Wall clock time and date at job start Tue Mar 31 2020 17:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46833 * 2 1 4 4 C 1.52997 * 109.47294 * 239.99509 * 2 1 3 5 5 N 1.46499 * 109.47205 * 65.00167 * 4 2 1 6 6 C 1.36937 * 119.99999 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00088 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99911 * 179.97438 * 6 5 4 9 9 N 1.31616 * 120.00141 * 0.02562 * 8 6 5 10 10 Si 1.86809 * 119.99649 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.46983 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.46674 * 120.00206 * 10 8 6 13 13 H 1.48499 * 109.46977 * 239.99916 * 10 8 6 14 14 C 1.53001 * 109.46824 * 119.99241 * 2 1 3 15 15 N 1.46506 * 109.47291 * 295.00413 * 14 2 1 16 16 C 1.34774 * 119.99770 * 179.97438 * 15 14 2 17 17 O 1.21283 * 120.00484 * 354.97609 * 16 15 14 18 18 C 1.50698 * 119.99586 * 174.97264 * 16 15 14 19 19 C 1.50699 * 112.85179 * 53.98169 * 18 16 15 20 20 C 1.38225 * 120.01204 * 245.54527 * 19 18 16 21 21 C 1.38221 * 120.02341 * 179.72015 * 20 19 18 22 22 C 1.38272 * 120.05173 * 0.54668 * 21 20 19 23 23 C 1.38177 * 120.02597 * 359.72900 * 22 21 20 24 24 C 1.38431 * 120.01248 * 65.81196 * 19 18 16 25 25 F 1.35098 * 120.02756 * 0.03061 * 24 19 18 26 26 C 1.53780 * 113.61690 * 282.67174 * 18 16 15 27 27 C 1.53786 * 87.08357 * 270.88718 * 26 18 16 28 28 C 1.53784 * 113.61220 * 185.17334 * 18 16 15 29 29 H 1.09003 * 109.46438 * 60.00857 * 1 2 3 30 30 H 1.09001 * 109.46833 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47337 * 300.00692 * 1 2 3 32 32 H 1.09000 * 109.46812 * 185.00298 * 4 2 1 33 33 H 1.09006 * 109.47010 * 304.99655 * 4 2 1 34 34 H 0.97000 * 120.00121 * 359.97438 * 5 4 2 35 35 H 0.97002 * 119.99978 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.46935 * 54.99990 * 14 2 1 37 37 H 1.09003 * 109.47045 * 174.99944 * 14 2 1 38 38 H 0.96998 * 119.99746 * 359.97438 * 15 14 2 39 39 H 1.08000 * 119.98208 * 359.97438 * 20 19 18 40 40 H 1.07998 * 119.97124 * 180.27479 * 21 20 19 41 41 H 1.07993 * 119.98669 * 179.74510 * 22 21 20 42 42 H 1.07998 * 120.01265 * 180.02562 * 23 22 21 43 43 H 1.08995 * 113.61385 * 25.43251 * 26 18 16 44 44 H 1.09004 * 113.61731 * 156.33877 * 26 18 16 45 45 H 1.08997 * 113.61525 * 220.02122 * 27 26 18 46 46 H 1.08992 * 113.61584 * 89.11255 * 27 26 18 47 47 H 1.09002 * 113.61647 * 203.66429 * 28 18 16 48 48 H 1.08999 * 113.61649 * 334.57124 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.6526 0.0352 -2.4423 6 6 2.0013 -0.4211 -3.6855 7 1 2.5616 -1.3389 -3.7863 8 6 1.6336 0.2954 -4.8161 9 7 0.9504 1.4136 -4.6933 10 14 2.1100 -0.3267 -6.5119 11 1 2.8698 -1.5955 -6.3783 12 1 0.8832 -0.5670 -7.3135 13 1 2.9548 0.6876 -7.1920 14 6 2.0400 -0.7211 1.2494 15 7 1.6523 0.0356 2.4425 16 6 1.9954 -0.4133 3.6661 17 8 2.5446 -1.4880 3.7859 18 6 1.6966 0.4203 4.8855 19 6 0.2463 0.8182 4.9813 20 6 -0.1137 2.1489 4.8796 21 6 -1.4445 2.5135 4.9618 22 6 -2.4159 1.5491 5.1570 23 6 -2.0579 0.2189 5.2647 24 6 -0.7254 -0.1482 5.1769 25 9 -0.3741 -1.4484 5.2824 26 6 2.6731 1.5913 5.0856 27 6 3.5472 0.6208 5.8975 28 6 2.2608 -0.1701 6.1885 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.1264 -0.7996 -1.2054 33 1 1.6055 -1.7200 -1.2949 34 1 1.1484 0.8589 -2.3519 35 1 0.6938 1.9145 -5.4833 36 1 1.6053 -1.7196 1.2954 37 1 3.1263 -0.7994 1.2058 38 1 1.1488 0.8597 2.3517 39 1 0.6447 2.9034 4.7318 40 1 -1.7252 3.5530 4.8777 41 1 -3.4549 1.8356 5.2252 42 1 -2.8168 -0.5342 5.4168 43 1 3.1412 1.9321 4.1622 44 1 2.2605 2.4075 5.6786 45 1 3.9925 1.0718 6.7843 46 1 4.2691 0.0727 5.2923 47 1 1.7354 0.1646 7.0830 48 1 2.3960 -1.2512 6.1555 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268009899.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:20 Heat of formation + Delta-G solvation = -33.333034 kcal Electronic energy + Delta-G solvation = -29116.806931 eV Core-core repulsion = 25086.706468 eV Total energy + Delta-G solvation = -4030.100462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.06214 -41.16703 -39.02311 -37.76320 -36.55275 -34.37110 -32.55436 -31.65514 -30.86052 -30.03183 -27.22800 -26.25943 -26.01237 -24.98516 -22.96057 -22.75672 -22.18137 -21.28827 -20.20012 -19.05111 -18.09991 -17.29740 -16.93847 -16.60607 -16.27426 -15.89008 -15.71287 -15.50230 -14.93582 -14.84597 -14.48878 -14.34821 -14.00375 -13.66236 -13.55819 -13.44101 -13.03064 -12.83589 -12.66932 -12.59905 -12.39132 -12.26911 -12.07867 -12.03573 -11.66574 -11.22085 -11.05678 -10.91957 -10.83868 -10.70649 -10.58810 -10.55836 -10.41052 -10.07113 -9.91649 -9.68068 -9.27959 -9.03071 -8.89437 -8.88026 -6.92054 -5.77171 -3.05392 0.77630 0.84555 2.53043 3.06368 3.25187 3.43535 3.49575 3.51647 3.91065 4.10179 4.17760 4.29244 4.48624 4.51580 4.57964 4.60037 4.69273 4.92189 4.96626 5.03974 5.17819 5.22937 5.34322 5.39688 5.40127 5.48087 5.58075 5.60833 5.70291 5.73142 5.80029 5.83473 5.87267 5.93442 5.97637 5.99052 6.03542 6.09534 6.13342 6.26001 6.40390 6.50326 6.52816 6.65512 6.77594 6.87451 7.48971 7.71245 8.18858 8.42008 9.53419 10.10705 10.45655 11.45935 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015671 B = 0.002574 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.269087 B =10874.608639 C =11635.579983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 H 0.076 0.924 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.126 3.874 15 N -0.719 5.719 16 C 0.540 3.460 17 O -0.530 6.530 18 C -0.069 4.069 19 C -0.107 4.107 20 C -0.087 4.087 21 C -0.128 4.128 22 C -0.090 4.090 23 C -0.153 4.153 24 C 0.110 3.890 25 F -0.131 7.131 26 C -0.122 4.122 27 C -0.139 4.139 28 C -0.111 4.111 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.041 0.959 32 H 0.021 0.979 33 H 0.022 0.978 34 H 0.384 0.616 35 H 0.254 0.746 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.400 0.600 39 H 0.137 0.863 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.849 3.934 27.095 27.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 H 0.094 0.906 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.003 3.997 15 N -0.370 5.370 16 C 0.325 3.675 17 O -0.406 6.406 18 C -0.072 4.072 19 C -0.108 4.108 20 C -0.105 4.105 21 C -0.146 4.146 22 C -0.108 4.108 23 C -0.172 4.172 24 C 0.091 3.909 25 F -0.109 7.109 26 C -0.159 4.159 27 C -0.176 4.176 28 C -0.148 4.148 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.234 0.766 39 H 0.155 0.845 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.096 0.904 44 H 0.114 0.886 45 H 0.092 0.908 46 H 0.105 0.895 47 H 0.105 0.895 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.335 2.976 27.023 27.390 hybrid contribution -0.320 0.149 -1.089 1.145 sum -3.656 3.125 25.934 26.376 Atomic orbital electron populations 1.21781 0.94684 1.01927 1.01400 1.21544 0.96710 1.00438 0.94155 0.90566 1.20570 0.96589 0.94211 0.85360 1.42344 1.66915 1.27678 1.00588 1.19290 1.28547 1.05391 0.83649 0.91103 1.24732 1.01046 0.97428 0.97846 1.69665 1.43689 1.16628 1.28345 0.86111 0.77596 0.77849 0.84635 1.20531 1.21886 1.21876 1.21442 1.00006 0.95412 0.82855 1.45966 1.57374 1.27925 1.05724 1.19606 0.78473 0.85822 0.83637 1.90694 1.42478 1.21359 1.86070 1.20905 0.91329 0.98914 0.96079 1.19531 0.93415 0.93515 1.04321 1.21015 0.96797 0.94421 0.98232 1.21226 0.92611 1.00116 1.00620 1.21066 1.00128 0.91851 0.97774 1.21195 0.94359 0.97924 1.03742 1.17604 0.93063 0.78408 1.01843 1.91554 1.92718 1.33475 1.93152 1.23020 0.95831 0.95598 1.01464 1.22833 0.96753 0.97601 1.00450 1.22842 0.95865 1.01926 0.94193 0.91130 0.92852 0.94032 0.96125 0.95999 0.78217 0.93598 0.91303 0.91338 0.76559 0.84543 0.85050 0.84944 0.84656 0.90415 0.88550 0.90765 0.89515 0.89500 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.94 37.16 0.33 -1.83 16 2 C -0.11 -1.73 2.46 -90.62 -0.22 -1.95 16 3 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 4 C 0.16 3.24 5.65 -4.04 -0.02 3.22 16 5 N -0.73 -18.42 5.33 -59.91 -0.32 -18.74 16 6 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 7 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 8 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -28.15 13.06 55.49 0.72 -27.43 16 10 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 C 0.13 1.83 5.07 -4.04 -0.02 1.81 16 15 N -0.72 -9.13 5.22 -60.29 -0.31 -9.44 16 16 C 0.54 7.33 6.13 -10.99 -0.07 7.26 16 17 O -0.53 -9.09 15.87 5.55 0.09 -9.00 16 18 C -0.07 -0.71 0.71 -156.00 -0.11 -0.82 16 19 C -0.11 -1.02 4.54 -104.56 -0.48 -1.49 16 20 C -0.09 -0.64 9.06 -39.59 -0.36 -0.99 16 21 C -0.13 -0.84 10.04 -39.57 -0.40 -1.24 16 22 C -0.09 -0.63 10.04 -39.59 -0.40 -1.02 16 23 C -0.15 -1.34 10.03 -39.51 -0.40 -1.73 16 24 C 0.11 1.19 7.04 -39.42 -0.28 0.91 16 25 F -0.13 -1.73 16.24 2.25 0.04 -1.69 16 26 C -0.12 -0.95 6.33 -25.92 -0.16 -1.12 16 27 C -0.14 -1.20 7.79 -25.91 -0.20 -1.40 16 28 C -0.11 -1.10 6.63 -25.91 -0.17 -1.27 16 29 H 0.07 1.25 7.18 -51.93 -0.37 0.88 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.54 7.18 -51.93 -0.37 0.16 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.38 10.04 6.85 -40.82 -0.28 9.76 16 35 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.40 4.39 7.39 -40.82 -0.30 4.08 16 39 H 0.14 0.73 6.40 -52.49 -0.34 0.40 16 40 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 41 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 42 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 43 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 44 H 0.10 0.56 6.79 -51.93 -0.35 0.20 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 48 H 0.09 1.05 7.38 -51.93 -0.38 0.67 16 LS Contribution 393.35 15.07 5.93 5.93 Total: -1.00 -33.29 393.35 -9.52 -42.81 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -7.44 Total: 9.10 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -3.20 Total: -9.04 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.09 Total: -55.61 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.29 -9.52 -42.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268009899.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.475 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds