Wall clock time and date at job start Tue Mar 31 2020 18:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36938 * 120.00158 * 2 1 4 4 H 1.08004 * 120.00240 * 205.94993 * 3 2 1 5 5 C 1.38818 * 120.00001 * 25.94965 * 3 2 1 6 6 N 1.31608 * 119.99839 * 24.08429 * 5 3 2 7 7 Si 1.86799 * 119.99883 * 204.08290 * 5 3 2 8 8 H 1.48499 * 109.46863 * 90.00144 * 7 5 3 9 9 H 1.48503 * 109.47038 * 209.99686 * 7 5 3 10 10 H 1.48495 * 109.47474 * 330.00110 * 7 5 3 11 11 C 1.46496 * 119.99981 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47460 * 89.99804 * 11 2 1 13 13 C 1.53001 * 109.47380 * 180.02562 * 12 11 2 14 14 N 1.46497 * 109.47322 * 179.97438 * 13 12 11 15 15 C 1.34781 * 120.00139 * 180.02562 * 14 13 12 16 16 O 1.21277 * 119.99509 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99730 * 179.97438 * 15 14 13 18 18 H 1.08999 * 112.85080 * 314.61903 * 17 15 14 19 19 C 1.53779 * 113.61024 * 183.42146 * 17 15 14 20 20 C 1.53782 * 87.08511 * 270.88694 * 19 17 15 21 21 C 1.53785 * 87.08003 * 334.56892 * 20 19 17 22 22 H 1.09007 * 113.61367 * 270.88585 * 21 20 19 23 23 C 1.50698 * 113.61612 * 139.98010 * 21 20 19 24 24 C 1.38251 * 119.97097 * 150.67504 * 23 21 20 25 25 C 1.38199 * 120.02158 * 179.77043 * 24 23 21 26 26 C 1.38462 * 119.97497 * 0.50028 * 25 24 23 27 27 F 1.35096 * 120.02892 * 179.76725 * 26 25 24 28 28 C 1.38468 * 119.94804 * 359.75586 * 26 25 24 29 29 C 1.38197 * 119.97329 * 359.97438 * 28 26 25 30 30 H 1.09007 * 109.47059 * 266.36067 * 1 2 3 31 31 H 1.09005 * 109.47280 * 26.35005 * 1 2 3 32 32 H 1.08994 * 109.47691 * 146.35684 * 1 2 3 33 33 H 0.97002 * 120.00008 * 180.02562 * 6 5 3 34 34 H 1.09004 * 109.47082 * 209.99727 * 11 2 1 35 35 H 1.09000 * 109.47140 * 329.99179 * 11 2 1 36 36 H 1.09004 * 109.46910 * 300.00028 * 12 11 2 37 37 H 1.08997 * 109.46959 * 59.99688 * 12 11 2 38 38 H 1.09004 * 109.46986 * 299.99815 * 13 12 11 39 39 H 1.09004 * 109.46880 * 59.99522 * 13 12 11 40 40 H 0.97000 * 119.99489 * 359.97438 * 14 13 12 41 41 H 1.08997 * 113.61699 * 25.43482 * 19 17 15 42 42 H 1.09000 * 113.61713 * 156.25282 * 19 17 15 43 43 H 1.08994 * 113.61577 * 89.11498 * 20 19 17 44 44 H 1.09003 * 113.61425 * 219.94147 * 20 19 17 45 45 H 1.07999 * 119.98488 * 0.02562 * 24 23 21 46 46 H 1.07994 * 120.01422 * 180.26066 * 25 24 23 47 47 H 1.08000 * 120.01234 * 180.02562 * 28 26 25 48 48 H 1.07996 * 119.98872 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1481 1.2331 -0.4093 5 6 1.5606 2.3275 0.5261 6 7 0.6019 2.2204 1.4213 7 14 2.1287 4.0157 -0.0367 8 1 1.3250 4.4426 -1.2102 9 1 1.9492 4.9920 1.0678 10 1 3.5633 3.9545 -0.4152 11 6 2.1974 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4432 13 6 3.2169 -3.0352 -1.4438 14 7 3.4605 -3.4579 -2.8252 15 6 4.1220 -4.6059 -3.0719 16 8 4.5160 -5.2888 -2.1503 17 6 4.3721 -5.0409 -4.4929 18 1 3.4906 -4.9438 -5.1267 19 6 5.0639 -6.4097 -4.6053 20 6 6.4003 -5.6513 -4.5460 21 6 5.6450 -4.4351 -5.1076 22 1 5.6280 -4.3965 -6.1968 23 6 6.0549 -3.1276 -4.4805 24 6 5.9723 -1.9560 -5.2098 25 6 6.3435 -0.7556 -4.6342 26 6 6.8079 -0.7281 -3.3301 27 9 7.1755 0.4440 -2.7679 28 6 6.8952 -1.9030 -2.6024 29 6 6.5182 -3.1013 -3.1783 30 1 -0.3633 -0.0652 1.0257 31 1 -0.3634 0.9209 -0.4561 32 1 -0.3634 -0.8555 -0.5693 33 1 0.1900 3.0181 1.7886 34 1 3.1499 -1.1386 0.5133 35 1 1.6084 -2.0285 0.5131 36 1 1.5000 -1.8400 -1.9571 37 1 3.0415 -0.9500 -1.9568 38 1 4.1693 -2.9055 -0.9298 39 1 2.6274 -3.7948 -0.9303 40 1 3.1450 -2.9118 -3.5622 41 1 4.8913 -7.0580 -3.7463 42 1 4.8869 -6.9116 -5.5566 43 1 6.7739 -5.5035 -3.5328 44 1 7.1575 -6.0473 -5.2228 45 1 5.6138 -1.9783 -6.2283 46 1 6.2750 0.1601 -5.2026 47 1 7.2569 -1.8827 -1.5850 48 1 6.5865 -4.0179 -2.6111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265895715.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:47 Heat of formation + Delta-G solvation = -39.151672 kcal Electronic energy + Delta-G solvation = -29407.023608 eV Core-core repulsion = 25376.670831 eV Total energy + Delta-G solvation = -4030.352777 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -49.91342 -42.01369 -39.71248 -38.38066 -37.73335 -36.06592 -33.79638 -32.13008 -31.82653 -31.70441 -28.25280 -27.82327 -26.35330 -26.22261 -24.30300 -23.60088 -22.69017 -22.18977 -21.87025 -19.91417 -18.78007 -18.72420 -17.92425 -17.45467 -17.17889 -16.84949 -16.71614 -16.55072 -16.12998 -16.09484 -15.55707 -15.40639 -15.19340 -14.69859 -14.61082 -14.48592 -14.39630 -14.18577 -13.77277 -13.66211 -13.41356 -13.04552 -12.89843 -12.88263 -12.72694 -12.59777 -12.52465 -12.31683 -12.15304 -12.11272 -11.87364 -11.78663 -11.52158 -11.34861 -11.20554 -10.77051 -10.57157 -10.07230 -9.99428 -9.48762 -8.78466 -7.91153 -5.35146 0.11905 0.27944 1.43523 1.44976 1.54160 1.68485 2.24724 2.49900 2.58289 3.20928 3.31826 3.53939 3.61895 3.65147 3.76648 3.82429 3.93188 3.95872 4.04762 4.09691 4.27353 4.31615 4.38547 4.45249 4.46658 4.63118 4.72251 4.77728 4.83992 4.85704 4.90906 4.98350 4.99685 5.04390 5.14450 5.17301 5.18505 5.22626 5.27371 5.30078 5.42800 5.44489 5.52063 5.53683 5.64661 5.66099 5.93677 6.31054 6.63985 7.10845 7.32834 7.83533 8.30031 9.13484 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012658 B = 0.003468 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.503958 B = 8071.439290 C = 9661.763286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.615 5.615 3 C -0.269 4.269 4 H 0.061 0.939 5 C -0.043 4.043 6 N -0.928 5.928 7 Si 0.957 3.043 8 H -0.282 1.282 9 H -0.294 1.294 10 H -0.272 1.272 11 C 0.151 3.849 12 C -0.123 4.123 13 C 0.136 3.864 14 N -0.713 5.713 15 C 0.529 3.471 16 O -0.583 6.583 17 C -0.133 4.133 18 H 0.130 0.870 19 C -0.116 4.116 20 C -0.141 4.141 21 C -0.041 4.041 22 H 0.149 0.851 23 C -0.090 4.090 24 C -0.072 4.072 25 C -0.156 4.156 26 C 0.071 3.929 27 F -0.158 7.158 28 C -0.164 4.164 29 C -0.087 4.087 30 H -0.005 1.005 31 H 0.021 0.979 32 H 0.038 0.962 33 H 0.251 0.749 34 H 0.034 0.966 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.061 0.939 40 H 0.410 0.590 41 H 0.058 0.942 42 H 0.120 0.880 43 H 0.063 0.937 44 H 0.092 0.908 45 H 0.172 0.828 46 H 0.148 0.852 47 H 0.123 0.877 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.238 -16.238 -20.781 28.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.338 5.338 3 C -0.399 4.399 4 H 0.079 0.921 5 C -0.240 4.240 6 N -0.573 5.573 7 Si 0.785 3.215 8 H -0.208 1.208 9 H -0.221 1.221 10 H -0.197 1.197 11 C 0.024 3.976 12 C -0.163 4.163 13 C 0.012 3.988 14 N -0.363 5.363 15 C 0.317 3.683 16 O -0.463 6.463 17 C -0.154 4.154 18 H 0.148 0.852 19 C -0.154 4.154 20 C -0.178 4.178 21 C -0.059 4.059 22 H 0.167 0.833 23 C -0.090 4.090 24 C -0.089 4.089 25 C -0.174 4.174 26 C 0.052 3.948 27 F -0.137 7.137 28 C -0.183 4.183 29 C -0.105 4.105 30 H 0.013 0.987 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.245 0.755 41 H 0.077 0.923 42 H 0.138 0.862 43 H 0.082 0.918 44 H 0.110 0.890 45 H 0.189 0.811 46 H 0.166 0.834 47 H 0.141 0.859 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.425 -16.550 -19.982 27.962 hybrid contribution 0.077 1.929 0.766 2.077 sum 10.502 -14.620 -19.216 26.331 Atomic orbital electron populations 1.20538 0.82961 0.97305 0.96770 1.44100 1.01948 1.01613 1.86109 1.19339 1.00577 0.87134 1.32878 0.92079 1.25690 0.99914 1.01727 0.96662 1.70266 1.30377 1.28639 1.28048 0.85430 0.78308 0.80304 0.77463 1.20809 1.22052 1.19706 1.20744 0.95364 0.87130 0.94354 1.22073 0.99845 0.94830 0.99561 1.21050 0.99007 0.95545 0.83243 1.45947 1.57711 1.23880 1.08783 1.20578 0.76118 0.79941 0.91656 1.90669 1.52645 1.55229 1.47744 1.22635 1.00879 0.99651 0.92253 0.85161 1.22783 0.94759 0.94232 1.03585 1.23095 0.97708 0.95679 1.01311 1.21624 0.93357 0.89249 1.01693 0.83293 1.19986 0.99476 0.96170 0.93409 1.21249 0.96883 0.89579 1.01237 1.21419 1.01570 1.01317 0.93121 1.18139 1.01972 0.80892 0.93813 1.91470 1.89607 1.46870 1.85754 1.21184 1.04124 0.92207 1.00798 1.21018 0.97158 0.96666 0.95650 0.98656 0.96029 0.94318 0.94046 0.94717 0.93412 0.91326 0.92943 0.93401 0.92082 0.75455 0.92274 0.86154 0.91817 0.88990 0.81073 0.83421 0.85937 0.85868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.30 9.10 127.77 1.16 9.46 16 2 N -0.61 -31.22 2.90 -726.93 -2.11 -33.32 16 3 C -0.27 -15.15 9.53 84.03 0.80 -14.35 16 4 H 0.06 3.43 7.94 -2.91 -0.02 3.41 16 5 C -0.04 -2.48 4.75 84.87 0.40 -2.07 16 6 N -0.93 -56.07 11.70 21.65 0.25 -55.82 16 7 Si 0.96 45.84 29.62 68.60 2.03 47.87 16 8 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 9 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 10 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 11 C 0.15 6.19 5.68 86.38 0.49 6.68 16 12 C -0.12 -3.98 5.65 30.59 0.17 -3.80 16 13 C 0.14 3.86 5.67 86.38 0.49 4.35 16 14 N -0.71 -15.97 5.09 -463.06 -2.36 -18.32 16 15 C 0.53 11.92 4.48 87.66 0.39 12.31 16 16 O -0.58 -17.89 14.94 -3.02 -0.05 -17.94 16 17 C -0.13 -1.76 4.26 -11.01 -0.05 -1.81 16 18 H 0.13 1.01 8.14 -2.39 -0.02 1.00 16 19 C -0.12 -1.43 7.44 31.12 0.23 -1.20 16 20 C -0.14 -1.83 7.07 31.12 0.22 -1.61 16 21 C -0.04 -0.43 3.96 -11.01 -0.04 -0.48 16 22 H 0.15 0.52 8.12 -2.38 -0.02 0.50 16 23 C -0.09 -1.45 4.66 -19.86 -0.09 -1.55 16 24 C -0.07 -1.02 9.72 22.26 0.22 -0.81 16 25 C -0.16 -3.11 10.03 22.31 0.22 -2.89 16 26 C 0.07 1.89 7.30 22.38 0.16 2.06 16 27 F -0.16 -5.02 17.27 44.97 0.78 -4.24 16 28 C -0.16 -4.30 10.03 22.31 0.22 -4.07 16 29 C -0.09 -1.95 7.34 22.26 0.16 -1.78 16 30 H 0.00 -0.26 7.81 -2.38 -0.02 -0.28 16 31 H 0.02 1.11 7.25 -2.38 -0.02 1.10 16 32 H 0.04 1.57 8.10 -2.39 -0.02 1.55 16 33 H 0.25 14.61 8.31 -92.71 -0.77 13.83 16 34 H 0.03 1.50 8.04 -2.38 -0.02 1.48 16 35 H 0.05 1.84 8.07 -2.39 -0.02 1.82 16 36 H 0.07 2.10 8.14 -2.38 -0.02 2.09 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.41 7.45 8.47 -92.71 -0.79 6.66 16 41 H 0.06 1.06 7.48 -2.39 -0.02 1.04 16 42 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.06 1.20 5.73 -2.39 -0.01 1.19 16 44 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 46 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 47 H 0.12 3.28 8.06 -2.91 -0.02 3.26 16 48 H 0.12 3.06 5.07 -2.91 -0.01 3.04 16 Total: -1.00 -73.15 391.09 3.90 -69.25 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.18 Total: 14.06 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 5.17 Total: -1.55 kcal Atomic # 7 Polarization: -103.25 SS G_CDS: -4.21 Total: -107.46 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.05 Total: -17.94 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.78 Total: -4.24 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -73.15 3.90 -69.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265895715.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.102 kcal (2) G-P(sol) polarization free energy of solvation -73.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds