Wall clock time and date at job start Tue Mar 31 2020 18:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36941 * 120.00100 * 2 1 4 4 H 1.07993 * 120.00087 * 198.30261 * 3 2 1 5 5 C 1.38814 * 119.99727 * 18.30322 * 3 2 1 6 6 N 1.31616 * 120.00404 * 14.30245 * 5 3 2 7 7 Si 1.86801 * 120.00086 * 194.30349 * 5 3 2 8 8 H 1.48503 * 109.47051 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.47184 * 119.99395 * 7 5 3 10 10 H 1.48499 * 109.47439 * 240.00240 * 7 5 3 11 11 C 1.46492 * 120.00246 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47552 * 270.00209 * 11 2 1 13 13 N 1.46499 * 109.47568 * 179.97438 * 12 11 2 14 14 C 1.46492 * 120.00347 * 270.00033 * 13 12 11 15 15 C 1.34786 * 119.99435 * 90.00119 * 13 12 11 16 16 O 1.21273 * 120.00223 * 353.99274 * 15 13 12 17 17 C 1.50701 * 119.99510 * 173.99598 * 15 13 12 18 18 C 1.52998 * 115.54955 * 75.58371 * 17 15 13 19 19 C 1.50692 * 109.47092 * 39.84382 * 18 17 15 20 20 C 1.38248 * 119.97504 * 82.88054 * 19 18 17 21 21 C 1.38200 * 120.02681 * 180.02562 * 20 19 18 22 22 C 1.38462 * 119.97434 * 0.23432 * 21 20 19 23 23 F 1.35099 * 120.02924 * 179.72273 * 22 21 20 24 24 C 1.38463 * 119.94767 * 359.49530 * 22 21 20 25 25 C 1.38208 * 119.97058 * 0.52113 * 24 22 21 26 26 C 1.53002 * 117.51372 * 221.28509 * 17 15 13 27 27 C 1.53000 * 60.00076 * 107.48135 * 26 17 15 28 28 H 1.08997 * 109.47155 * 275.09108 * 1 2 3 29 29 H 1.09001 * 109.46487 * 35.09100 * 1 2 3 30 30 H 1.08995 * 109.46755 * 155.09103 * 1 2 3 31 31 H 0.97001 * 120.00584 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.47548 * 150.00263 * 11 2 1 33 33 H 1.09005 * 109.47240 * 30.00255 * 11 2 1 34 34 H 1.09004 * 109.46994 * 59.99738 * 12 11 2 35 35 H 1.09005 * 109.46885 * 300.00263 * 12 11 2 36 36 H 1.08992 * 109.47458 * 264.82326 * 14 13 12 37 37 H 1.09000 * 109.47037 * 24.82645 * 14 13 12 38 38 H 1.09000 * 109.47088 * 144.82085 * 14 13 12 39 39 H 1.08996 * 109.47159 * 279.83977 * 18 17 15 40 40 H 1.09008 * 109.46582 * 159.84337 * 18 17 15 41 41 H 1.07996 * 119.98968 * 0.02562 * 20 19 18 42 42 H 1.07997 * 120.01515 * 179.97438 * 21 20 19 43 43 H 1.07994 * 120.01346 * 180.25826 * 24 22 21 44 44 H 1.07995 * 119.98091 * 179.75169 * 25 24 22 45 45 H 1.08998 * 117.49464 * 214.97373 * 26 17 15 46 46 H 1.09000 * 117.49803 * 359.97438 * 26 17 15 47 47 H 1.09000 * 117.49668 * 252.50897 * 27 26 17 48 48 H 1.08997 * 117.52145 * 107.47833 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1887 1.2096 -0.2937 5 6 1.5083 2.3577 0.3775 6 7 0.3485 2.3028 0.9973 7 14 2.2912 4.0125 0.0060 8 1 3.5843 3.8025 -0.6935 9 1 1.3834 4.8062 -0.8608 10 1 2.5283 4.7444 1.2762 11 6 2.1975 -1.2686 0.0006 12 6 2.4526 -1.7098 1.4432 13 7 3.1846 -2.9788 1.4438 14 6 2.4517 -4.2472 1.4445 15 6 4.5324 -2.9791 1.4437 16 8 5.1391 -1.9349 1.3332 17 6 5.2855 -4.2773 1.5808 18 6 5.3174 -5.1570 0.3294 19 6 5.4982 -4.2898 -0.8897 20 6 6.7636 -3.8741 -1.2601 21 6 6.9306 -3.0784 -2.3776 22 6 5.8295 -2.6935 -3.1236 23 9 5.9909 -1.9111 -4.2130 24 6 4.5632 -3.1151 -2.7549 25 6 4.3986 -3.9106 -1.6367 26 6 6.5220 -4.2854 2.4819 27 6 5.2383 -4.9814 2.9384 28 1 -0.3633 0.0912 1.0236 29 1 -0.3632 0.8409 -0.5908 30 1 -0.3633 -0.9320 -0.4328 31 1 -0.0999 3.1216 1.2608 32 1 3.1500 -1.1385 -0.5133 33 1 1.6085 -2.0286 -0.5130 34 1 1.5001 -1.8399 1.9571 35 1 3.0416 -0.9498 1.9568 36 1 2.3503 -4.6077 2.4681 37 1 1.4623 -4.0954 1.0130 38 1 2.9972 -4.9823 0.8528 39 1 4.3801 -5.7073 0.2482 40 1 6.1468 -5.8607 0.4011 41 1 7.6220 -4.1712 -0.6759 42 1 7.9191 -2.7534 -2.6665 43 1 3.7040 -2.8191 -3.3384 44 1 3.4106 -4.2362 -1.3467 45 1 7.3583 -4.9174 2.1831 46 1 6.7913 -3.3515 2.9753 47 1 4.6628 -4.5055 3.7324 48 1 5.2295 -6.0713 2.9400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268253157.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:20 Heat of formation + Delta-G solvation = 3.052413 kcal Electronic energy + Delta-G solvation = -30131.500568 eV Core-core repulsion = 26102.977897 eV Total energy + Delta-G solvation = -4028.522671 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -48.78646 -40.47068 -38.78064 -36.95390 -35.86170 -34.78453 -32.19116 -31.37354 -31.11528 -28.70662 -27.02318 -26.46659 -25.82296 -24.22122 -23.09408 -22.55877 -22.14410 -21.39596 -20.31183 -18.45546 -17.62108 -16.82464 -16.58092 -16.38458 -15.88400 -15.58663 -15.41416 -15.27696 -14.90562 -14.36837 -14.10449 -14.03838 -13.65530 -13.49799 -13.45138 -13.21117 -12.89447 -12.65732 -12.49256 -12.36753 -12.19661 -12.00254 -11.82374 -11.71991 -11.66096 -11.26138 -10.99327 -10.83551 -10.77377 -10.66695 -10.47014 -10.20493 -10.04040 -9.84072 -9.72105 -9.35007 -9.06198 -8.56923 -8.51338 -8.27516 -6.73426 -5.66479 -3.07515 1.14370 1.27475 2.90172 3.21169 3.44569 3.51263 3.51944 3.56402 3.62670 4.32784 4.38525 4.55649 4.58838 4.62760 4.69101 4.76704 4.92156 5.04716 5.11276 5.22197 5.26553 5.38308 5.43171 5.49143 5.53630 5.58013 5.61042 5.72549 5.75337 5.77713 5.88789 5.89259 5.96585 6.04357 6.16193 6.24618 6.28295 6.30922 6.47401 6.69362 6.74661 6.80674 6.91660 7.11011 7.43334 7.74335 7.76078 7.91876 8.44389 8.56106 9.31155 9.93937 10.39751 11.39427 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010034 B = 0.004361 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.827965 B = 6419.344567 C = 7827.292407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.600 5.600 3 C -0.245 4.245 4 H 0.071 0.929 5 C -0.002 4.002 6 N -0.913 5.913 7 Si 0.902 3.098 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.147 3.853 12 C 0.094 3.906 13 N -0.608 5.608 14 C 0.076 3.924 15 C 0.547 3.453 16 O -0.523 6.523 17 C -0.149 4.149 18 C -0.035 4.035 19 C -0.097 4.097 20 C -0.075 4.075 21 C -0.153 4.153 22 C 0.099 3.901 23 F -0.142 7.142 24 C -0.145 4.145 25 C -0.078 4.078 26 C -0.146 4.146 27 C -0.161 4.161 28 H 0.027 0.973 29 H 0.048 0.952 30 H -0.005 1.005 31 H 0.250 0.750 32 H 0.048 0.952 33 H 0.032 0.968 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.128 0.872 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.098 0.902 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.000 -21.819 -0.745 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.323 5.323 3 C -0.375 4.375 4 H 0.089 0.911 5 C -0.199 4.199 6 N -0.559 5.559 7 Si 0.732 3.268 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.019 3.981 12 C -0.030 4.030 13 N -0.342 5.342 14 C -0.067 4.067 15 C 0.333 3.667 16 O -0.398 6.398 17 C -0.153 4.153 18 C -0.072 4.072 19 C -0.098 4.098 20 C -0.093 4.093 21 C -0.172 4.172 22 C 0.080 3.920 23 F -0.120 7.120 24 C -0.164 4.164 25 C -0.096 4.096 26 C -0.183 4.183 27 C -0.198 4.198 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.013 0.987 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.153 0.847 44 H 0.146 0.854 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.116 0.884 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.191 -21.048 -0.817 22.982 hybrid contribution 0.197 1.210 -0.167 1.237 sum 9.387 -19.838 -0.984 21.969 Atomic orbital electron populations 1.20824 0.82351 0.95477 0.99341 1.44013 1.01951 1.00677 1.85630 1.19330 0.95858 0.84500 1.37765 0.91102 1.24907 0.97605 0.98224 0.99160 1.70099 1.17083 1.26241 1.42465 0.86197 0.78654 0.84293 0.77607 1.20281 1.21665 1.21792 1.21068 0.95978 0.87911 0.93160 1.22604 0.95288 0.83207 1.01868 1.47956 1.05369 1.07616 1.73245 1.21862 0.97447 0.86016 1.01405 1.19326 0.81996 0.88864 0.76541 1.90742 1.67706 1.33100 1.48206 1.21455 1.03723 0.97093 0.92993 1.20137 1.03240 0.95007 0.88839 1.19725 0.93413 0.99978 0.96642 1.20759 0.97009 0.96405 0.95172 1.21074 0.98235 1.01013 0.96859 1.17732 0.94612 0.93823 0.85876 1.91495 1.96427 1.72247 1.51853 1.21135 0.96051 1.00038 0.99161 1.20855 0.98524 0.96578 0.93600 1.23038 0.91164 1.02841 1.01277 1.23078 1.01353 0.99782 0.95603 0.95517 0.93376 0.98686 0.93944 0.93406 0.94930 0.91583 0.90067 0.93056 0.90955 0.91448 0.89826 0.89829 0.85380 0.85011 0.84702 0.85378 0.88051 0.88055 0.88386 0.87925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.10 9.01 59.85 0.54 4.64 16 2 N -0.60 -15.56 2.93 -181.12 -0.53 -16.09 16 3 C -0.24 -7.09 9.70 -15.06 -0.15 -7.24 16 4 H 0.07 2.10 7.85 -52.49 -0.41 1.69 16 5 C 0.00 -0.05 5.09 -17.43 -0.09 -0.14 16 6 N -0.91 -27.20 10.51 55.49 0.58 -26.62 16 7 Si 0.90 23.05 29.58 -169.99 -5.03 18.02 16 8 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 9 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 10 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 11 C 0.15 3.15 6.03 -4.05 -0.02 3.13 16 12 C 0.09 1.84 5.66 -4.04 -0.02 1.81 16 13 N -0.61 -9.14 2.87 -181.58 -0.52 -9.67 16 14 C 0.08 0.78 9.80 59.84 0.59 1.37 16 15 C 0.55 8.68 5.48 -10.98 -0.06 8.62 16 16 O -0.52 -11.03 16.59 5.56 0.09 -10.94 16 17 C -0.15 -1.63 1.20 -155.66 -0.19 -1.81 16 18 C -0.04 -0.31 5.03 -27.89 -0.14 -0.45 16 19 C -0.10 -1.12 4.25 -104.62 -0.44 -1.56 16 20 C -0.08 -0.88 9.73 -39.59 -0.39 -1.26 16 21 C -0.15 -1.96 10.03 -39.51 -0.40 -2.35 16 22 C 0.10 1.43 7.30 -39.42 -0.29 1.14 16 23 F -0.14 -2.19 17.27 2.25 0.04 -2.15 16 24 C -0.15 -2.01 10.03 -39.51 -0.40 -2.40 16 25 C -0.08 -0.96 9.31 -39.59 -0.37 -1.33 16 26 C -0.15 -1.43 9.76 -26.73 -0.26 -1.69 16 27 C -0.16 -1.36 9.60 -26.73 -0.26 -1.62 16 28 H 0.03 0.71 7.46 -51.93 -0.39 0.32 16 29 H 0.05 1.30 7.05 -51.93 -0.37 0.93 16 30 H -0.01 -0.12 7.83 -51.93 -0.41 -0.52 16 31 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.05 1.12 8.03 -51.93 -0.42 0.70 16 33 H 0.03 0.62 7.86 -51.93 -0.41 0.21 16 34 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 35 H 0.08 1.90 7.51 -51.93 -0.39 1.51 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.72 8.03 -51.93 -0.42 0.30 16 38 H 0.07 0.55 4.63 -51.93 -0.24 0.31 16 39 H 0.08 0.59 5.91 -51.93 -0.31 0.28 16 40 H 0.08 0.55 7.93 -51.92 -0.41 0.14 16 41 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 43 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 44 H 0.13 1.39 7.90 -52.49 -0.41 0.98 16 45 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 46 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 397.27 15.07 5.99 5.99 Total: -1.00 -34.50 397.27 -9.23 -43.73 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -7.51 Total: -1.14 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -2.34 Total: -1.13 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.47 Total: -52.37 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.03 Total: 18.02 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.50 -9.23 -43.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268253157.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.779 kcal (2) G-P(sol) polarization free energy of solvation -34.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds