Wall clock time and date at job start Tue Mar 31 2020 18:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47376 * 2 1 4 4 C 1.36939 * 120.00083 * 275.47350 * 3 2 1 5 5 H 1.07995 * 119.99810 * 41.47045 * 4 3 2 6 6 C 1.38817 * 119.99784 * 221.47066 * 4 3 2 7 7 N 1.31615 * 120.00073 * 18.77708 * 6 4 3 8 8 Si 1.86797 * 119.99708 * 198.77642 * 6 4 3 9 9 H 1.48507 * 109.46827 * 90.00175 * 8 6 4 10 10 H 1.48504 * 109.46845 * 209.99835 * 8 6 4 11 11 H 1.48500 * 109.47211 * 330.00063 * 8 6 4 12 12 C 1.46497 * 119.99722 * 95.46936 * 3 2 1 13 13 C 1.53001 * 109.47296 * 269.99807 * 12 3 2 14 14 C 1.53004 * 109.46992 * 179.97438 * 13 12 3 15 15 N 1.46500 * 109.46894 * 180.02562 * 14 13 12 16 16 C 1.34775 * 120.00074 * 180.02562 * 15 14 13 17 17 O 1.21287 * 119.99726 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00104 * 180.02562 * 16 15 14 19 19 C 1.50702 * 115.54803 * 325.57744 * 18 16 15 20 20 C 1.38213 * 120.01003 * 96.51110 * 19 18 16 21 21 C 1.38225 * 120.02301 * 179.97438 * 20 19 18 22 22 C 1.38270 * 120.05415 * 0.02562 * 21 20 19 23 23 C 1.38178 * 120.02011 * 359.96307 * 22 21 20 24 24 C 1.38438 * 120.01110 * 276.46705 * 19 18 16 25 25 F 1.35100 * 120.02815 * 0.04855 * 24 19 18 26 26 C 1.52993 * 117.52026 * 111.28323 * 18 16 15 27 27 C 1.52999 * 60.00402 * 107.47861 * 26 18 16 28 28 H 1.09006 * 109.47279 * 300.00349 * 1 2 3 29 29 H 1.09010 * 109.47036 * 59.99794 * 1 2 3 30 30 H 1.09000 * 109.47679 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47474 * 240.00342 * 2 1 3 32 32 H 1.09001 * 109.47319 * 120.00085 * 2 1 3 33 33 H 0.97002 * 120.00532 * 180.02562 * 7 6 4 34 34 H 1.09008 * 109.47000 * 150.00359 * 12 3 2 35 35 H 1.09000 * 109.47472 * 30.00377 * 12 3 2 36 36 H 1.08999 * 109.46770 * 60.00914 * 13 12 3 37 37 H 1.08996 * 109.47357 * 299.99909 * 13 12 3 38 38 H 1.09008 * 109.47103 * 60.00675 * 14 13 12 39 39 H 1.09000 * 109.47674 * 300.00507 * 14 13 12 40 40 H 0.96997 * 120.00348 * 0.02562 * 15 14 13 41 41 H 1.08000 * 119.99190 * 359.96229 * 20 19 18 42 42 H 1.08003 * 119.97718 * 180.02562 * 21 20 19 43 43 H 1.07997 * 119.99072 * 179.97438 * 22 21 20 44 44 H 1.08001 * 120.00682 * 179.74802 * 23 22 21 45 45 H 1.09005 * 117.49969 * 214.97242 * 26 18 16 46 46 H 1.09001 * 117.50097 * 359.97438 * 26 18 16 47 47 H 1.08998 * 117.49643 * 252.51468 * 27 26 18 48 48 H 1.08997 * 117.51421 * 107.47859 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1400 2.0644 -1.1805 5 1 1.3728 1.9783 -1.9357 6 6 3.2494 2.8677 -1.4064 7 7 4.3394 2.7015 -0.6878 8 14 3.1950 4.1844 -2.7303 9 1 2.7031 5.4567 -2.1431 10 1 4.5587 4.3884 -3.2817 11 1 2.2801 3.7550 -3.8183 12 6 2.3765 2.0314 1.2630 13 6 1.1475 2.7365 1.8401 14 6 1.5215 3.4151 3.1595 15 7 0.3445 4.0897 3.7125 16 6 0.4373 4.7594 4.8783 17 8 1.4952 4.8032 5.4699 18 6 -0.7736 5.4530 5.4474 19 6 -1.7186 6.0464 4.4346 20 6 -2.8359 5.3385 4.0336 21 6 -3.7031 5.8828 3.1051 22 6 -3.4538 7.1356 2.5758 23 6 -2.3375 7.8452 2.9753 24 6 -1.4684 7.3013 3.9061 25 9 -0.3765 7.9941 4.2972 26 6 -1.3812 4.8773 6.7281 27 6 -0.6042 6.1945 6.7750 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.1146 3.2630 -0.8454 34 1 3.1646 2.7631 1.0842 35 1 2.7307 1.2814 1.9702 36 1 0.3595 2.0049 2.0190 37 1 0.7934 3.4866 1.1330 38 1 2.3097 4.1466 2.9812 39 1 1.8754 2.6647 3.8665 40 1 -0.5017 4.0544 3.2395 41 1 -3.0314 4.3596 4.4459 42 1 -4.5762 5.3291 2.7926 43 1 -4.1318 7.5597 1.8500 44 1 -2.1408 8.8221 2.5588 45 1 -2.4645 4.9278 6.8382 46 1 -0.9054 3.9965 7.1592 47 1 0.3830 6.1803 7.2369 48 1 -1.1760 7.1117 6.9156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266098232.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:17 Heat of formation + Delta-G solvation = -20.809834 kcal Electronic energy + Delta-G solvation = -29039.417300 eV Core-core repulsion = 25009.859884 eV Total energy + Delta-G solvation = -4029.557416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.00617 -40.46857 -38.87983 -36.81633 -36.18897 -34.72942 -31.84820 -31.47324 -30.98254 -30.57309 -28.55747 -25.94158 -24.48698 -23.61989 -23.24208 -22.19390 -22.16947 -21.01187 -20.24559 -19.47376 -18.03276 -17.26564 -16.70758 -16.45166 -16.00517 -15.62177 -15.55928 -15.30095 -14.89175 -14.70078 -14.42438 -14.17385 -13.94002 -13.58010 -13.42433 -13.23837 -12.97156 -12.61557 -12.59233 -12.35537 -12.17128 -11.77472 -11.58567 -11.52932 -11.42207 -11.16188 -11.00772 -10.88223 -10.77072 -10.58158 -10.50909 -10.46170 -10.09240 -9.92830 -9.63763 -9.52275 -9.21117 -8.89545 -8.79801 -8.46369 -6.50123 -5.76938 -3.42097 0.82262 0.90052 2.52657 3.18957 3.32820 3.36349 3.43563 3.44056 3.57583 4.03982 4.13157 4.46715 4.47504 4.58225 4.65696 4.71383 4.78381 4.99836 5.07306 5.26773 5.34216 5.36152 5.42981 5.55569 5.66972 5.67140 5.75814 5.85120 5.86835 5.90840 5.99566 6.00566 6.09332 6.09991 6.30419 6.36973 6.43770 6.49826 6.57774 6.60023 6.75986 6.79690 6.93108 7.10798 7.18982 7.66041 7.67662 7.83724 8.34613 8.56643 9.22100 9.82055 10.43747 11.22005 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.003283 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.982329 B = 8527.736783 C = 9006.095409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 N -0.584 5.584 4 C -0.264 4.264 5 H 0.057 0.943 6 C 0.018 3.982 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.286 1.286 10 H -0.290 1.290 11 H -0.277 1.277 12 C 0.155 3.845 13 C -0.146 4.146 14 C 0.120 3.880 15 N -0.717 5.717 16 C 0.550 3.450 17 O -0.538 6.538 18 C -0.129 4.129 19 C -0.089 4.089 20 C -0.083 4.083 21 C -0.128 4.128 22 C -0.088 4.088 23 C -0.154 4.154 24 C 0.115 3.885 25 F -0.131 7.131 26 C -0.140 4.140 27 C -0.131 4.131 28 H 0.042 0.958 29 H 0.048 0.952 30 H 0.034 0.966 31 H 0.043 0.957 32 H 0.033 0.967 33 H 0.255 0.745 34 H 0.090 0.910 35 H 0.025 0.975 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.398 0.602 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.137 0.863 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.113 0.887 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.886 6.602 12.273 22.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.394 4.394 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.527 5.527 8 Si 0.724 3.276 9 H -0.213 1.213 10 H -0.216 1.216 11 H -0.202 1.202 12 C 0.028 3.972 13 C -0.186 4.186 14 C -0.003 4.003 15 N -0.367 5.367 16 C 0.335 3.665 17 O -0.416 6.416 18 C -0.132 4.132 19 C -0.090 4.090 20 C -0.101 4.101 21 C -0.146 4.146 22 C -0.106 4.106 23 C -0.173 4.173 24 C 0.096 3.904 25 F -0.110 7.110 26 C -0.177 4.177 27 C -0.168 4.168 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.232 0.768 41 H 0.153 0.847 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.155 0.845 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.131 0.869 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.846 6.692 12.660 22.110 hybrid contribution -0.266 0.948 -1.024 1.420 sum -17.112 7.640 11.636 22.059 Atomic orbital electron populations 1.22369 1.00257 0.98836 1.01040 1.20845 0.91569 0.87463 0.98673 1.43686 1.76196 1.08122 1.02422 1.18953 1.01472 1.23831 0.95140 0.92530 1.25301 0.94355 1.00916 0.97731 1.69987 1.01943 1.38752 1.42057 0.86429 0.76974 0.82379 0.81798 1.21256 1.21640 1.20207 1.20730 0.94090 0.96439 0.85927 1.22545 1.02393 0.99848 0.93855 1.21524 0.87054 0.96125 0.95642 1.46071 1.14501 1.53247 1.22876 1.19193 0.87895 0.78319 0.81062 1.90697 1.29140 1.61478 1.60255 1.20038 0.97160 1.06527 0.89522 1.18948 0.96880 0.93614 0.99559 1.20964 0.92766 0.99722 0.96669 1.21219 1.00101 0.95884 0.97400 1.21076 0.96303 0.94464 0.98738 1.21198 0.95591 1.01904 0.98560 1.17592 0.85216 0.90613 0.97007 1.91538 1.51499 1.78407 1.89517 1.23079 1.00305 0.98555 0.95788 1.23029 1.02982 0.95717 0.95083 0.93865 0.93310 0.94663 0.93898 0.94903 0.93478 0.89257 0.95620 0.93031 0.91776 0.91497 0.91882 0.76781 0.84716 0.84987 0.84864 0.84549 0.87588 0.87676 0.86863 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 10.21 37.16 0.38 -2.57 16 2 C 0.14 2.97 6.44 -4.04 -0.03 2.94 16 3 N -0.58 -14.30 2.41 -173.24 -0.42 -14.71 16 4 C -0.26 -7.13 9.43 -15.06 -0.14 -7.27 16 5 H 0.06 1.54 7.90 -52.49 -0.41 1.12 16 6 C 0.02 0.50 4.99 -17.43 -0.09 0.41 16 7 N -0.89 -25.52 11.59 55.49 0.64 -24.87 16 8 Si 0.89 21.53 29.59 -169.99 -5.03 16.50 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 C 0.16 3.55 5.33 -4.04 -0.02 3.53 16 13 C -0.15 -2.76 5.65 -26.73 -0.15 -2.91 16 14 C 0.12 2.11 5.67 -4.04 -0.02 2.08 16 15 N -0.72 -10.98 5.46 -60.29 -0.33 -11.31 16 16 C 0.55 8.72 7.38 -10.99 -0.08 8.64 16 17 O -0.54 -10.45 16.26 5.55 0.09 -10.36 16 18 C -0.13 -1.55 1.79 -156.81 -0.28 -1.83 16 19 C -0.09 -0.97 4.26 -104.56 -0.45 -1.42 16 20 C -0.08 -0.72 9.07 -39.60 -0.36 -1.08 16 21 C -0.13 -0.98 10.04 -39.57 -0.40 -1.37 16 22 C -0.09 -0.70 10.04 -39.59 -0.40 -1.10 16 23 C -0.15 -1.50 10.03 -39.51 -0.40 -1.90 16 24 C 0.12 1.38 7.19 -39.42 -0.28 1.09 16 25 F -0.13 -1.85 16.54 2.25 0.04 -1.81 16 26 C -0.14 -1.28 9.64 -26.73 -0.26 -1.54 16 27 C -0.13 -1.41 9.40 -26.73 -0.25 -1.66 16 28 H 0.04 0.74 6.65 -51.93 -0.35 0.40 16 29 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.94 8.08 -51.93 -0.42 0.52 16 32 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.09 2.35 5.71 -51.92 -0.30 2.05 16 35 H 0.03 0.56 7.86 -51.93 -0.41 0.15 16 36 H 0.05 0.91 6.65 -51.93 -0.35 0.56 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.31 8.14 -51.92 -0.42 0.88 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.40 5.33 7.47 -40.82 -0.30 5.03 16 41 H 0.13 0.92 8.02 -52.49 -0.42 0.50 16 42 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 43 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 45 H 0.11 0.73 8.09 -51.93 -0.42 0.31 16 46 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.11 1.36 7.67 -51.93 -0.40 0.96 16 48 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 401.14 15.07 6.05 6.05 Total: -1.00 -31.93 401.14 -9.72 -41.65 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.54 Total: 4.81 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -3.22 Total: -5.94 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.10 Total: -50.89 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.93 -9.72 -41.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266098232.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.840 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds