Wall clock time and date at job start Tue Mar 31 2020 18:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36938 * 120.00158 * 2 1 4 4 H 1.08004 * 120.00240 * 205.94993 * 3 2 1 5 5 C 1.38818 * 120.00001 * 25.94965 * 3 2 1 6 6 N 1.31608 * 119.99839 * 24.08429 * 5 3 2 7 7 Si 1.86799 * 119.99883 * 204.08290 * 5 3 2 8 8 H 1.48499 * 109.46863 * 90.00144 * 7 5 3 9 9 H 1.48503 * 109.47038 * 209.99686 * 7 5 3 10 10 H 1.48495 * 109.47474 * 330.00110 * 7 5 3 11 11 C 1.46496 * 119.99981 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47460 * 89.99804 * 11 2 1 13 13 C 1.53001 * 109.47380 * 180.02562 * 12 11 2 14 14 N 1.46497 * 109.47322 * 179.97438 * 13 12 11 15 15 C 1.34781 * 120.00139 * 180.02562 * 14 13 12 16 16 O 1.21277 * 119.99509 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99730 * 179.97438 * 15 14 13 18 18 H 1.08999 * 112.85080 * 314.61903 * 17 15 14 19 19 C 1.53779 * 113.61024 * 183.42146 * 17 15 14 20 20 C 1.53782 * 87.08511 * 270.88694 * 19 17 15 21 21 C 1.53785 * 87.08003 * 334.56892 * 20 19 17 22 22 H 1.09007 * 113.61367 * 270.88585 * 21 20 19 23 23 C 1.50698 * 113.61612 * 139.98010 * 21 20 19 24 24 C 1.38251 * 119.97097 * 150.67504 * 23 21 20 25 25 C 1.38199 * 120.02158 * 179.77043 * 24 23 21 26 26 C 1.38462 * 119.97497 * 0.50028 * 25 24 23 27 27 F 1.35096 * 120.02892 * 179.76725 * 26 25 24 28 28 C 1.38468 * 119.94804 * 359.75586 * 26 25 24 29 29 C 1.38197 * 119.97329 * 359.97438 * 28 26 25 30 30 H 1.09007 * 109.47059 * 266.36067 * 1 2 3 31 31 H 1.09005 * 109.47280 * 26.35005 * 1 2 3 32 32 H 1.08994 * 109.47691 * 146.35684 * 1 2 3 33 33 H 0.97002 * 120.00008 * 180.02562 * 6 5 3 34 34 H 1.09004 * 109.47082 * 209.99727 * 11 2 1 35 35 H 1.09000 * 109.47140 * 329.99179 * 11 2 1 36 36 H 1.09004 * 109.46910 * 300.00028 * 12 11 2 37 37 H 1.08997 * 109.46959 * 59.99688 * 12 11 2 38 38 H 1.09004 * 109.46986 * 299.99815 * 13 12 11 39 39 H 1.09004 * 109.46880 * 59.99522 * 13 12 11 40 40 H 0.97000 * 119.99489 * 359.97438 * 14 13 12 41 41 H 1.08997 * 113.61699 * 25.43482 * 19 17 15 42 42 H 1.09000 * 113.61713 * 156.25282 * 19 17 15 43 43 H 1.08994 * 113.61577 * 89.11498 * 20 19 17 44 44 H 1.09003 * 113.61425 * 219.94147 * 20 19 17 45 45 H 1.07999 * 119.98488 * 0.02562 * 24 23 21 46 46 H 1.07994 * 120.01422 * 180.26066 * 25 24 23 47 47 H 1.08000 * 120.01234 * 180.02562 * 28 26 25 48 48 H 1.07996 * 119.98872 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1481 1.2331 -0.4093 5 6 1.5606 2.3275 0.5261 6 7 0.6019 2.2204 1.4213 7 14 2.1287 4.0157 -0.0367 8 1 1.3250 4.4426 -1.2102 9 1 1.9492 4.9920 1.0678 10 1 3.5633 3.9545 -0.4152 11 6 2.1974 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4432 13 6 3.2169 -3.0352 -1.4438 14 7 3.4605 -3.4579 -2.8252 15 6 4.1220 -4.6059 -3.0719 16 8 4.5160 -5.2888 -2.1503 17 6 4.3721 -5.0409 -4.4929 18 1 3.4906 -4.9438 -5.1267 19 6 5.0639 -6.4097 -4.6053 20 6 6.4003 -5.6513 -4.5460 21 6 5.6450 -4.4351 -5.1076 22 1 5.6280 -4.3965 -6.1968 23 6 6.0549 -3.1276 -4.4805 24 6 5.9723 -1.9560 -5.2098 25 6 6.3435 -0.7556 -4.6342 26 6 6.8079 -0.7281 -3.3301 27 9 7.1755 0.4440 -2.7679 28 6 6.8952 -1.9030 -2.6024 29 6 6.5182 -3.1013 -3.1783 30 1 -0.3633 -0.0652 1.0257 31 1 -0.3634 0.9209 -0.4561 32 1 -0.3634 -0.8555 -0.5693 33 1 0.1900 3.0181 1.7886 34 1 3.1499 -1.1386 0.5133 35 1 1.6084 -2.0285 0.5131 36 1 1.5000 -1.8400 -1.9571 37 1 3.0415 -0.9500 -1.9568 38 1 4.1693 -2.9055 -0.9298 39 1 2.6274 -3.7948 -0.9303 40 1 3.1450 -2.9118 -3.5622 41 1 4.8913 -7.0580 -3.7463 42 1 4.8869 -6.9116 -5.5566 43 1 6.7739 -5.5035 -3.5328 44 1 7.1575 -6.0473 -5.2228 45 1 5.6138 -1.9783 -6.2283 46 1 6.2750 0.1601 -5.2026 47 1 7.2569 -1.8827 -1.5850 48 1 6.5865 -4.0179 -2.6111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265895715.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:48 Heat of formation + Delta-G solvation = -21.148652 kcal Electronic energy + Delta-G solvation = -29406.242939 eV Core-core repulsion = 25376.670831 eV Total energy + Delta-G solvation = -4029.572108 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -48.85313 -41.22123 -38.79226 -37.45139 -36.12684 -34.68608 -32.01276 -31.29457 -30.93026 -30.11869 -27.15347 -25.84825 -25.54406 -24.96480 -23.39069 -22.17437 -21.83173 -21.09811 -20.36305 -19.01575 -17.87742 -17.09079 -16.68144 -16.56900 -16.10021 -15.72466 -15.49079 -15.33986 -15.03372 -14.71884 -14.59784 -14.07951 -13.72543 -13.66520 -13.42639 -13.21856 -13.12893 -12.93361 -12.78731 -12.62753 -12.21325 -11.96155 -11.66213 -11.42498 -11.36313 -11.09747 -11.03996 -10.88585 -10.75750 -10.73583 -10.54762 -10.45956 -10.21664 -9.88438 -9.79353 -9.75191 -9.21596 -8.92871 -8.61864 -8.46163 -6.71285 -5.77012 -3.18184 0.98504 1.11556 2.60175 3.21198 3.39769 3.42096 3.47186 3.48970 4.17933 4.22997 4.34636 4.39284 4.52687 4.54010 4.67795 4.75051 4.80358 5.01761 5.10263 5.16451 5.24731 5.33664 5.39729 5.41760 5.47706 5.56403 5.70874 5.77198 5.81445 5.83628 5.89592 5.91565 6.02369 6.07945 6.12827 6.14740 6.21082 6.38041 6.43607 6.60312 6.71807 6.77911 6.79532 6.94937 7.24407 7.55379 7.58464 7.84984 8.26476 8.42069 9.22080 9.87729 10.39684 11.29575 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012658 B = 0.003468 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.503958 B = 8071.439290 C = 9661.763286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.597 5.597 3 C -0.263 4.263 4 H 0.066 0.934 5 C 0.008 3.992 6 N -0.895 5.895 7 Si 0.894 3.106 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.278 1.278 11 C 0.155 3.845 12 C -0.148 4.148 13 C 0.122 3.878 14 N -0.718 5.718 15 C 0.533 3.467 16 O -0.544 6.544 17 C -0.134 4.134 18 H 0.100 0.900 19 C -0.121 4.121 20 C -0.135 4.135 21 C -0.053 4.053 22 H 0.108 0.892 23 C -0.096 4.096 24 C -0.085 4.085 25 C -0.154 4.154 26 C 0.104 3.896 27 F -0.138 7.138 28 C -0.146 4.146 29 C -0.080 4.080 30 H 0.020 0.980 31 H 0.043 0.957 32 H 0.001 0.999 33 H 0.253 0.747 34 H 0.048 0.952 35 H 0.036 0.964 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.399 0.601 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.130 0.870 46 H 0.134 0.866 47 H 0.134 0.866 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.450 -15.103 -16.817 24.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.320 5.320 3 C -0.392 4.392 4 H 0.084 0.916 5 C -0.192 4.192 6 N -0.538 5.538 7 Si 0.723 3.277 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.203 1.203 11 C 0.027 3.973 12 C -0.189 4.189 13 C -0.001 4.001 14 N -0.368 5.368 15 C 0.319 3.681 16 O -0.422 6.422 17 C -0.155 4.155 18 H 0.118 0.882 19 C -0.159 4.159 20 C -0.172 4.172 21 C -0.071 4.071 22 H 0.126 0.874 23 C -0.097 4.097 24 C -0.103 4.103 25 C -0.172 4.172 26 C 0.085 3.915 27 F -0.116 7.116 28 C -0.165 4.165 29 C -0.098 4.098 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.019 0.981 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.233 0.767 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.148 0.852 46 H 0.152 0.848 47 H 0.152 0.848 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.623 -15.391 -15.983 24.601 hybrid contribution -0.030 1.704 -0.506 1.777 sum 10.593 -13.688 -16.489 23.905 Atomic orbital electron populations 1.20717 0.83227 0.96911 0.97896 1.43848 1.01465 1.00790 1.85863 1.19104 1.00571 0.85804 1.33722 0.91617 1.24961 0.99296 0.98477 0.96428 1.70149 1.28853 1.28034 1.26732 0.86421 0.78553 0.84607 0.78100 1.21467 1.21822 1.20277 1.20586 0.96346 0.88546 0.91800 1.22473 0.99333 0.94298 1.02769 1.21417 1.00238 0.96852 0.81614 1.46083 1.57544 1.23473 1.09692 1.19853 0.77344 0.80791 0.90160 1.90677 1.51366 1.54169 1.46010 1.22597 0.99083 0.99103 0.94746 0.88226 1.22727 0.95252 0.94913 1.02981 1.23102 0.96912 0.95003 1.02219 1.21463 0.94704 0.91149 0.99829 0.87361 1.19698 1.00926 0.94631 0.94410 1.20834 0.98652 0.90996 0.99801 1.21131 1.02285 0.99680 0.94153 1.17783 0.99871 0.81472 0.92399 1.91532 1.89064 1.45805 1.85210 1.21163 1.03011 0.91467 1.00888 1.21044 0.96424 0.97818 0.94485 0.96187 0.93788 0.98091 0.93730 0.93313 0.94605 0.92379 0.91659 0.91813 0.91907 0.76735 0.89746 0.89431 0.89074 0.90947 0.85178 0.84806 0.84792 0.84670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 9.10 59.84 0.54 4.40 16 2 N -0.60 -15.10 2.90 -181.12 -0.53 -15.62 16 3 C -0.26 -7.31 9.53 -15.06 -0.14 -7.45 16 4 H 0.07 1.82 7.94 -52.48 -0.42 1.40 16 5 C 0.01 0.23 4.75 -17.43 -0.08 0.15 16 6 N -0.89 -26.53 11.70 55.49 0.65 -25.88 16 7 Si 0.89 22.05 29.62 -169.99 -5.03 17.01 16 8 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 9 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 C 0.16 3.19 5.68 -4.04 -0.02 3.16 16 12 C -0.15 -2.46 5.65 -26.73 -0.15 -2.61 16 13 C 0.12 1.76 5.67 -4.04 -0.02 1.74 16 14 N -0.72 -8.64 5.09 -60.29 -0.31 -8.95 16 15 C 0.53 6.42 4.48 -10.99 -0.05 6.37 16 16 O -0.54 -8.34 14.94 5.56 0.08 -8.26 16 17 C -0.13 -1.14 4.26 -90.96 -0.39 -1.53 16 18 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 19 C -0.12 -0.94 7.44 -25.92 -0.19 -1.13 16 20 C -0.14 -1.06 7.07 -25.92 -0.18 -1.24 16 21 C -0.05 -0.39 3.96 -90.95 -0.36 -0.75 16 22 H 0.11 0.58 8.12 -51.93 -0.42 0.16 16 23 C -0.10 -0.91 4.66 -104.62 -0.49 -1.40 16 24 C -0.08 -0.76 9.72 -39.59 -0.38 -1.15 16 25 C -0.15 -1.67 10.03 -39.51 -0.40 -2.07 16 26 C 0.10 1.36 7.30 -39.41 -0.29 1.07 16 27 F -0.14 -2.08 17.27 2.25 0.04 -2.04 16 28 C -0.15 -1.82 10.03 -39.51 -0.40 -2.21 16 29 C -0.08 -0.90 7.34 -39.59 -0.29 -1.19 16 30 H 0.02 0.52 7.81 -51.92 -0.41 0.12 16 31 H 0.04 1.15 7.25 -51.93 -0.38 0.77 16 32 H 0.00 0.01 8.10 -51.93 -0.42 -0.41 16 33 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 35 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.40 4.20 8.47 -40.82 -0.35 3.85 16 41 H 0.08 0.81 7.48 -51.93 -0.39 0.42 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.88 5.73 -51.93 -0.30 0.58 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 46 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 47 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 48 H 0.14 1.60 5.07 -52.49 -0.27 1.33 16 LS Contribution 391.09 15.07 5.89 5.89 Total: -1.00 -32.35 391.09 -10.04 -42.39 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.54 Total: 1.30 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -3.30 Total: -5.84 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.18 Total: -50.45 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.08 Total: -8.26 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.35 -10.04 -42.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265895715.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.242 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds