Wall clock time and date at job start Tue Mar 31 2020 18:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36939 * 120.00238 * 2 1 4 4 H 1.07992 * 120.00485 * 203.30264 * 3 2 1 5 5 C 1.38815 * 119.99511 * 23.30548 * 3 2 1 6 6 N 1.31621 * 119.99952 * 13.98376 * 5 3 2 7 7 Si 1.86797 * 119.99858 * 193.98290 * 5 3 2 8 8 H 1.48506 * 109.47322 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.47371 * 120.00120 * 7 5 3 10 10 H 1.48499 * 109.47105 * 240.00115 * 7 5 3 11 11 C 1.46494 * 119.99888 * 180.02562 * 2 1 3 12 12 H 1.09004 * 110.88873 * 182.42499 * 11 2 1 13 13 C 1.55155 * 111.00816 * 58.54174 * 11 2 1 14 14 C 1.54324 * 102.94759 * 206.38599 * 13 11 2 15 15 N 1.47026 * 107.26666 * 22.19125 * 14 13 11 16 16 C 1.34774 * 125.64322 * 181.02431 * 15 14 13 17 17 O 1.21287 * 119.99634 * 180.02562 * 16 15 14 18 18 C 1.50699 * 120.00706 * 0.02562 * 16 15 14 19 19 C 1.52996 * 109.47506 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47056 * 179.97438 * 19 18 16 21 21 C 1.50703 * 109.47142 * 180.02562 * 20 19 18 22 22 C 1.38245 * 119.97386 * 269.72567 * 21 20 19 23 23 C 1.38193 * 120.02887 * 179.76226 * 22 21 20 24 24 C 1.38458 * 119.97041 * 0.51401 * 23 22 21 25 25 F 1.35105 * 120.02705 * 179.76305 * 24 23 22 26 26 C 1.38459 * 119.95326 * 359.74038 * 24 23 22 27 27 C 1.38200 * 119.96863 * 0.02562 * 26 24 23 28 28 C 1.47417 * 108.70348 * 1.28815 * 15 14 13 29 29 H 1.09005 * 109.46662 * 275.16381 * 1 2 3 30 30 H 1.08998 * 109.47178 * 35.16470 * 1 2 3 31 31 H 1.08998 * 109.47265 * 155.16879 * 1 2 3 32 32 H 0.97005 * 119.99761 * 180.02562 * 6 5 3 33 33 H 1.09000 * 110.72151 * 88.02229 * 13 11 2 34 34 H 1.08994 * 110.72115 * 324.75322 * 13 11 2 35 35 H 1.09003 * 109.88262 * 262.77905 * 14 13 11 36 36 H 1.08998 * 109.88401 * 141.61161 * 14 13 11 37 37 H 1.08999 * 109.46940 * 59.99780 * 18 16 15 38 38 H 1.08998 * 109.46934 * 300.00458 * 18 16 15 39 39 H 1.08998 * 109.47497 * 300.00235 * 19 18 16 40 40 H 1.09003 * 109.46963 * 60.00498 * 19 18 16 41 41 H 1.08996 * 109.47619 * 300.00115 * 20 19 18 42 42 H 1.08997 * 109.47414 * 60.00506 * 20 19 18 43 43 H 1.08006 * 119.98408 * 0.02562 * 22 21 20 44 44 H 1.08005 * 120.01709 * 180.24996 * 23 22 21 45 45 H 1.07995 * 120.01554 * 180.02562 * 26 24 23 46 46 H 1.08007 * 119.98682 * 179.97438 * 27 26 24 47 47 H 1.08999 * 110.36877 * 94.48389 * 28 15 14 48 48 H 1.09002 * 110.36849 * 216.80406 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1636 1.2241 -0.3700 5 6 1.5406 2.3390 0.4756 6 7 0.4273 2.2555 1.1729 7 14 2.3008 4.0091 0.1262 8 1 3.5404 3.8315 -0.6722 9 1 1.3366 4.8421 -0.6365 10 1 2.6296 4.6815 1.4088 11 6 2.1975 -1.2687 -0.0006 12 1 3.2730 -1.0966 0.0426 13 6 1.8209 -2.1278 -1.2365 14 6 2.0904 -3.5679 -0.7516 15 7 2.0434 -3.5496 0.7178 16 6 2.2486 -4.6104 1.5234 17 8 2.1844 -4.4789 2.7274 18 6 2.5578 -5.9600 0.9283 19 6 2.7458 -6.9817 2.0515 20 6 3.0590 -8.3520 1.4472 21 6 3.2436 -9.3586 2.5535 22 6 4.4993 -9.5716 3.0910 23 6 4.6690 -10.4908 4.1089 24 6 3.5825 -11.2062 4.5831 25 9 3.7480 -12.1086 5.5749 26 6 2.3262 -10.9958 4.0405 27 6 2.1582 -10.0726 3.0259 28 6 1.7284 -2.1803 1.1637 29 1 -0.3633 0.0925 1.0236 30 1 -0.3633 0.8401 -0.5918 31 1 -0.3634 -0.9326 -0.4316 32 1 0.0015 3.0613 1.5049 33 1 2.4579 -1.8814 -2.0860 34 1 0.7692 -1.9970 -1.4911 35 1 3.0750 -3.8938 -1.0870 36 1 1.3237 -4.2390 -1.1388 37 1 3.4724 -5.8962 0.3388 38 1 1.7333 -6.2719 0.2871 39 1 3.5704 -6.6697 2.6923 40 1 1.8313 -7.0457 2.6413 41 1 2.2341 -8.6639 0.8067 42 1 3.9732 -8.2885 0.8572 43 1 5.3474 -9.0164 2.7182 44 1 5.6495 -10.6542 4.5315 45 1 1.4780 -11.5530 4.4098 46 1 1.1783 -9.9086 2.6021 47 1 0.6560 -2.0713 1.3254 48 1 2.2764 -1.9427 2.0754 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192498959.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:30 Heat of formation + Delta-G solvation = -60.112511 kcal Electronic energy + Delta-G solvation = -27479.510966 eV Core-core repulsion = 23448.249258 eV Total energy + Delta-G solvation = -4031.261708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -49.89436 -41.07437 -40.12135 -38.93135 -36.53840 -35.71324 -33.50629 -32.05362 -32.03634 -31.13867 -29.52949 -28.08316 -27.58155 -25.25997 -23.98477 -23.91029 -23.14706 -21.76682 -20.93447 -20.00883 -18.94920 -18.63533 -18.02978 -17.58517 -17.37694 -16.71988 -16.65953 -16.58751 -16.18973 -15.77271 -15.28970 -15.02300 -14.95660 -14.73433 -14.42583 -14.38800 -14.28047 -14.12846 -13.92141 -13.68799 -13.39124 -13.10759 -13.00721 -12.81137 -12.68463 -12.47181 -12.41434 -12.40181 -12.15492 -12.03496 -12.01748 -11.95626 -11.79629 -11.50996 -11.37450 -10.84908 -10.66075 -10.03932 -9.60997 -9.47913 -8.79564 -7.84840 -5.35073 0.17251 0.30495 1.46508 1.47835 1.58359 1.69930 2.04201 2.51094 2.63631 3.27164 3.32583 3.54822 3.64089 3.77636 3.79809 3.95927 3.98982 4.09047 4.14011 4.22944 4.32685 4.38405 4.38956 4.42027 4.49158 4.63285 4.72199 4.73405 4.80384 4.81842 4.92373 4.94292 4.99817 5.05098 5.16808 5.19300 5.20721 5.22408 5.27400 5.31337 5.34292 5.45400 5.48749 5.64562 5.66077 5.69626 5.97622 6.30775 6.66124 7.12036 7.22785 7.83360 8.27458 9.17952 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.029156 B = 0.001687 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.110646 B =16596.831999 C =16851.697430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.601 5.601 3 C -0.265 4.265 4 H 0.076 0.924 5 C -0.054 4.054 6 N -0.939 5.939 7 Si 0.970 3.030 8 H -0.262 1.262 9 H -0.290 1.290 10 H -0.297 1.297 11 C 0.164 3.836 12 H 0.073 0.927 13 C -0.141 4.141 14 C 0.108 3.892 15 N -0.617 5.617 16 C 0.511 3.489 17 O -0.602 6.602 18 C -0.121 4.121 19 C -0.095 4.095 20 C -0.071 4.071 21 C -0.094 4.094 22 C -0.094 4.094 23 C -0.160 4.160 24 C 0.063 3.937 25 F -0.154 7.154 26 C -0.160 4.160 27 C -0.094 4.094 28 C 0.096 3.904 29 H -0.002 1.002 30 H 0.017 0.983 31 H 0.037 0.963 32 H 0.248 0.752 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.151 0.849 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.151 0.849 47 H 0.045 0.955 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.110 -27.771 -5.531 28.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.323 5.323 3 C -0.395 4.395 4 H 0.094 0.906 5 C -0.249 4.249 6 N -0.585 5.585 7 Si 0.799 3.201 8 H -0.186 1.186 9 H -0.217 1.217 10 H -0.224 1.224 11 C 0.055 3.945 12 H 0.091 0.909 13 C -0.181 4.181 14 C -0.014 4.014 15 N -0.351 5.351 16 C 0.303 3.697 17 O -0.484 6.484 18 C -0.160 4.160 19 C -0.133 4.133 20 C -0.108 4.108 21 C -0.095 4.095 22 C -0.112 4.112 23 C -0.179 4.179 24 C 0.044 3.956 25 F -0.133 7.133 26 C -0.179 4.179 27 C -0.112 4.112 28 C -0.030 4.030 29 H 0.016 0.984 30 H 0.036 0.964 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.169 0.831 44 H 0.163 0.837 45 H 0.163 0.837 46 H 0.169 0.831 47 H 0.064 0.936 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.003 -27.664 -4.786 28.709 hybrid contribution -0.071 1.305 1.113 1.717 sum 5.932 -26.359 -3.672 27.266 Atomic orbital electron populations 1.20488 0.82751 0.96163 0.97356 1.44059 1.02036 1.00989 1.85171 1.19627 0.99020 0.86383 1.34505 0.90597 1.25863 0.98751 1.02161 0.98150 1.70258 1.21754 1.27697 1.38789 0.85154 0.78143 0.79834 0.76998 1.18607 1.21697 1.22398 1.21683 0.95602 0.84589 0.92595 0.90929 1.23080 1.02811 0.93560 0.98651 1.22259 1.03933 0.97663 0.77528 1.48699 1.69142 1.08239 1.08988 1.21481 0.75486 0.86845 0.85904 1.90688 1.54398 1.86031 1.17254 1.21714 1.06216 0.88243 0.99845 1.21255 1.01775 0.93395 0.96892 1.20620 1.04721 0.90558 0.94861 1.20253 0.93156 0.97525 0.98523 1.21246 0.98213 0.96647 0.95049 1.21380 0.98837 0.98251 0.99410 1.18063 0.95818 0.92012 0.89663 1.91462 1.96440 1.65722 1.59666 1.21379 0.96124 1.01371 0.99002 1.21244 1.00062 0.94398 0.95461 1.22649 0.98951 0.82463 0.98920 0.98374 0.96438 0.94468 0.94279 0.88639 0.91118 0.88251 0.88624 0.85833 0.85892 0.93066 0.93096 0.88542 0.88517 0.83104 0.83748 0.83749 0.83117 0.93636 0.94619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.57 7.60 127.77 0.97 9.54 16 2 N -0.60 -29.10 2.96 -694.60 -2.05 -31.16 16 3 C -0.27 -14.22 9.60 84.03 0.81 -13.41 16 4 H 0.08 3.90 7.86 -2.91 -0.02 3.88 16 5 C -0.05 -3.00 5.08 84.86 0.43 -2.57 16 6 N -0.94 -55.86 10.78 21.65 0.23 -55.63 16 7 Si 0.97 44.63 29.58 68.60 2.03 46.66 16 8 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 9 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 10 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 11 C 0.16 6.25 3.55 46.46 0.17 6.42 16 12 H 0.07 2.81 7.95 -2.38 -0.02 2.79 16 13 C -0.14 -3.76 6.49 31.78 0.21 -3.56 16 14 C 0.11 2.10 6.49 86.73 0.56 2.66 16 15 N -0.62 -17.82 3.32 -811.36 -2.70 -20.52 16 16 C 0.51 14.62 7.85 87.66 0.69 15.31 16 17 O -0.60 -23.81 16.24 -3.05 -0.05 -23.86 16 18 C -0.12 -1.80 4.89 29.85 0.15 -1.66 16 19 C -0.09 -1.54 4.49 30.59 0.14 -1.40 16 20 C -0.07 -0.65 5.34 29.85 0.16 -0.49 16 21 C -0.09 -1.24 5.13 -19.86 -0.10 -1.35 16 22 C -0.09 -1.27 9.70 22.26 0.22 -1.05 16 23 C -0.16 -2.51 10.03 22.31 0.22 -2.28 16 24 C 0.06 1.16 7.30 22.37 0.16 1.32 16 25 F -0.15 -3.18 17.27 44.97 0.78 -2.40 16 26 C -0.16 -2.51 10.03 22.31 0.22 -2.28 16 27 C -0.09 -1.27 9.70 22.26 0.22 -1.05 16 28 C 0.10 3.73 6.47 86.93 0.56 4.29 16 29 H 0.00 -0.11 7.33 -2.38 -0.02 -0.13 16 30 H 0.02 0.89 7.39 -2.39 -0.02 0.88 16 31 H 0.04 1.50 6.33 -2.39 -0.02 1.48 16 32 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 33 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.07 1.99 6.36 -2.39 -0.02 1.98 16 35 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 40 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 41 H 0.10 0.55 8.08 -2.39 -0.02 0.53 16 42 H 0.10 0.55 8.08 -2.39 -0.02 0.54 16 43 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 45 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 46 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 47 H 0.05 1.94 7.06 -2.39 -0.02 1.92 16 48 H 0.04 1.60 8.03 -2.39 -0.02 1.58 16 Total: -1.00 -75.28 393.14 4.95 -70.33 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 0.94 Total: 8.14 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 5.78 Total: 8.43 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -4.52 Total: -107.30 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.05 Total: -23.86 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -75.28 4.95 -70.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192498959.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.217 kcal (2) G-P(sol) polarization free energy of solvation -75.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds