Wall clock time and date at job start Tue Mar 31 2020 18:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36939 * 120.00238 * 2 1 4 4 H 1.07992 * 120.00485 * 203.30264 * 3 2 1 5 5 C 1.38815 * 119.99511 * 23.30548 * 3 2 1 6 6 N 1.31621 * 119.99952 * 13.98376 * 5 3 2 7 7 Si 1.86797 * 119.99858 * 193.98290 * 5 3 2 8 8 H 1.48506 * 109.47322 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.47371 * 120.00120 * 7 5 3 10 10 H 1.48499 * 109.47105 * 240.00115 * 7 5 3 11 11 C 1.46494 * 119.99888 * 180.02562 * 2 1 3 12 12 H 1.09004 * 110.88873 * 182.42499 * 11 2 1 13 13 C 1.55155 * 111.00816 * 58.54174 * 11 2 1 14 14 C 1.54324 * 102.94759 * 206.38599 * 13 11 2 15 15 N 1.47026 * 107.26666 * 22.19125 * 14 13 11 16 16 C 1.34774 * 125.64322 * 181.02431 * 15 14 13 17 17 O 1.21287 * 119.99634 * 180.02562 * 16 15 14 18 18 C 1.50699 * 120.00706 * 0.02562 * 16 15 14 19 19 C 1.52996 * 109.47506 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47056 * 179.97438 * 19 18 16 21 21 C 1.50703 * 109.47142 * 180.02562 * 20 19 18 22 22 C 1.38245 * 119.97386 * 269.72567 * 21 20 19 23 23 C 1.38193 * 120.02887 * 179.76226 * 22 21 20 24 24 C 1.38458 * 119.97041 * 0.51401 * 23 22 21 25 25 F 1.35105 * 120.02705 * 179.76305 * 24 23 22 26 26 C 1.38459 * 119.95326 * 359.74038 * 24 23 22 27 27 C 1.38200 * 119.96863 * 0.02562 * 26 24 23 28 28 C 1.47417 * 108.70348 * 1.28815 * 15 14 13 29 29 H 1.09005 * 109.46662 * 275.16381 * 1 2 3 30 30 H 1.08998 * 109.47178 * 35.16470 * 1 2 3 31 31 H 1.08998 * 109.47265 * 155.16879 * 1 2 3 32 32 H 0.97005 * 119.99761 * 180.02562 * 6 5 3 33 33 H 1.09000 * 110.72151 * 88.02229 * 13 11 2 34 34 H 1.08994 * 110.72115 * 324.75322 * 13 11 2 35 35 H 1.09003 * 109.88262 * 262.77905 * 14 13 11 36 36 H 1.08998 * 109.88401 * 141.61161 * 14 13 11 37 37 H 1.08999 * 109.46940 * 59.99780 * 18 16 15 38 38 H 1.08998 * 109.46934 * 300.00458 * 18 16 15 39 39 H 1.08998 * 109.47497 * 300.00235 * 19 18 16 40 40 H 1.09003 * 109.46963 * 60.00498 * 19 18 16 41 41 H 1.08996 * 109.47619 * 300.00115 * 20 19 18 42 42 H 1.08997 * 109.47414 * 60.00506 * 20 19 18 43 43 H 1.08006 * 119.98408 * 0.02562 * 22 21 20 44 44 H 1.08005 * 120.01709 * 180.24996 * 23 22 21 45 45 H 1.07995 * 120.01554 * 180.02562 * 26 24 23 46 46 H 1.08007 * 119.98682 * 179.97438 * 27 26 24 47 47 H 1.08999 * 110.36877 * 94.48389 * 28 15 14 48 48 H 1.09002 * 110.36849 * 216.80406 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1636 1.2241 -0.3700 5 6 1.5406 2.3390 0.4756 6 7 0.4273 2.2555 1.1729 7 14 2.3008 4.0091 0.1262 8 1 3.5404 3.8315 -0.6722 9 1 1.3366 4.8421 -0.6365 10 1 2.6296 4.6815 1.4088 11 6 2.1975 -1.2687 -0.0006 12 1 3.2730 -1.0966 0.0426 13 6 1.8209 -2.1278 -1.2365 14 6 2.0904 -3.5679 -0.7516 15 7 2.0434 -3.5496 0.7178 16 6 2.2486 -4.6104 1.5234 17 8 2.1844 -4.4789 2.7274 18 6 2.5578 -5.9600 0.9283 19 6 2.7458 -6.9817 2.0515 20 6 3.0590 -8.3520 1.4472 21 6 3.2436 -9.3586 2.5535 22 6 4.4993 -9.5716 3.0910 23 6 4.6690 -10.4908 4.1089 24 6 3.5825 -11.2062 4.5831 25 9 3.7480 -12.1086 5.5749 26 6 2.3262 -10.9958 4.0405 27 6 2.1582 -10.0726 3.0259 28 6 1.7284 -2.1803 1.1637 29 1 -0.3633 0.0925 1.0236 30 1 -0.3633 0.8401 -0.5918 31 1 -0.3634 -0.9326 -0.4316 32 1 0.0015 3.0613 1.5049 33 1 2.4579 -1.8814 -2.0860 34 1 0.7692 -1.9970 -1.4911 35 1 3.0750 -3.8938 -1.0870 36 1 1.3237 -4.2390 -1.1388 37 1 3.4724 -5.8962 0.3388 38 1 1.7333 -6.2719 0.2871 39 1 3.5704 -6.6697 2.6923 40 1 1.8313 -7.0457 2.6413 41 1 2.2341 -8.6639 0.8067 42 1 3.9732 -8.2885 0.8572 43 1 5.3474 -9.0164 2.7182 44 1 5.6495 -10.6542 4.5315 45 1 1.4780 -11.5530 4.4098 46 1 1.1783 -9.9086 2.6021 47 1 0.6560 -2.0713 1.3254 48 1 2.2764 -1.9427 2.0754 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192498959.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:32 Heat of formation + Delta-G solvation = -43.035945 kcal Electronic energy + Delta-G solvation = -27478.770470 eV Core-core repulsion = 23448.249258 eV Total energy + Delta-G solvation = -4030.521212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -49.18698 -39.90177 -39.47095 -37.53033 -35.00929 -34.79818 -31.83571 -31.48889 -31.10093 -29.75919 -28.21909 -26.72573 -26.07013 -23.86651 -23.41382 -22.52964 -22.20871 -21.14933 -19.33908 -18.88290 -17.99277 -17.08711 -16.88434 -16.79451 -16.07702 -15.95080 -15.86642 -15.36673 -14.93927 -14.52999 -14.34029 -14.03753 -13.85456 -13.62039 -13.49165 -13.30784 -13.16254 -12.75399 -12.55049 -12.42677 -12.31197 -12.06987 -11.86358 -11.70700 -11.50740 -11.37486 -11.37169 -10.94757 -10.87388 -10.81229 -10.53893 -10.49327 -10.28299 -9.91955 -9.85610 -9.58686 -9.46531 -8.85993 -8.62746 -8.31490 -6.83057 -5.79248 -3.27220 0.78682 0.87631 2.84976 3.15876 3.29101 3.34799 3.42232 3.44066 3.93545 4.33518 4.34951 4.43676 4.53788 4.59775 4.73855 4.90806 4.97305 4.99529 4.99800 5.17813 5.22225 5.31978 5.35410 5.42537 5.45123 5.49863 5.54311 5.62027 5.72991 5.77092 5.80769 5.87401 5.88986 5.89232 5.99230 6.14953 6.22305 6.28843 6.36960 6.52989 6.54763 6.61792 6.74673 6.85412 7.28890 7.66893 7.75406 7.82933 8.31818 8.40851 9.15483 9.78016 10.26877 11.25094 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.029156 B = 0.001687 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.110646 B =16596.831999 C =16851.697430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.584 5.584 3 C -0.262 4.262 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.903 5.903 7 Si 0.906 3.094 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.155 4.155 14 C 0.105 3.895 15 N -0.616 5.616 16 C 0.521 3.479 17 O -0.547 6.547 18 C -0.135 4.135 19 C -0.099 4.099 20 C -0.081 4.081 21 C -0.087 4.087 22 C -0.088 4.088 23 C -0.151 4.151 24 C 0.089 3.911 25 F -0.143 7.143 26 C -0.151 4.151 27 C -0.088 4.088 28 C 0.086 3.914 29 H 0.033 0.967 30 H 0.042 0.958 31 H 0.002 0.998 32 H 0.253 0.747 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.133 0.867 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.133 0.867 47 H 0.067 0.933 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.953 -25.862 -2.384 26.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.305 5.305 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.547 5.547 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.195 4.195 14 C -0.019 4.019 15 N -0.350 5.350 16 C 0.309 3.691 17 O -0.425 6.425 18 C -0.175 4.175 19 C -0.137 4.137 20 C -0.119 4.119 21 C -0.087 4.087 22 C -0.106 4.106 23 C -0.170 4.170 24 C 0.070 3.930 25 F -0.121 7.121 26 C -0.170 4.170 27 C -0.106 4.106 28 C -0.038 4.038 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.021 0.979 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.151 0.849 44 H 0.152 0.848 45 H 0.152 0.848 46 H 0.151 0.849 47 H 0.085 0.915 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.814 -25.701 -1.587 26.196 hybrid contribution 0.263 0.767 0.093 0.816 sum 5.077 -24.934 -1.493 25.489 Atomic orbital electron populations 1.20812 0.82493 0.95588 0.99700 1.43863 1.01866 0.99895 1.84846 1.19249 0.98813 0.85192 1.35849 0.91158 1.25071 0.97970 0.98720 0.97672 1.70084 1.20139 1.27367 1.37079 0.86163 0.78529 0.84111 0.77580 1.20236 1.21551 1.21670 1.21504 0.96345 0.85748 0.90187 0.90419 1.23220 1.02832 0.92883 1.00549 1.22016 1.00585 0.99082 0.80198 1.48598 1.69290 1.09908 1.07215 1.20312 0.76998 0.85268 0.86505 1.90706 1.52181 1.85085 1.14563 1.21651 1.03628 0.92538 0.99700 1.21329 1.03587 0.91650 0.97109 1.20662 1.02901 0.93054 0.95239 1.19986 0.93164 0.97375 0.98193 1.20960 0.97378 0.96857 0.95372 1.21157 0.98515 0.98212 0.99134 1.17746 0.94816 0.91328 0.89137 1.91498 1.96328 1.65222 1.59095 1.21156 0.96085 1.01006 0.98779 1.20958 0.99089 0.94782 0.95747 1.23120 1.00941 0.79451 1.00291 0.94857 0.93957 0.97910 0.93635 0.90602 0.90530 0.91885 0.92141 0.89063 0.89115 0.90905 0.90944 0.90594 0.90569 0.84903 0.84791 0.84796 0.84917 0.91497 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.74 7.60 59.85 0.45 4.20 16 2 N -0.58 -14.01 2.96 -170.90 -0.51 -14.51 16 3 C -0.26 -6.96 9.60 -15.06 -0.14 -7.10 16 4 H 0.07 1.82 7.86 -52.49 -0.41 1.41 16 5 C 0.00 0.13 5.08 -17.43 -0.09 0.04 16 6 N -0.90 -25.91 10.78 55.49 0.60 -25.31 16 7 Si 0.91 21.41 29.58 -169.99 -5.03 16.38 16 8 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 9 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 C 0.17 3.35 3.55 -65.67 -0.23 3.12 16 12 H 0.08 1.53 7.95 -51.93 -0.41 1.12 16 13 C -0.15 -2.32 6.49 -24.90 -0.16 -2.49 16 14 C 0.10 1.28 6.49 -3.06 -0.02 1.26 16 15 N -0.62 -9.57 3.32 -170.38 -0.57 -10.13 16 16 C 0.52 7.92 7.85 -10.99 -0.09 7.84 16 17 O -0.55 -10.65 16.24 5.55 0.09 -10.56 16 18 C -0.14 -1.31 4.89 -27.89 -0.14 -1.44 16 19 C -0.10 -0.93 4.49 -26.73 -0.12 -1.05 16 20 C -0.08 -0.54 5.34 -27.88 -0.15 -0.69 16 21 C -0.09 -0.68 5.13 -104.62 -0.54 -1.21 16 22 C -0.09 -0.67 9.70 -39.60 -0.38 -1.05 16 23 C -0.15 -1.24 10.03 -39.52 -0.40 -1.63 16 24 C 0.09 0.82 7.30 -39.42 -0.29 0.53 16 25 F -0.14 -1.44 17.27 2.25 0.04 -1.40 16 26 C -0.15 -1.23 10.03 -39.51 -0.40 -1.63 16 27 C -0.09 -0.67 9.70 -39.59 -0.38 -1.05 16 28 C 0.09 1.65 6.47 -2.41 -0.02 1.64 16 29 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 30 H 0.04 1.07 7.39 -51.93 -0.38 0.69 16 31 H 0.00 0.05 6.33 -51.93 -0.33 -0.28 16 32 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 1.21 6.36 -51.93 -0.33 0.88 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 40 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 41 H 0.08 0.42 8.08 -51.93 -0.42 0.00 16 42 H 0.08 0.42 8.08 -51.93 -0.42 0.00 16 43 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 44 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 45 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 47 H 0.07 1.38 7.06 -51.93 -0.37 1.01 16 48 H 0.07 1.53 8.03 -51.93 -0.42 1.11 16 LS Contribution 393.14 15.07 5.92 5.92 Total: -1.00 -32.01 393.14 -10.19 -42.20 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -7.65 Total: -1.87 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -3.09 Total: -0.73 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.47 Total: -49.95 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.01 -10.19 -42.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192498959.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.835 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds