Wall clock time and date at job start Tue Mar 31 2020 18:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47376 * 2 1 4 4 C 1.36939 * 120.00083 * 275.47350 * 3 2 1 5 5 H 1.07995 * 119.99810 * 41.47045 * 4 3 2 6 6 C 1.38817 * 119.99784 * 221.47066 * 4 3 2 7 7 N 1.31615 * 120.00073 * 18.77708 * 6 4 3 8 8 Si 1.86797 * 119.99708 * 198.77642 * 6 4 3 9 9 H 1.48507 * 109.46827 * 90.00175 * 8 6 4 10 10 H 1.48504 * 109.46845 * 209.99835 * 8 6 4 11 11 H 1.48500 * 109.47211 * 330.00063 * 8 6 4 12 12 C 1.46497 * 119.99722 * 95.46936 * 3 2 1 13 13 C 1.53001 * 109.47296 * 269.99807 * 12 3 2 14 14 C 1.53004 * 109.46992 * 179.97438 * 13 12 3 15 15 N 1.46500 * 109.46894 * 180.02562 * 14 13 12 16 16 C 1.34775 * 120.00074 * 180.02562 * 15 14 13 17 17 O 1.21287 * 119.99726 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00104 * 180.02562 * 16 15 14 19 19 C 1.50702 * 115.54803 * 325.57744 * 18 16 15 20 20 C 1.38213 * 120.01003 * 96.51110 * 19 18 16 21 21 C 1.38225 * 120.02301 * 179.97438 * 20 19 18 22 22 C 1.38270 * 120.05415 * 0.02562 * 21 20 19 23 23 C 1.38178 * 120.02011 * 359.96307 * 22 21 20 24 24 C 1.38438 * 120.01110 * 276.46705 * 19 18 16 25 25 F 1.35100 * 120.02815 * 0.04855 * 24 19 18 26 26 C 1.52993 * 117.52026 * 111.28323 * 18 16 15 27 27 C 1.52999 * 60.00402 * 107.47861 * 26 18 16 28 28 H 1.09006 * 109.47279 * 300.00349 * 1 2 3 29 29 H 1.09010 * 109.47036 * 59.99794 * 1 2 3 30 30 H 1.09000 * 109.47679 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47474 * 240.00342 * 2 1 3 32 32 H 1.09001 * 109.47319 * 120.00085 * 2 1 3 33 33 H 0.97002 * 120.00532 * 180.02562 * 7 6 4 34 34 H 1.09008 * 109.47000 * 150.00359 * 12 3 2 35 35 H 1.09000 * 109.47472 * 30.00377 * 12 3 2 36 36 H 1.08999 * 109.46770 * 60.00914 * 13 12 3 37 37 H 1.08996 * 109.47357 * 299.99909 * 13 12 3 38 38 H 1.09008 * 109.47103 * 60.00675 * 14 13 12 39 39 H 1.09000 * 109.47674 * 300.00507 * 14 13 12 40 40 H 0.96997 * 120.00348 * 0.02562 * 15 14 13 41 41 H 1.08000 * 119.99190 * 359.96229 * 20 19 18 42 42 H 1.08003 * 119.97718 * 180.02562 * 21 20 19 43 43 H 1.07997 * 119.99072 * 179.97438 * 22 21 20 44 44 H 1.08001 * 120.00682 * 179.74802 * 23 22 21 45 45 H 1.09005 * 117.49969 * 214.97242 * 26 18 16 46 46 H 1.09001 * 117.50097 * 359.97438 * 26 18 16 47 47 H 1.08998 * 117.49643 * 252.51468 * 27 26 18 48 48 H 1.08997 * 117.51421 * 107.47859 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1400 2.0644 -1.1805 5 1 1.3728 1.9783 -1.9357 6 6 3.2494 2.8677 -1.4064 7 7 4.3394 2.7015 -0.6878 8 14 3.1950 4.1844 -2.7303 9 1 2.7031 5.4567 -2.1431 10 1 4.5587 4.3884 -3.2817 11 1 2.2801 3.7550 -3.8183 12 6 2.3765 2.0314 1.2630 13 6 1.1475 2.7365 1.8401 14 6 1.5215 3.4151 3.1595 15 7 0.3445 4.0897 3.7125 16 6 0.4373 4.7594 4.8783 17 8 1.4952 4.8032 5.4699 18 6 -0.7736 5.4530 5.4474 19 6 -1.7186 6.0464 4.4346 20 6 -2.8359 5.3385 4.0336 21 6 -3.7031 5.8828 3.1051 22 6 -3.4538 7.1356 2.5758 23 6 -2.3375 7.8452 2.9753 24 6 -1.4684 7.3013 3.9061 25 9 -0.3765 7.9941 4.2972 26 6 -1.3812 4.8773 6.7281 27 6 -0.6042 6.1945 6.7750 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.1146 3.2630 -0.8454 34 1 3.1646 2.7631 1.0842 35 1 2.7307 1.2814 1.9702 36 1 0.3595 2.0049 2.0190 37 1 0.7934 3.4866 1.1330 38 1 2.3097 4.1466 2.9812 39 1 1.8754 2.6647 3.8665 40 1 -0.5017 4.0544 3.2395 41 1 -3.0314 4.3596 4.4459 42 1 -4.5762 5.3291 2.7926 43 1 -4.1318 7.5597 1.8500 44 1 -2.1408 8.8221 2.5588 45 1 -2.4645 4.9278 6.8382 46 1 -0.9054 3.9965 7.1592 47 1 0.3830 6.1803 7.2369 48 1 -1.1760 7.1117 6.9156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266098232.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:15 Heat of formation + Delta-G solvation = -37.971627 kcal Electronic energy + Delta-G solvation = -29040.161491 eV Core-core repulsion = 25009.859884 eV Total energy + Delta-G solvation = -4030.301607 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.92810 -41.50274 -39.77903 -38.27926 -37.43226 -36.19872 -33.82417 -32.85430 -31.79950 -31.29966 -30.26225 -27.50988 -25.96095 -24.81957 -24.11114 -23.22692 -22.93539 -22.54211 -22.02443 -20.64295 -18.95953 -18.61585 -18.13311 -17.25695 -17.14506 -17.05190 -16.63631 -16.54251 -16.40571 -15.81847 -15.74513 -15.40965 -15.12100 -14.96496 -14.77610 -14.27534 -14.18067 -14.06993 -13.88051 -13.33524 -13.25085 -13.19788 -12.85677 -12.79810 -12.75154 -12.61447 -12.50498 -12.36140 -12.27641 -12.15173 -11.96699 -11.66205 -11.48065 -11.37962 -11.25454 -11.11957 -10.52265 -10.19519 -9.93532 -9.64187 -8.50945 -7.81140 -5.51829 0.11757 0.22604 1.37025 1.43021 1.45680 1.53478 2.05397 2.48816 2.58071 2.69755 3.23986 3.30954 3.33502 3.63124 3.65704 3.75739 3.78212 3.99303 4.10929 4.14988 4.27205 4.37630 4.43566 4.44073 4.51941 4.60031 4.64378 4.70453 4.76550 4.84396 4.89791 4.94465 4.97686 5.01703 5.09470 5.12085 5.16100 5.19736 5.34557 5.35471 5.37399 5.42642 5.46444 5.61212 5.68867 5.79980 5.92185 6.44235 6.49232 7.11370 7.19396 7.86967 8.41766 9.12495 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.003283 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.982329 B = 8527.736783 C = 9006.095409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.135 3.865 3 N -0.601 5.601 4 C -0.266 4.266 5 H 0.055 0.945 6 C -0.031 4.031 7 N -0.919 5.919 8 Si 0.952 3.048 9 H -0.288 1.288 10 H -0.295 1.295 11 H -0.264 1.264 12 C 0.156 3.844 13 C -0.120 4.120 14 C 0.131 3.869 15 N -0.708 5.708 16 C 0.545 3.455 17 O -0.583 6.583 18 C -0.141 4.141 19 C -0.098 4.098 20 C -0.081 4.081 21 C -0.120 4.120 22 C -0.086 4.086 23 C -0.163 4.163 24 C 0.078 3.922 25 F -0.155 7.155 26 C -0.109 4.109 27 C -0.140 4.140 28 H 0.051 0.949 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.028 0.972 32 H 0.044 0.956 33 H 0.250 0.750 34 H 0.051 0.949 35 H 0.029 0.971 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.038 0.962 39 H 0.065 0.935 40 H 0.410 0.590 41 H 0.158 0.842 42 H 0.164 0.836 43 H 0.161 0.839 44 H 0.142 0.858 45 H 0.139 0.861 46 H 0.104 0.896 47 H 0.092 0.908 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.835 5.866 12.204 25.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.009 3.991 3 N -0.322 5.322 4 C -0.397 4.397 5 H 0.072 0.928 6 C -0.229 4.229 7 N -0.562 5.562 8 Si 0.781 3.219 9 H -0.214 1.214 10 H -0.221 1.221 11 H -0.189 1.189 12 C 0.029 3.971 13 C -0.160 4.160 14 C 0.007 3.993 15 N -0.359 5.359 16 C 0.332 3.668 17 O -0.464 6.464 18 C -0.144 4.144 19 C -0.099 4.099 20 C -0.099 4.099 21 C -0.138 4.138 22 C -0.103 4.103 23 C -0.182 4.182 24 C 0.059 3.941 25 F -0.134 7.134 26 C -0.146 4.146 27 C -0.177 4.177 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.246 0.754 41 H 0.176 0.824 42 H 0.181 0.819 43 H 0.178 0.822 44 H 0.160 0.840 45 H 0.157 0.843 46 H 0.123 0.877 47 H 0.111 0.889 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -20.852 5.940 12.580 25.066 hybrid contribution 0.934 1.115 -1.002 1.766 sum -19.918 7.056 11.578 24.094 Atomic orbital electron populations 1.22162 0.97130 1.00823 1.00832 1.21001 0.93907 0.85618 0.98549 1.43925 1.76630 1.09548 1.02129 1.19168 1.00966 1.23723 0.95812 0.92759 1.25963 0.94150 1.02931 0.99868 1.70120 1.02487 1.39730 1.43895 0.85510 0.76729 0.79845 0.79857 1.21448 1.22114 1.18868 1.20608 0.94791 0.95857 0.85821 1.22165 1.00869 0.99457 0.93556 1.21197 0.87358 0.95471 0.95267 1.45898 1.14157 1.52901 1.22921 1.19906 0.88672 0.77639 0.80536 1.90670 1.31256 1.63020 1.61460 1.19911 0.96373 1.07612 0.90479 1.18944 0.97627 0.93499 0.99814 1.21264 0.91799 1.00329 0.96517 1.21636 1.00446 0.95618 0.96094 1.21467 0.95686 0.94538 0.98641 1.21420 0.95993 1.02561 0.98244 1.18045 0.85542 0.91646 0.98846 1.91471 1.52882 1.79049 1.90013 1.23236 1.01867 0.97211 0.92325 1.23043 1.02728 0.97464 0.94474 0.92971 0.94515 0.91567 0.95357 0.93765 0.94049 0.93051 0.95228 0.90746 0.93288 0.94330 0.91691 0.75356 0.82425 0.81863 0.82158 0.83970 0.84268 0.87713 0.88920 0.86764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 10.21 71.98 0.73 -4.18 16 2 C 0.13 5.50 6.44 86.38 0.56 6.06 16 3 N -0.60 -29.34 2.41 -702.00 -1.69 -31.03 16 4 C -0.27 -14.40 9.43 84.03 0.79 -13.61 16 5 H 0.05 2.93 7.90 -2.91 -0.02 2.90 16 6 C -0.03 -1.74 4.99 84.86 0.42 -1.32 16 7 N -0.92 -54.48 11.59 21.65 0.25 -54.23 16 8 Si 0.95 44.80 29.59 68.60 2.03 46.83 16 9 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 10 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 11 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 12 C 0.16 7.23 5.33 86.38 0.46 7.69 16 13 C -0.12 -4.48 5.65 30.60 0.17 -4.31 16 14 C 0.13 4.68 5.67 86.38 0.49 5.17 16 15 N -0.71 -21.40 5.46 -463.04 -2.53 -23.93 16 16 C 0.55 17.43 7.38 87.66 0.65 18.08 16 17 O -0.58 -23.58 16.26 -3.05 -0.05 -23.63 16 18 C -0.14 -3.25 1.79 -53.67 -0.10 -3.35 16 19 C -0.10 -1.98 4.26 -19.82 -0.08 -2.07 16 20 C -0.08 -1.11 9.07 22.26 0.20 -0.91 16 21 C -0.12 -1.33 10.04 22.27 0.22 -1.10 16 22 C -0.09 -1.09 10.04 22.26 0.22 -0.87 16 23 C -0.16 -2.99 10.03 22.31 0.22 -2.77 16 24 C 0.08 1.85 7.19 22.37 0.16 2.01 16 25 F -0.16 -4.59 16.54 44.97 0.74 -3.85 16 26 C -0.11 -1.75 9.64 30.59 0.29 -1.46 16 27 C -0.14 -2.97 9.40 30.60 0.29 -2.68 16 28 H 0.05 1.61 6.65 -2.38 -0.02 1.59 16 29 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.03 1.21 8.08 -2.39 -0.02 1.20 16 32 H 0.04 1.69 7.83 -2.39 -0.02 1.67 16 33 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 34 H 0.05 2.81 5.71 -2.38 -0.01 2.79 16 35 H 0.03 1.31 7.86 -2.39 -0.02 1.29 16 36 H 0.07 2.44 6.65 -2.39 -0.02 2.42 16 37 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.41 10.34 7.47 -92.71 -0.69 9.64 16 41 H 0.16 1.39 8.02 -2.91 -0.02 1.37 16 42 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 43 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 44 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 45 H 0.14 1.32 8.09 -2.38 -0.02 1.31 16 46 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.09 2.34 7.67 -2.39 -0.02 2.32 16 48 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -72.40 401.14 4.74 -67.66 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.27 Total: 21.81 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 5.71 Total: 0.38 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -3.97 Total: -109.19 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.05 Total: -23.63 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.74 Total: -3.85 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -72.40 4.74 -67.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266098232.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.688 kcal (2) G-P(sol) polarization free energy of solvation -72.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds