Wall clock time and date at job start Tue Mar 31 2020 17:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46833 * 2 1 4 4 C 1.52997 * 109.47294 * 239.99509 * 2 1 3 5 5 N 1.46499 * 109.47205 * 65.00167 * 4 2 1 6 6 C 1.36937 * 119.99999 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00088 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99911 * 179.97438 * 6 5 4 9 9 N 1.31616 * 120.00141 * 0.02562 * 8 6 5 10 10 Si 1.86809 * 119.99649 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.46983 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.46674 * 120.00206 * 10 8 6 13 13 H 1.48499 * 109.46977 * 239.99916 * 10 8 6 14 14 C 1.53001 * 109.46824 * 119.99241 * 2 1 3 15 15 N 1.46506 * 109.47291 * 295.00413 * 14 2 1 16 16 C 1.34774 * 119.99770 * 179.97438 * 15 14 2 17 17 O 1.21283 * 120.00484 * 354.97609 * 16 15 14 18 18 C 1.50698 * 119.99586 * 174.97264 * 16 15 14 19 19 C 1.50699 * 112.85179 * 53.98169 * 18 16 15 20 20 C 1.38225 * 120.01204 * 245.54527 * 19 18 16 21 21 C 1.38221 * 120.02341 * 179.72015 * 20 19 18 22 22 C 1.38272 * 120.05173 * 0.54668 * 21 20 19 23 23 C 1.38177 * 120.02597 * 359.72900 * 22 21 20 24 24 C 1.38431 * 120.01248 * 65.81196 * 19 18 16 25 25 F 1.35098 * 120.02756 * 0.03061 * 24 19 18 26 26 C 1.53780 * 113.61690 * 282.67174 * 18 16 15 27 27 C 1.53786 * 87.08357 * 270.88718 * 26 18 16 28 28 C 1.53784 * 113.61220 * 185.17334 * 18 16 15 29 29 H 1.09003 * 109.46438 * 60.00857 * 1 2 3 30 30 H 1.09001 * 109.46833 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47337 * 300.00692 * 1 2 3 32 32 H 1.09000 * 109.46812 * 185.00298 * 4 2 1 33 33 H 1.09006 * 109.47010 * 304.99655 * 4 2 1 34 34 H 0.97000 * 120.00121 * 359.97438 * 5 4 2 35 35 H 0.97002 * 119.99978 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.46935 * 54.99990 * 14 2 1 37 37 H 1.09003 * 109.47045 * 174.99944 * 14 2 1 38 38 H 0.96998 * 119.99746 * 359.97438 * 15 14 2 39 39 H 1.08000 * 119.98208 * 359.97438 * 20 19 18 40 40 H 1.07998 * 119.97124 * 180.27479 * 21 20 19 41 41 H 1.07993 * 119.98669 * 179.74510 * 22 21 20 42 42 H 1.07998 * 120.01265 * 180.02562 * 23 22 21 43 43 H 1.08995 * 113.61385 * 25.43251 * 26 18 16 44 44 H 1.09004 * 113.61731 * 156.33877 * 26 18 16 45 45 H 1.08997 * 113.61525 * 220.02122 * 27 26 18 46 46 H 1.08992 * 113.61584 * 89.11255 * 27 26 18 47 47 H 1.09002 * 113.61647 * 203.66429 * 28 18 16 48 48 H 1.08999 * 113.61649 * 334.57124 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.6526 0.0352 -2.4423 6 6 2.0013 -0.4211 -3.6855 7 1 2.5616 -1.3389 -3.7863 8 6 1.6336 0.2954 -4.8161 9 7 0.9504 1.4136 -4.6933 10 14 2.1100 -0.3267 -6.5119 11 1 2.8698 -1.5955 -6.3783 12 1 0.8832 -0.5670 -7.3135 13 1 2.9548 0.6876 -7.1920 14 6 2.0400 -0.7211 1.2494 15 7 1.6523 0.0356 2.4425 16 6 1.9954 -0.4133 3.6661 17 8 2.5446 -1.4880 3.7859 18 6 1.6966 0.4203 4.8855 19 6 0.2463 0.8182 4.9813 20 6 -0.1137 2.1489 4.8796 21 6 -1.4445 2.5135 4.9618 22 6 -2.4159 1.5491 5.1570 23 6 -2.0579 0.2189 5.2647 24 6 -0.7254 -0.1482 5.1769 25 9 -0.3741 -1.4484 5.2824 26 6 2.6731 1.5913 5.0856 27 6 3.5472 0.6208 5.8975 28 6 2.2608 -0.1701 6.1885 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.1264 -0.7996 -1.2054 33 1 1.6055 -1.7200 -1.2949 34 1 1.1484 0.8589 -2.3519 35 1 0.6938 1.9145 -5.4833 36 1 1.6053 -1.7196 1.2954 37 1 3.1263 -0.7994 1.2058 38 1 1.1488 0.8597 2.3517 39 1 0.6447 2.9034 4.7318 40 1 -1.7252 3.5530 4.8777 41 1 -3.4549 1.8356 5.2252 42 1 -2.8168 -0.5342 5.4168 43 1 3.1412 1.9321 4.1622 44 1 2.2605 2.4075 5.6786 45 1 3.9925 1.0718 6.7843 46 1 4.2691 0.0727 5.2923 47 1 1.7354 0.1646 7.0830 48 1 2.3960 -1.2512 6.1555 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268009899.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:19 Heat of formation + Delta-G solvation = -53.188082 kcal Electronic energy + Delta-G solvation = -29117.667910 eV Core-core repulsion = 25086.706468 eV Total energy + Delta-G solvation = -4030.961442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.90601 -42.02745 -39.82801 -38.73637 -37.84256 -35.99712 -34.16640 -32.41461 -31.83612 -31.43034 -28.27908 -27.53482 -26.91286 -26.32645 -24.41893 -23.55041 -23.04983 -22.23288 -21.53527 -20.15074 -19.11646 -18.77171 -17.95187 -17.42697 -17.27049 -16.85286 -16.65889 -16.51433 -16.40302 -15.88162 -15.62680 -15.47459 -15.14285 -15.03673 -14.87181 -14.36398 -14.19286 -14.15014 -13.68134 -13.63862 -13.45864 -13.30929 -13.01676 -12.97565 -12.83701 -12.72175 -12.25806 -12.21703 -12.14791 -12.03547 -11.97586 -11.74248 -11.69130 -11.49942 -11.30624 -10.97968 -10.95882 -10.17445 -9.89295 -9.58929 -9.00539 -7.96297 -5.24646 0.15746 0.25906 1.47547 1.47778 1.49781 1.58117 2.05243 2.55791 2.63698 3.25172 3.37460 3.39314 3.48858 3.57372 3.66577 3.70510 3.82414 3.91089 3.96415 4.03320 4.17655 4.30679 4.36144 4.42278 4.48213 4.50180 4.65017 4.70786 4.71554 4.77925 4.88904 4.93420 4.98231 4.98823 5.01987 5.08002 5.09083 5.12729 5.24288 5.28459 5.34580 5.36215 5.42157 5.43697 5.49350 5.49965 5.95396 6.26507 6.45884 7.14424 7.33514 8.07515 8.32836 9.27286 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015671 B = 0.002574 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.269087 B =10874.608639 C =11635.579983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.091 4.091 3 H 0.083 0.917 4 C 0.158 3.842 5 N -0.740 5.740 6 C -0.247 4.247 7 H 0.072 0.928 8 C -0.072 4.072 9 N -0.966 5.966 10 Si 0.972 3.028 11 H -0.269 1.269 12 H -0.292 1.292 13 H -0.291 1.291 14 C 0.138 3.862 15 N -0.710 5.710 16 C 0.536 3.464 17 O -0.574 6.574 18 C -0.070 4.070 19 C -0.115 4.115 20 C -0.083 4.083 21 C -0.121 4.121 22 C -0.088 4.088 23 C -0.163 4.163 24 C 0.074 3.926 25 F -0.156 7.156 26 C -0.107 4.107 27 C -0.138 4.138 28 C -0.114 4.114 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.021 0.979 33 H 0.018 0.982 34 H 0.377 0.623 35 H 0.252 0.748 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.411 0.589 39 H 0.162 0.838 40 H 0.162 0.838 41 H 0.158 0.842 42 H 0.140 0.860 43 H 0.079 0.921 44 H 0.128 0.872 45 H 0.097 0.903 46 H 0.063 0.937 47 H 0.103 0.897 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.346 6.178 28.050 29.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.110 4.110 3 H 0.101 0.899 4 C 0.031 3.969 5 N -0.384 5.384 6 C -0.379 4.379 7 H 0.090 0.910 8 C -0.265 4.265 9 N -0.617 5.617 10 Si 0.801 3.199 11 H -0.194 1.194 12 H -0.219 1.219 13 H -0.218 1.218 14 C 0.013 3.987 15 N -0.361 5.361 16 C 0.323 3.677 17 O -0.453 6.453 18 C -0.073 4.073 19 C -0.116 4.116 20 C -0.101 4.101 21 C -0.139 4.139 22 C -0.106 4.106 23 C -0.182 4.182 24 C 0.055 3.945 25 F -0.135 7.135 26 C -0.144 4.144 27 C -0.175 4.175 28 C -0.152 4.152 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.039 0.961 33 H 0.036 0.964 34 H 0.210 0.790 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.248 0.752 39 H 0.180 0.820 40 H 0.179 0.821 41 H 0.176 0.824 42 H 0.158 0.842 43 H 0.098 0.902 44 H 0.146 0.854 45 H 0.116 0.884 46 H 0.082 0.918 47 H 0.122 0.878 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.833 5.219 28.003 28.742 hybrid contribution -0.211 -0.575 -1.319 1.454 sum -4.044 4.644 26.684 27.385 Atomic orbital electron populations 1.21696 0.94124 1.01633 1.01595 1.21314 0.96935 1.00197 0.92601 0.89881 1.20697 0.96575 0.94004 0.85635 1.42489 1.66804 1.27803 1.01261 1.19651 1.27921 1.05294 0.85052 0.90972 1.25523 1.01624 0.97887 1.01423 1.69803 1.45031 1.17803 1.29064 0.85095 0.77121 0.77612 0.80061 1.19355 1.21942 1.21820 1.21159 0.99585 0.94872 0.83061 1.45827 1.57212 1.28028 1.05022 1.20261 0.77310 0.85555 0.84591 1.90671 1.44477 1.23437 1.86753 1.20842 0.92782 0.99569 0.94125 1.19536 0.92361 0.94327 1.05372 1.21322 0.97967 0.93674 0.97135 1.21634 0.92060 1.01465 0.98728 1.21432 1.01721 0.90985 0.96467 1.21396 0.93681 0.99212 1.03902 1.18047 0.94479 0.77749 1.04219 1.91487 1.93025 1.35319 1.93681 1.23080 0.94329 0.95237 1.01785 1.22801 0.95947 0.97527 1.01253 1.22870 0.97128 1.00191 0.94964 0.93424 0.93428 0.91194 0.96087 0.96406 0.79000 0.93905 0.92551 0.91736 0.75218 0.82046 0.82085 0.82435 0.84219 0.90186 0.85386 0.88430 0.91805 0.87839 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 8.94 71.98 0.64 -3.36 16 2 C -0.09 -2.84 2.46 -10.79 -0.03 -2.86 16 3 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 4 C 0.16 6.38 5.65 86.38 0.49 6.87 16 5 N -0.74 -37.53 5.33 -343.45 -1.83 -39.36 16 6 C -0.25 -13.96 9.99 84.03 0.84 -13.12 16 7 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 8 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 9 N -0.97 -58.54 13.06 21.65 0.28 -58.26 16 10 Si 0.97 46.29 29.55 68.60 2.03 48.32 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 12 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 13 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 14 C 0.14 3.97 5.07 86.38 0.44 4.41 16 15 N -0.71 -17.51 5.22 -463.04 -2.42 -19.93 16 16 C 0.54 14.66 6.13 87.66 0.54 15.20 16 17 O -0.57 -20.65 15.87 -3.04 -0.05 -20.70 16 18 C -0.07 -1.37 0.71 -53.15 -0.04 -1.41 16 19 C -0.11 -1.99 4.54 -19.82 -0.09 -2.09 16 20 C -0.08 -0.91 9.06 22.26 0.20 -0.71 16 21 C -0.12 -1.09 10.04 22.27 0.22 -0.87 16 22 C -0.09 -0.96 10.04 22.26 0.22 -0.73 16 23 C -0.16 -2.65 10.03 22.31 0.22 -2.43 16 24 C 0.07 1.58 7.04 22.38 0.16 1.73 16 25 F -0.16 -4.37 16.24 44.97 0.73 -3.64 16 26 C -0.11 -1.40 6.33 31.12 0.20 -1.20 16 27 C -0.14 -2.23 7.79 31.13 0.24 -1.99 16 28 C -0.11 -2.25 6.63 31.12 0.21 -2.04 16 29 H 0.05 1.67 7.18 -2.39 -0.02 1.65 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.69 7.18 -2.39 -0.02 1.67 16 32 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.02 0.74 8.14 -2.38 -0.02 0.73 16 34 H 0.38 19.92 6.85 -92.71 -0.63 19.28 16 35 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.41 8.22 7.39 -92.71 -0.69 7.54 16 39 H 0.16 0.92 6.40 -2.91 -0.02 0.90 16 40 H 0.16 0.53 8.06 -2.91 -0.02 0.51 16 41 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 42 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 43 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 44 H 0.13 0.89 6.79 -2.38 -0.02 0.87 16 45 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.10 1.65 8.09 -2.39 -0.02 1.63 16 48 H 0.05 1.44 7.38 -2.39 -0.02 1.42 16 Total: -1.00 -74.06 393.35 3.34 -70.73 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: -0.34 Total: 31.12 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 4.93 Total: -8.28 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -3.96 Total: -117.55 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.05 Total: -20.70 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.73 Total: -3.64 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -74.06 3.34 -70.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268009899.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.541 kcal (2) G-P(sol) polarization free energy of solvation -74.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds