -6.9441 1.1417 24 6 1.8068 -6.1595 -0.1387 25 6 3.3115 -5.9231 -0.2302 26 6 4.0221 -7.2672 -0.4189 27 8 3.5021 -7.9188 -1.5797 28 6 2.1073 -8.2212 -1.5069 29 6 1.3124 -6.9190 -1.3663 30 1 -0.4851 0.8400 0.0004 31 1 0.3555 -2.3881 0.0038 32 1 2.6807 -3.7122 -0.9000 33 1 2.6887 -3.7168 0.8799 34 1 0.9371 -4.4390 2.1360 35 1 -0.6425 -4.4304 1.2926 36 1 -4.0214 -5.5721 1.6240 37 1 -3.3282 -7.1339 0.9293 38 1 -3.5892 -6.6384 5.3702 39 1 -5.1358 -6.8926 4.3980 40 1 -4.1823 -9.0402 3.4425 41 1 -2.6357 -8.7861 4.4147 42 1 1.3424 -8.0029 0.9167 43 1 2.2501 -6.8045 1.8899 44 1 3.5273 -5.2748 -1.0794 45 1 3.6625 -5.4514 0.6876 46 1 3.8529 -7.8941 0.4565 47 1 5.0916 -7.0987 -0.5448 48 1 1.9178 -8.8580 -0.6428 49 1 1.7995 -8.7389 -2.4154 50 1 0.2535 -7.1494 -1.2500 51 1 1.4570 -6.3063 -2.2563 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186506201.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:35 Heat of formation + Delta-G solvation = -21.193203 kcal Electronic energy + Delta-G solvation = -30267.615139 eV Core-core repulsion = 26361.501404 eV Total energy + Delta-G solvation = -3906.113735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.07618 -40.56455 -38.76472 -38.08740 -36.36065 -34.66168 -33.57283 -33.31557 -32.14901 -30.79407 -28.48333 -27.08083 -25.89852 -24.98722 -24.36155 -23.62865 -23.30036 -21.93613 -20.95462 -19.75930 -19.50504 -18.99021 -18.27448 -17.18528 -17.00068 -16.93173 -16.65640 -16.43368 -15.98737 -15.88087 -15.86499 -15.54745 -15.20713 -15.17293 -15.05147 -14.65757 -13.87901 -13.86808 -13.64784 -13.35535 -13.20464 -13.02010 -12.95185 -12.80173 -12.70048 -12.54091 -12.37713 -12.30237 -12.20748 -12.07975 -11.88678 -11.66615 -11.27058 -11.22338 -11.17193 -11.10093 -10.96539 -10.83196 -10.77956 -10.37877 -9.82173 -8.94057 -7.91921 -5.19308 1.37003 1.49616 1.50793 1.59702 1.76938 2.58274 2.69412 2.76648 2.97549 3.25219 3.31014 3.40330 3.45436 3.54670 3.67628 3.79829 3.98028 4.04739 4.06057 4.09076 4.17453 4.18720 4.27302 4.39282 4.41248 4.46089 4.54616 4.58349 4.62278 4.67758 4.71602 4.73231 4.75137 4.76958 4.79668 4.82934 4.88123 4.97610 4.98060 4.99526 5.04583 5.11654 5.15572 5.20508 5.25410 5.40530 5.42795 5.55143 6.27481 6.30799 6.43780 7.04821 7.38213 8.13354 8.36366 9.31574 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.007937 B = 0.004091 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3526.783030 B = 6841.951971 C = 9827.233702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.296 1.296 6 H -0.295 1.295 7 C -0.239 4.239 8 H 0.075 0.925 9 N -0.744 5.744 10 C 0.166 3.834 11 C -0.087 4.087 12 H 0.075 0.925 13 C 0.117 3.883 14 N -0.616 5.616 15 C 0.561 3.439 16 O -0.574 6.574 17 C -0.153 4.153 18 H 0.129 0.871 19 C -0.088 4.088 20 C -0.221 4.221 21 C -0.110 4.110 22 C -0.122 4.122 23 C 0.113 3.887 24 C -0.055 4.055 25 C -0.142 4.142 26 C 0.059 3.941 27 O -0.398 6.398 28 C 0.062 3.938 29 C -0.135 4.135 30 H 0.250 0.750 31 H 0.374 0.626 32 H 0.029 0.971 33 H 0.030 0.970 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.125 0.875 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.059 0.941 47 H 0.109 0.891 48 H 0.054 0.946 49 H 0.105 0.895 50 H 0.069 0.931 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.817 -17.557 3.818 18.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.263 4.263 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.224 1.224 6 H -0.222 1.222 7 C -0.371 4.371 8 H 0.093 0.907 9 N -0.386 5.386 10 C 0.040 3.960 11 C -0.107 4.107 12 H 0.093 0.907 13 C -0.006 4.006 14 N -0.348 5.348 15 C 0.351 3.649 16 O -0.454 6.454 17 C -0.174 4.174 18 H 0.146 0.854 19 C -0.125 4.125 20 C -0.221 4.221 21 C -0.147 4.147 22 C -0.159 4.159 23 C -0.009 4.009 24 C -0.056 4.056 25 C -0.180 4.180 26 C -0.018 4.018 27 O -0.317 6.317 28 C -0.015 4.015 29 C -0.172 4.172 30 H 0.059 0.941 31 H 0.206 0.794 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.143 0.857 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.137 0.863 40 H 0.124 0.876 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.077 0.923 47 H 0.127 0.873 48 H 0.072 0.928 49 H 0.123 0.877 50 H 0.087 0.913 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.591 -18.203 3.791 18.662 hybrid contribution -0.077 1.469 0.124 1.477 sum -1.668 -16.734 3.916 17.267 Atomic orbital electron populations 1.69794 1.06419 1.25829 1.59702 1.25439 0.96277 1.00696 1.03915 0.85189 0.78375 0.80407 0.76507 1.19142 1.22383 1.22216 1.19616 0.91470 0.85280 1.40723 0.90690 1.42582 1.05661 1.01063 1.89339 1.20942 0.93205 0.83573 0.98279 1.22123 0.97446 0.94030 0.97058 0.90658 1.22450 1.01515 0.79873 0.96754 1.48996 1.15651 1.09345 1.60779 1.19652 0.82661 0.86607 0.75948 1.90645 1.82113 1.15529 1.57084 1.21940 0.87984 1.00366 1.07080 0.85364 1.22715 0.95200 1.02490 0.92080 1.21409 1.00494 1.04055 0.96167 1.22886 0.99672 0.99102 0.93028 1.22626 1.02190 0.89966 1.01076 1.22537 0.85044 0.98297 0.94994 1.20997 0.96080 0.93856 0.94708 1.22278 0.92983 0.98816 1.03940 1.22776 0.99000 0.91849 0.88143 1.87896 1.23971 1.78812 1.41021 1.22694 0.80766 0.95207 1.02813 1.22094 1.00054 0.97637 0.97448 0.94118 0.79354 0.95359 0.95232 0.90850 0.90092 0.85678 0.88594 0.87999 0.86263 0.87575 0.89713 0.90194 0.90132 0.90689 0.89487 0.92316 0.87326 0.92831 0.87653 0.91272 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.74 13.06 21.65 0.28 -56.46 16 2 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 3 Si 0.97 44.68 29.55 68.60 2.03 46.71 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 7 C -0.24 -12.63 9.99 84.03 0.84 -11.79 16 8 H 0.08 3.83 7.83 -2.91 -0.02 3.80 16 9 N -0.74 -34.81 5.48 -343.46 -1.88 -36.69 16 10 C 0.17 5.88 4.41 86.38 0.38 6.26 16 11 C -0.09 -2.50 2.74 -10.01 -0.03 -2.53 16 12 H 0.08 2.35 7.70 -2.39 -0.02 2.33 16 13 C 0.12 3.29 6.20 86.57 0.54 3.83 16 14 N -0.62 -16.70 3.32 -808.22 -2.68 -19.39 16 15 C 0.56 16.54 7.70 87.66 0.67 17.21 16 16 O -0.57 -19.92 16.52 -3.04 -0.05 -19.97 16 17 C -0.15 -3.84 5.30 -11.54 -0.06 -3.90 16 18 H 0.13 3.08 7.65 -2.39 -0.02 3.07 16 19 C -0.09 -1.88 10.24 30.61 0.31 -1.57 16 20 C -0.22 -4.97 5.05 -52.18 -0.26 -5.23 16 21 C -0.11 -1.89 10.53 30.59 0.32 -1.57 16 22 C -0.12 -2.52 10.16 30.59 0.31 -2.21 16 23 C 0.11 2.74 5.11 86.34 0.44 3.18 16 24 C -0.05 -1.30 0.69 -51.89 -0.04 -1.34 16 25 C -0.14 -3.13 3.62 30.53 0.11 -3.01 16 26 C 0.06 1.13 6.65 72.05 0.48 1.61 16 27 O -0.40 -9.18 10.75 -148.98 -1.60 -10.78 16 28 C 0.06 1.26 6.64 72.05 0.48 1.74 16 29 C -0.13 -3.05 4.67 30.53 0.14 -2.91 16 30 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 31 H 0.37 18.63 7.62 -92.70 -0.71 17.93 16 32 H 0.03 1.03 6.42 -2.39 -0.02 1.01 16 33 H 0.03 1.03 6.98 -2.39 -0.02 1.02 16 34 H 0.07 2.18 7.75 -2.39 -0.02 2.16 16 35 H 0.08 2.34 7.22 -2.39 -0.02 2.32 16 36 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 41 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.08 1.99 5.92 -2.39 -0.01 1.98 16 43 H 0.08 1.81 7.77 -2.39 -0.02 1.79 16 44 H 0.07 1.86 6.52 -2.39 -0.02 1.84 16 45 H 0.09 1.83 6.97 -2.38 -0.02 1.81 16 46 H 0.06 1.01 7.54 -2.39 -0.02 1.00 16 47 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.05 1.07 6.52 -2.39 -0.02 1.05 16 49 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 50 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 51 H 0.07 1.72 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -65.88 395.33 1.42 -64.46 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: 0.22 Total: 37.79 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 5.11 Total: -5.67 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -4.28 Total: -112.54 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -1.65 Total: -30.75 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -65.88 1.42 -64.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186506201.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.263 kcal (2) G-P(sol) polarization free energy of solvation -65.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds